tRNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20410 AT1G20410 |
| fragaria_vesca | FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 |
| malus_domestica | MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1 |
| prunus_persica | Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0303901 |
| rosa_laevigata | RLG00000011036 |
| rosa_multiflora | Rmu_co8406005.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00164290 |
| rosa_rugosa | Rorug06G0325700 Rorug06G0325800 |
| rosa_samantha | Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300 |
| rosa_wichuraiana | Rw6G038100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 675 |
| AccII | CGCG | 1 cut(s) | 93 |
| AciI | CCGC | 3 cut(s) | 613, 773, 1573 |
| AclWI | GGATC | 2 cut(s) | 161, 1549 |
| AcsI | RAATTY | 5 cut(s) | 552, 661, 1037, 1148, 1499 |
| AcuI | CTGAAG | 4 cut(s) | 36, 848, 935, 1155 |
| AfaI | GTAC | 3 cut(s) | 54, 920, 1474 |
| AfeI | AGCGCT | 1 cut(s) | 607 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1538 |
| AflIII | ACRYGT | 1 cut(s) | 224 |
| AgsI | TTSAA | 8 cut(s) | 222, 419, 575, 721, 764, 782, 1106, 1337 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 109, 1318 |
| AjnI | CCWGG | 1 cut(s) | 441 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 486, 518, 1066, 1098 |
| AluBI | AGCT | 4 cut(s) | 59, 408, 767, 806 |
| AluI | AGCT | 4 cut(s) | 59, 408, 767, 806 |
| Alw21I | GWGCWC | 1 cut(s) | 61 |
| AlwI | GGATC | 2 cut(s) | 161, 1549 |
| Aor51HI | AGCGCT | 1 cut(s) | 607 |
| AoxI | GGCC | 2 cut(s) | 751, 1091 |
| ApeKI | GCWGC | 2 cut(s) | 1046, 1375 |
| ApoI | RAATTY | 5 cut(s) | 552, 661, 1037, 1148, 1499 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1503, 1605 |
| AspLEI | GCGC | 4 cut(s) | 95, 608, 707, 1279 |
| AspS9I | GGNCC | 3 cut(s) | 73, 752, 1513 |
| AsuHPI | GGTGA | 4 cut(s) | 180, 340, 626, 1037 |
| AvaII | GGWCC | 2 cut(s) | 73, 1513 |
| BanI | GGYRCC | 1 cut(s) | 675 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 411, 443 |
| BbsI | GAAGAC | 2 cut(s) | 1317, 1344 |
| Bbv12I | GWGCWC | 1 cut(s) | 61 |
| BbvI | GCAGC | 2 cut(s) | 1033, 1362 |
| BccI | CCATC | 2 cut(s) | 242, 1138 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 45, 79 |
| BciT130I | CCWGG | 1 cut(s) | 443 |
| BfaI | CTAG | 4 cut(s) | 839, 995, 1280, 1533 |
| BfmI | CTRYAG | 2 cut(s) | 666, 1352 |
| BfoI | RGCGCY | 1 cut(s) | 609 |
| BisI | GCNGC | 3 cut(s) | 1047, 1376, 1574 |
| BlsI | GCNGC | 3 cut(s) | 1048, 1377, 1575 |
| BmcAI | AGTACT | 1 cut(s) | 920 |
| Bme1390I | CCNGG | 1 cut(s) | 443 |
| Bme18I | GGWCC | 2 cut(s) | 73, 1513 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 109, 1318 |
| BmgT120I | GGNCC | 3 cut(s) | 73, 752, 1513 |
| BmiI | GGNNCC | 3 cut(s) | 503, 677, 1514 |
| BmrFI | CCNGG | 1 cut(s) | 443 |
| BmsI | GCATC | 7 cut(s) | 122, 532, 624, 986, 1227, 1387, 1474 |
| BpiI | GAAGAC | 2 cut(s) | 1317, 1344 |
| BpuEI | CTTGAG | 2 cut(s) | 907, 1286 |
| BsaJI | CCNNGG | 3 cut(s) | 505, 679, 1516 |
| BsaWI | WCCGGW | 1 cut(s) | 882 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1538 |
| Bse1I | ACTGG | 4 cut(s) | 270, 372, 1191, 1215 |
| BseBI | CCWGG | 1 cut(s) | 443 |
| BseDI | CCNNGG | 3 cut(s) | 505, 679, 1516 |
| BseGI | GGATG | 6 cut(s) | 253, 547, 615, 1080, 1312, 1425 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1538 |
| BseMII | CTCAG | 2 cut(s) | 810, 1463 |
| BseNI | ACTGG | 4 cut(s) | 270, 372, 1191, 1215 |
| BseRI | GAGGAG | 1 cut(s) | 1001 |
| BseXI | GCAGC | 2 cut(s) | 1033, 1362 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| BshFI | GGCC | 2 cut(s) | 753, 1093 |
| BshNI | GGYRCC | 1 cut(s) | 675 |
| BsiHKAI | GWGCWC | 1 cut(s) | 61 |
| BsiSI | CCGG | 1 cut(s) | 883 |
| BslFI | GGGAC | 1 cut(s) | 1526 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1538 |
| BsmFI | GGGAC | 1 cut(s) | 1526 |
| BsmI | GAATGC | 1 cut(s) | 530 |
| BsnI | GGCC | 2 cut(s) | 753, 1093 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| BspACI | CCGC | 3 cut(s) | 613, 773, 1573 |
| BspANI | GGCC | 2 cut(s) | 753, 1093 |
| BspCNI | CTCAG | 2 cut(s) | 811, 1462 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspLI | GGNNCC | 3 cut(s) | 503, 677, 1514 |
| BspMAI | CTGCAG | 1 cut(s) | 1356 |
| BspPI | GGATC | 2 cut(s) | 161, 1549 |
| BspT107I | GGYRCC | 1 cut(s) | 675 |
| BsrI | ACTGG | 4 cut(s) | 270, 372, 1191, 1215 |
| BssECI | CCNNGG | 3 cut(s) | 505, 679, 1516 |
| BssMI | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| BssT1I | CCWWGG | 1 cut(s) | 505 |
| Bst2UI | CCWGG | 1 cut(s) | 443 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 192, 460, 638, 655 |
| Bst6I | CTCTTC | 2 cut(s) | 12, 1131 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 132, 542, 1351 |
| BstC8I | GCNNGC | 4 cut(s) | 804, 1051, 1120, 1479 |
| BstDEI | CTNAG | 2 cut(s) | 819, 1449 |
| BstDSI | CCRYGG | 1 cut(s) | 679 |
| BstF5I | GGATG | 6 cut(s) | 253, 547, 615, 1080, 1312, 1425 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstH2I | RGCGCY | 1 cut(s) | 609 |
| BstHHI | GCGC | 4 cut(s) | 95, 608, 707, 1279 |
| BstKTI | GATC | 4 cut(s) | 156, 454, 1410, 1544 |
| BstMBI | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 132, 542, 612, 1351, 1381 |
| BstNI | CCWGG | 1 cut(s) | 443 |
| BstNSI | RCATGY | 3 cut(s) | 167, 228, 1345 |
| BstSCI | CCNGG | 1 cut(s) | 441 |
| BstSFI | CTRYAG | 2 cut(s) | 666, 1352 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 2 cut(s) | 1033, 1362 |
| BstV2I | GAAGAC | 2 cut(s) | 1317, 1344 |
| BsuRI | GGCC | 2 cut(s) | 753, 1093 |
| BtgI | CCRYGG | 1 cut(s) | 679 |
| BtgZI | GCGATG | 1 cut(s) | 81 |
| BtsCI | GGATG | 6 cut(s) | 253, 547, 615, 1080, 1312, 1425 |
| BtsI | GCAGTG | 2 cut(s) | 102, 1272 |
| BtsIMutI | CAGTG | 5 cut(s) | 12, 102, 456, 1272, 1611 |
| Cac8I | GCNNGC | 4 cut(s) | 804, 1051, 1120, 1479 |
| CfoI | GCGC | 4 cut(s) | 95, 608, 707, 1279 |
| Cfr13I | GGNCC | 3 cut(s) | 73, 752, 1513 |
| CseI | GACGC | 2 cut(s) | 895, 1530 |
| Csp6I | GTAC | 3 cut(s) | 53, 919, 1473 |
| CviAII | CATG | 6 cut(s) | 164, 225, 601, 1043, 1342, 1508 |
| CviQI | GTAC | 3 cut(s) | 53, 919, 1473 |
| DdeI | CTNAG | 2 cut(s) | 819, 1449 |
| DpnI | GATC | 4 cut(s) | 155, 453, 1409, 1543 |
| DpnII | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| DriI | GACNNNNNGTC | 2 cut(s) | 109, 1318 |
| Eam1104I | CTCTTC | 2 cut(s) | 12, 1131 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 109, 1318 |
| EarI | CTCTTC | 2 cut(s) | 12, 1131 |
| Ecl136II | GAGCTC | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 1 cut(s) | 505 |
| Eco147I | AGGCCT | 1 cut(s) | 1093 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco47I | GGWCC | 2 cut(s) | 73, 1513 |
| Eco47III | AGCGCT | 1 cut(s) | 607 |
| Eco53kI | GAGCTC | 1 cut(s) | 59 |
| Eco57I | CTGAAG | 4 cut(s) | 36, 848, 935, 1155 |
| EcoICRI | GAGCTC | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1513 |
| EcoRI | GAATTC | 2 cut(s) | 661, 1499 |
| EcoRII | CCWGG | 1 cut(s) | 441 |
| EcoT14I | CCWWGG | 1 cut(s) | 505 |
| EcoT22I | ATGCAT | 3 cut(s) | 137, 530, 1347 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 505 |
| FaeI | CATG | 6 cut(s) | 167, 228, 604, 1046, 1345, 1511 |
| FaqI | GGGAC | 1 cut(s) | 1526 |
| FatI | CATG | 6 cut(s) | 163, 224, 600, 1042, 1341, 1507 |
| FauNDI | CATATG | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 3 cut(s) | 1047, 1376, 1574 |
| FokI | GGATG | 6 cut(s) | 260, 554, 602, 1087, 1319, 1432 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 3 cut(s) | 1047, 1376, 1574 |
| FspBI | CTAG | 4 cut(s) | 839, 995, 1280, 1533 |
| GlaI | GCGC | 4 cut(s) | 94, 607, 706, 1278 |
| GluI | GCNGC | 3 cut(s) | 1047, 1376, 1574 |
| HaeII | RGCGCY | 1 cut(s) | 609 |
| HaeIII | GGCC | 2 cut(s) | 753, 1093 |
| HapII | CCGG | 1 cut(s) | 883 |
| HgaI | GACGC | 2 cut(s) | 895, 1530 |
| HhaI | GCGC | 4 cut(s) | 95, 608, 707, 1279 |
| Hin1II | CATG | 6 cut(s) | 167, 228, 604, 1046, 1345, 1511 |
| Hin6I | GCGC | 4 cut(s) | 93, 606, 705, 1277 |
| HinP1I | GCGC | 4 cut(s) | 93, 606, 705, 1277 |
| HinfI | GANTC | 7 cut(s) | 218, 291, 488, 566, 934, 1139, 1360 |
| HpaII | CCGG | 1 cut(s) | 883 |
| HphI | GGTGA | 4 cut(s) | 180, 340, 626, 1037 |
| Hpy166II | GTNNAC | 1 cut(s) | 303 |
| Hpy188III | TCNNGA | 3 cut(s) | 416, 924, 1086 |
| Hpy8I | GTNNAC | 1 cut(s) | 303 |
| HpyAV | CCTTC | 3 cut(s) | 776, 1083, 1238 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 192, 460, 638, 655 |
| HpyCH4IV | ACGT | 2 cut(s) | 897, 1399 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 132, 542, 612, 1351, 1381 |
| HpyF3I | CTNAG | 2 cut(s) | 819, 1449 |
| HpySE526I | ACGT | 2 cut(s) | 897, 1399 |
| Hsp92II | CATG | 6 cut(s) | 167, 228, 604, 1046, 1345, 1511 |
| HspAI | GCGC | 4 cut(s) | 93, 606, 705, 1277 |
| Kzo9I | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| Lsp1109I | GCAGC | 2 cut(s) | 1033, 1362 |
| LweI | GCATC | 7 cut(s) | 122, 532, 624, 986, 1227, 1387, 1474 |
| MaeI | CTAG | 4 cut(s) | 839, 995, 1280, 1533 |
| MaeII | ACGT | 2 cut(s) | 897, 1399 |
| MaeIII | GTNAC | 3 cut(s) | 328, 831, 1582 |
| MalI | GATC | 4 cut(s) | 155, 453, 1409, 1543 |
| MboI | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| MfeI | CAATTG | 3 cut(s) | 435, 726, 759 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MlyI | GAGTC | 3 cut(s) | 943, 1148, 1354 |
| MmeI | TCCRAC | 3 cut(s) | 621, 926, 1420 |
| Mph1103I | ATGCAT | 3 cut(s) | 137, 530, 1347 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1503, 1605 |
| MseI | TTAA | 2 cut(s) | 39, 623 |
| MspI | CCGG | 1 cut(s) | 883 |
| MspR9I | CCNGG | 1 cut(s) | 443 |
| MunI | CAATTG | 3 cut(s) | 435, 726, 759 |
| Mva1269I | GAATGC | 1 cut(s) | 530 |
| MvaI | CCWGG | 1 cut(s) | 443 |
| MvnI | CGCG | 1 cut(s) | 93 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 132, 542, 612, 1351, 1381 |
| NdeI | CATATG | 1 cut(s) | 240 |
| NdeII | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| NlaIII | CATG | 6 cut(s) | 167, 228, 604, 1046, 1345, 1511 |
| NlaIV | GGNNCC | 3 cut(s) | 503, 677, 1514 |
| NmuCI | GTSAC | 1 cut(s) | 328 |
| NsiI | ATGCAT | 3 cut(s) | 137, 530, 1347 |
| NspI | RCATGY | 3 cut(s) | 167, 228, 1345 |
| PceI | AGGCCT | 1 cut(s) | 1093 |
| PciI | ACATGT | 1 cut(s) | 224 |
| PctI | GAATGC | 1 cut(s) | 530 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1503, 1605 |
| PfeI | GAWTC | 4 cut(s) | 218, 291, 488, 566 |
| PfoI | TCCNGGA | 1 cut(s) | 441 |
| PkrI | GCNGC | 3 cut(s) | 1048, 1377, 1575 |
| PleI | GAGTC | 3 cut(s) | 942, 1147, 1354 |
| PpsI | GAGTC | 3 cut(s) | 942, 1147, 1354 |
| PpuMI | RGGWCCY | 1 cut(s) | 1513 |
| PscI | ACATGT | 1 cut(s) | 224 |
| Psp124BI | GAGCTC | 1 cut(s) | 61 |
| Psp5II | RGGWCCY | 1 cut(s) | 1513 |
| Psp6I | CCWGG | 1 cut(s) | 441 |
| PspGI | CCWGG | 1 cut(s) | 441 |
| PspN4I | GGNNCC | 3 cut(s) | 503, 677, 1514 |
| PspPI | GGNCC | 3 cut(s) | 73, 752, 1513 |
| PspPPI | RGGWCCY | 1 cut(s) | 1513 |
| PstI | CTGCAG | 1 cut(s) | 1356 |
| RsaI | GTAC | 3 cut(s) | 54, 920, 1474 |
| RsaNI | GTAC | 3 cut(s) | 53, 919, 1473 |
| SacI | GAGCTC | 1 cut(s) | 61 |
| SaqAI | TTAA | 2 cut(s) | 39, 623 |
| SatI | GCNGC | 3 cut(s) | 1047, 1376, 1574 |
| Sau3AI | GATC | 4 cut(s) | 153, 451, 1407, 1541 |
| Sau96I | GGNCC | 3 cut(s) | 73, 752, 1513 |
| ScaI | AGTACT | 1 cut(s) | 920 |
| SchI | GAGTC | 3 cut(s) | 943, 1148, 1354 |
| ScrFI | CCNGG | 1 cut(s) | 443 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SfaNI | GCATC | 7 cut(s) | 122, 532, 624, 986, 1227, 1387, 1474 |
| SfcI | CTRYAG | 2 cut(s) | 666, 1352 |
| SinI | GGWCC | 2 cut(s) | 73, 1513 |
| SmlI | CTYRAG | 2 cut(s) | 922, 1301 |
| SmoI | CTYRAG | 2 cut(s) | 922, 1301 |
| SseBI | AGGCCT | 1 cut(s) | 1093 |
| SsiI | CCGC | 3 cut(s) | 613, 773, 1573 |
| SspMI | CTAG | 4 cut(s) | 839, 995, 1280, 1533 |
| SstI | GAGCTC | 1 cut(s) | 61 |
| StuI | AGGCCT | 1 cut(s) | 1093 |
| StyD4I | CCNGG | 1 cut(s) | 441 |
| StyI | CCWWGG | 1 cut(s) | 505 |
| TaaI | ACNGT | 5 cut(s) | 37, 192, 460, 638, 655 |
| TaiI | ACGT | 2 cut(s) | 900, 1402 |
| TaqI | TCGA | 1 cut(s) | 984 |
| TatI | WGTACW | 1 cut(s) | 918 |
| TauI | GCSGC | 1 cut(s) | 1576 |
| TfiI | GAWTC | 4 cut(s) | 218, 291, 488, 566 |
| Tru1I | TTAA | 2 cut(s) | 39, 623 |
| Tru9I | TTAA | 2 cut(s) | 39, 623 |
| TscAI | CASTG | 5 cut(s) | 19, 102, 463, 1279, 1618 |
| TseFI | GTSAC | 1 cut(s) | 328 |
| TseI | GCWGC | 2 cut(s) | 1046, 1375 |
| Tsp45I | GTSAC | 1 cut(s) | 328 |
| TspDTI | ATGAA | 8 cut(s) | 488, 501, 825, 867, 1031, 1323, 1492, 1496 |
| TspGWI | ACGGA | 3 cut(s) | 347, 608, 696 |
| TspRI | CASTG | 5 cut(s) | 19, 102, 463, 1279, 1618 |
| VpaK11BI | GGWCC | 2 cut(s) | 73, 1513 |
| XapI | RAATTY | 5 cut(s) | 552, 661, 1037, 1148, 1499 |
| XceI | RCATGY | 3 cut(s) | 167, 228, 1345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1535 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1503, 1605 |
| XspI | CTAG | 4 cut(s) | 839, 995, 1280, 1533 |
| ZrmI | AGTACT | 1 cut(s) | 920 |
| Zsp2I | ATGCAT | 3 cut(s) | 137, 530, 1347 |