tRNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20410 AT1G20410 |
| fragaria_vesca | FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 |
| malus_domestica | MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1 |
| prunus_persica | Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0303901 |
| rosa_laevigata | RLG00000011036 |
| rosa_multiflora | Rmu_co8406005.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00164290 |
| rosa_rugosa | Rorug06G0325700 Rorug06G0325800 |
| rosa_samantha | Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300 |
| rosa_wichuraiana | Rw6G038100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 72 |
| AccB1I | GGYRCC | 1 cut(s) | 669 |
| AccIII | TCCGGA | 1 cut(s) | 1058 |
| AciI | CCGC | 6 cut(s) | 142, 341, 607, 1022, 1354, 1357 |
| AclWI | GGATC | 4 cut(s) | 468, 1212, 1494, 1522 |
| AcsI | RAATTY | 4 cut(s) | 546, 655, 1010, 1472 |
| AcuI | CTGAAG | 1 cut(s) | 821 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AdeI | CACNNNGTG | 1 cut(s) | 97 |
| AfaI | GTAC | 6 cut(s) | 623, 893, 1007, 1083, 1447, 1528 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 376, 1078, 1108, 1511 |
| AflIII | ACRYGT | 1 cut(s) | 1314 |
| AgsI | TTSAA | 7 cut(s) | 222, 413, 500, 544, 753, 785, 1305 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1291 |
| AjnI | CCWGG | 3 cut(s) | 435, 1071, 1449 |
| AleI | CACNNNNGTG | 1 cut(s) | 1255 |
| AluBI | AGCT | 7 cut(s) | 80, 204, 577, 764, 779, 915, 1509 |
| AluI | AGCT | 7 cut(s) | 80, 204, 577, 764, 779, 915, 1509 |
| Alw21I | GWGCWC | 2 cut(s) | 82, 206 |
| Alw26I | GTCTC | 1 cut(s) | 183 |
| AlwI | GGATC | 4 cut(s) | 468, 1212, 1494, 1522 |
| Aor13HI | TCCGGA | 1 cut(s) | 1058 |
| AoxI | GGCC | 1 cut(s) | 1064 |
| ApeKI | GCWGC | 2 cut(s) | 678, 1019 |
| ApoI | RAATTY | 4 cut(s) | 546, 655, 1010, 1472 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1476 |
| AsuHPI | GGTGA | 4 cut(s) | 180, 337, 1010, 1343 |
| AsuII | TTCGAA | 1 cut(s) | 1045 |
| BaeGI | GKGCMC | 1 cut(s) | 61 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1429, 1462 |
| BanI | GGYRCC | 1 cut(s) | 669 |
| BanII | GRGCYC | 2 cut(s) | 82, 206 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 405, 437 |
| BbsI | GAAGAC | 1 cut(s) | 1290 |
| Bbv12I | GWGCWC | 2 cut(s) | 82, 206 |
| BbvI | GCAGC | 2 cut(s) | 690, 1006 |
| BccI | CCATC | 2 cut(s) | 338, 1111 |
| BceAI | ACGGC | 2 cut(s) | 80, 691 |
| BciT130I | CCWGG | 3 cut(s) | 437, 1073, 1451 |
| BcoDI | GTCTC | 1 cut(s) | 183 |
| BfaI | CTAG | 3 cut(s) | 566, 1506, 1530 |
| BglII | AGATCT | 1 cut(s) | 1123 |
| BisI | GCNGC | 3 cut(s) | 679, 1020, 1357 |
| BlpI | GCTNAGC | 1 cut(s) | 200 |
| BlsI | GCNGC | 3 cut(s) | 680, 1021, 1358 |
| BmcAI | AGTACT | 1 cut(s) | 893 |
| Bme1390I | CCNGG | 3 cut(s) | 437, 1073, 1451 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1291 |
| BmiI | GGNNCC | 2 cut(s) | 671, 1057 |
| BmrFI | CCNGG | 3 cut(s) | 437, 1073, 1451 |
| BmsI | GCATC | 3 cut(s) | 122, 526, 959 |
| BpiI | GAAGAC | 1 cut(s) | 1290 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 95, 127 |
| BpmI | CTGGAG | 1 cut(s) | 833 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 200 |
| Bpu14I | TTCGAA | 1 cut(s) | 1045 |
| BpuEI | CTTGAG | 2 cut(s) | 880, 1259 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaI | GGTCTC | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 2 cut(s) | 673, 1449 |
| BsaWI | WCCGGW | 2 cut(s) | 855, 1058 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 376, 1078, 1108, 1511 |
| Bse118I | RCCGGY | 1 cut(s) | 256 |
| Bse1I | ACTGG | 2 cut(s) | 428, 1188 |
| BseAI | TCCGGA | 1 cut(s) | 1058 |
| BseBI | CCWGG | 3 cut(s) | 437, 1073, 1451 |
| BseDI | CCNNGG | 2 cut(s) | 673, 1449 |
| BseGI | GGATG | 4 cut(s) | 349, 1285, 1398, 1567 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 376, 1078, 1108, 1511 |
| BseMII | CTCAG | 2 cut(s) | 191, 219 |
| BseNI | ACTGG | 2 cut(s) | 428, 1188 |
| BseSI | GKGCMC | 1 cut(s) | 61 |
| BseXI | GCAGC | 2 cut(s) | 690, 1006 |
| BseYI | CCCAGC | 2 cut(s) | 86, 764 |
| BsgI | GTGCAG | 2 cut(s) | 1233, 1421 |
| Bsh1285I | CGRYCG | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 1066 |
| BshNI | GGYRCC | 1 cut(s) | 669 |
| BsiEI | CGRYCG | 1 cut(s) | 36 |
| BsiHKAI | GWGCWC | 2 cut(s) | 82, 206 |
| BsiSI | CCGG | 4 cut(s) | 29, 257, 856, 1059 |
| BslFI | GGGAC | 1 cut(s) | 1085 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 376, 1078, 1108, 1511 |
| BsmAI | GTCTC | 1 cut(s) | 183 |
| BsmFI | GGGAC | 1 cut(s) | 1085 |
| BsmI | GAATGC | 3 cut(s) | 524, 609, 1269 |
| BsnI | GGCC | 1 cut(s) | 1066 |
| Bso31I | GGTCTC | 1 cut(s) | 183 |
| Bsp119I | TTCGAA | 1 cut(s) | 1045 |
| Bsp1286I | GDGCHC | 3 cut(s) | 61, 82, 206 |
| Bsp13I | TCCGGA | 1 cut(s) | 1058 |
| Bsp143I | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 200 |
| BspACI | CCGC | 6 cut(s) | 142, 341, 607, 1022, 1354, 1357 |
| BspANI | GGCC | 1 cut(s) | 1066 |
| BspCNI | CTCAG | 2 cut(s) | 192, 218 |
| BspEI | TCCGGA | 1 cut(s) | 1058 |
| BspLI | GGNNCC | 2 cut(s) | 671, 1057 |
| BspPI | GGATC | 4 cut(s) | 468, 1212, 1494, 1522 |
| BspT104I | TTCGAA | 1 cut(s) | 1045 |
| BspT107I | GGYRCC | 1 cut(s) | 669 |
| BspTNI | GGTCTC | 1 cut(s) | 183 |
| BsrFI | RCCGGY | 1 cut(s) | 256 |
| BsrI | ACTGG | 2 cut(s) | 428, 1188 |
| BssAI | RCCGGY | 1 cut(s) | 256 |
| BssECI | CCNNGG | 2 cut(s) | 673, 1449 |
| BssMI | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 3 cut(s) | 437, 1073, 1451 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 192, 242, 401, 649 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 132, 536 |
| BstBI | TTCGAA | 1 cut(s) | 1045 |
| BstC8I | GCNNGC | 4 cut(s) | 167, 777, 1024, 1093 |
| BstDEI | CTNAG | 2 cut(s) | 200, 205 |
| BstDSI | CCRYGG | 1 cut(s) | 673 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1076 |
| BstF5I | GGATG | 4 cut(s) | 349, 1285, 1398, 1567 |
| BstKTI | GATC | 5 cut(s) | 463, 1126, 1207, 1489, 1517 |
| BstMAI | GTCTC | 1 cut(s) | 183 |
| BstMBI | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| BstMCI | CGRYCG | 1 cut(s) | 36 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 29, 132, 536, 591, 606, 678 |
| BstNI | CCWGG | 3 cut(s) | 437, 1073, 1451 |
| BstNSI | RCATGY | 1 cut(s) | 1318 |
| BstSCI | CCNGG | 3 cut(s) | 435, 1071, 1449 |
| BstSLI | GKGCMC | 1 cut(s) | 61 |
| BstV1I | GCAGC | 2 cut(s) | 690, 1006 |
| BstV2I | GAAGAC | 1 cut(s) | 1290 |
| BstX2I | RGATCY | 3 cut(s) | 1123, 1204, 1486 |
| BstYI | RGATCY | 3 cut(s) | 1123, 1204, 1486 |
| BsuRI | GGCC | 1 cut(s) | 1066 |
| BtgI | CCRYGG | 1 cut(s) | 673 |
| BtgZI | GCGATG | 1 cut(s) | 1089 |
| BtsCI | GGATG | 4 cut(s) | 349, 1285, 1398, 1567 |
| BtsI | GCAGTG | 2 cut(s) | 509, 1245 |
| BtsIMutI | CAGTG | 3 cut(s) | 509, 1245, 1584 |
| Cac8I | GCNNGC | 4 cut(s) | 167, 777, 1024, 1093 |
| Cfr10I | RCCGGY | 1 cut(s) | 256 |
| CseI | GACGC | 1 cut(s) | 1503 |
| Csp6I | GTAC | 6 cut(s) | 622, 892, 1006, 1082, 1446, 1527 |
| CviAII | CATG | 5 cut(s) | 1016, 1200, 1210, 1315, 1481 |
| CviQI | GTAC | 6 cut(s) | 622, 892, 1006, 1082, 1446, 1527 |
| DdeI | CTNAG | 2 cut(s) | 200, 205 |
| DpnI | GATC | 5 cut(s) | 462, 1125, 1206, 1488, 1516 |
| DpnII | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| DraIII | CACNNNGTG | 1 cut(s) | 97 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1291 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1291 |
| Ecl136II | GAGCTC | 2 cut(s) | 80, 204 |
| Eco147I | AGGCCT | 1 cut(s) | 1066 |
| Eco24I | GRGCYC | 2 cut(s) | 82, 206 |
| Eco31I | GGTCTC | 1 cut(s) | 183 |
| Eco53kI | GAGCTC | 2 cut(s) | 80, 204 |
| Eco57I | CTGAAG | 1 cut(s) | 821 |
| EcoICRI | GAGCTC | 2 cut(s) | 80, 204 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1076 |
| EcoRI | GAATTC | 1 cut(s) | 655 |
| EcoRII | CCWGG | 3 cut(s) | 435, 1071, 1449 |
| EcoT22I | ATGCAT | 2 cut(s) | 137, 524 |
| EcoT38I | GRGCYC | 2 cut(s) | 82, 206 |
| FaeI | CATG | 5 cut(s) | 1019, 1203, 1213, 1318, 1484 |
| FaqI | GGGAC | 1 cut(s) | 1085 |
| FatI | CATG | 5 cut(s) | 1015, 1199, 1209, 1314, 1480 |
| FauI | CCCGC | 1 cut(s) | 1015 |
| FauNDI | CATATG | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 3 cut(s) | 679, 1020, 1357 |
| FokI | GGATG | 4 cut(s) | 356, 1292, 1405, 1574 |
| FriOI | GRGCYC | 2 cut(s) | 82, 206 |
| Fsp4HI | GCNGC | 3 cut(s) | 679, 1020, 1357 |
| FspBI | CTAG | 3 cut(s) | 566, 1506, 1530 |
| GluI | GCNGC | 3 cut(s) | 679, 1020, 1357 |
| GsaI | CCCAGC | 2 cut(s) | 90, 768 |
| GsuI | CTGGAG | 1 cut(s) | 833 |
| HaeIII | GGCC | 1 cut(s) | 1066 |
| HapII | CCGG | 4 cut(s) | 29, 257, 856, 1059 |
| HgaI | GACGC | 1 cut(s) | 1503 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 5 cut(s) | 1019, 1203, 1213, 1318, 1484 |
| HinfI | GANTC | 6 cut(s) | 218, 282, 482, 769, 1112, 1333 |
| HpaII | CCGG | 4 cut(s) | 29, 257, 856, 1059 |
| HphI | GGTGA | 4 cut(s) | 180, 337, 1010, 1343 |
| Hpy166II | GTNNAC | 4 cut(s) | 195, 294, 624, 1260 |
| Hpy188I | TCNGA | 6 cut(s) | 158, 217, 367, 487, 801, 1179 |
| Hpy188III | TCNNGA | 6 cut(s) | 410, 500, 744, 812, 897, 1059 |
| Hpy8I | GTNNAC | 4 cut(s) | 195, 294, 624, 1260 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 71, 74 |
| HpyAV | CCTTC | 3 cut(s) | 313, 1056, 1211 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 192, 242, 401, 649 |
| HpyCH4IV | ACGT | 5 cut(s) | 69, 620, 808, 1372, 1554 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 29, 132, 536, 591, 606, 678 |
| HpyF3I | CTNAG | 2 cut(s) | 200, 205 |
| HpySE526I | ACGT | 5 cut(s) | 69, 620, 808, 1372, 1554 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 5 cut(s) | 1019, 1203, 1213, 1318, 1484 |
| Kpn2I | TCCGGA | 1 cut(s) | 1058 |
| Kzo9I | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| LmnI | GCTCC | 1 cut(s) | 814 |
| Lsp1109I | GCAGC | 2 cut(s) | 690, 1006 |
| LweI | GCATC | 3 cut(s) | 122, 526, 959 |
| MaeI | CTAG | 3 cut(s) | 566, 1506, 1530 |
| MaeII | ACGT | 5 cut(s) | 69, 620, 808, 1372, 1554 |
| MaeIII | GTNAC | 6 cut(s) | 356, 507, 804, 851, 998, 1555 |
| MalI | GATC | 5 cut(s) | 462, 1125, 1206, 1488, 1516 |
| MboI | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| MboII | GAAGA | 6 cut(s) | 699, 974, 1043, 1293, 1295, 1424 |
| MflI | RGATCY | 3 cut(s) | 1123, 1204, 1486 |
| MhlI | GDGCHC | 3 cut(s) | 61, 82, 206 |
| MlyI | GAGTC | 3 cut(s) | 778, 1121, 1327 |
| MmeI | TCCRAC | 3 cut(s) | 390, 899, 1393 |
| MnlI | CCTC | 6 cut(s) | 298, 658, 857, 952, 1072, 1398 |
| Mph1103I | ATGCAT | 2 cut(s) | 137, 524 |
| MroI | TCCGGA | 1 cut(s) | 1058 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1476 |
| MseI | TTAA | 4 cut(s) | 248, 735, 1308, 1566 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1255 |
| MspI | CCGG | 4 cut(s) | 29, 257, 856, 1059 |
| MspR9I | CCNGG | 3 cut(s) | 437, 1073, 1451 |
| Mva1269I | GAATGC | 3 cut(s) | 524, 609, 1269 |
| MvaI | CCWGG | 3 cut(s) | 437, 1073, 1451 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 29, 132, 536, 591, 606, 678 |
| NdeI | CATATG | 1 cut(s) | 465 |
| NdeII | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| NlaIII | CATG | 5 cut(s) | 1019, 1203, 1213, 1318, 1484 |
| NlaIV | GGNNCC | 2 cut(s) | 671, 1057 |
| NmuCI | GTSAC | 2 cut(s) | 507, 998 |
| NsiI | ATGCAT | 2 cut(s) | 137, 524 |
| NspI | RCATGY | 1 cut(s) | 1318 |
| NspV | TTCGAA | 1 cut(s) | 1045 |
| OliI | CACNNNNGTG | 1 cut(s) | 1255 |
| PceI | AGGCCT | 1 cut(s) | 1066 |
| PciI | ACATGT | 1 cut(s) | 1314 |
| PctI | GAATGC | 3 cut(s) | 524, 609, 1269 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1476 |
| PfeI | GAWTC | 3 cut(s) | 218, 282, 482 |
| PfoI | TCCNGGA | 1 cut(s) | 435 |
| PkrI | GCNGC | 3 cut(s) | 680, 1021, 1358 |
| PleI | GAGTC | 3 cut(s) | 777, 1120, 1327 |
| PpsI | GAGTC | 3 cut(s) | 777, 1120, 1327 |
| PscI | ACATGT | 1 cut(s) | 1314 |
| Psp124BI | GAGCTC | 2 cut(s) | 82, 206 |
| Psp6I | CCWGG | 3 cut(s) | 435, 1071, 1449 |
| PspFI | CCCAGC | 2 cut(s) | 86, 764 |
| PspGI | CCWGG | 3 cut(s) | 435, 1071, 1449 |
| PspN4I | GGNNCC | 2 cut(s) | 671, 1057 |
| PsuI | RGATCY | 3 cut(s) | 1123, 1204, 1486 |
| RsaI | GTAC | 6 cut(s) | 623, 893, 1007, 1083, 1447, 1528 |
| RsaNI | GTAC | 6 cut(s) | 622, 892, 1006, 1082, 1446, 1527 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1255 |
| SacI | GAGCTC | 2 cut(s) | 82, 206 |
| SaqAI | TTAA | 4 cut(s) | 248, 735, 1308, 1566 |
| SatI | GCNGC | 3 cut(s) | 679, 1020, 1357 |
| Sau3AI | GATC | 5 cut(s) | 460, 1123, 1204, 1486, 1514 |
| ScaI | AGTACT | 1 cut(s) | 893 |
| SchI | GAGTC | 3 cut(s) | 778, 1121, 1327 |
| ScrFI | CCNGG | 3 cut(s) | 437, 1073, 1451 |
| SduI | GDGCHC | 3 cut(s) | 61, 82, 206 |
| SfaNI | GCATC | 3 cut(s) | 122, 526, 959 |
| SfuI | TTCGAA | 1 cut(s) | 1045 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1255 |
| SmlI | CTYRAG | 2 cut(s) | 895, 1274 |
| SmoI | CTYRAG | 2 cut(s) | 895, 1274 |
| SseBI | AGGCCT | 1 cut(s) | 1066 |
| SsiI | CCGC | 6 cut(s) | 142, 341, 607, 1022, 1354, 1357 |
| SspI | AATATT | 1 cut(s) | 1427 |
| SspMI | CTAG | 3 cut(s) | 566, 1506, 1530 |
| SstI | GAGCTC | 2 cut(s) | 82, 206 |
| StuI | AGGCCT | 1 cut(s) | 1066 |
| StyD4I | CCNGG | 3 cut(s) | 435, 1071, 1449 |
| TaaI | ACNGT | 5 cut(s) | 37, 192, 242, 401, 649 |
| TaiI | ACGT | 5 cut(s) | 72, 623, 811, 1375, 1557 |
| TaqI | TCGA | 3 cut(s) | 76, 791, 1045 |
| TaqII | GACCGA | 1 cut(s) | 165 |
| TatI | WGTACW | 2 cut(s) | 891, 1005 |
| TauI | GCSGC | 1 cut(s) | 1359 |
| TfiI | GAWTC | 3 cut(s) | 218, 282, 482 |
| Tru1I | TTAA | 4 cut(s) | 248, 735, 1308, 1566 |
| Tru9I | TTAA | 4 cut(s) | 248, 735, 1308, 1566 |
| TscAI | CASTG | 3 cut(s) | 516, 1252, 1591 |
| TseFI | GTSAC | 2 cut(s) | 507, 998 |
| TseI | GCWGC | 2 cut(s) | 678, 1019 |
| Tsp45I | GTSAC | 2 cut(s) | 507, 998 |
| TspDTI | ATGAA | 7 cut(s) | 482, 495, 840, 948, 1004, 1296, 1469 |
| TspGWI | ACGGA | 1 cut(s) | 1574 |
| TspRI | CASTG | 3 cut(s) | 516, 1252, 1591 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1076 |
| XapI | RAATTY | 4 cut(s) | 546, 655, 1010, 1472 |
| XceI | RCATGY | 1 cut(s) | 1318 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1508 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1476 |
| XspI | CTAG | 3 cut(s) | 566, 1506, 1530 |
| ZraI | GACGTC | 1 cut(s) | 70 |
| ZrmI | AGTACT | 1 cut(s) | 893 |
| Zsp2I | ATGCAT | 2 cut(s) | 137, 524 |