tRNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20410 AT1G20410 |
| fragaria_vesca | FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 |
| malus_domestica | MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1 |
| prunus_persica | Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0303901 |
| rosa_laevigata | RLG00000011036 |
| rosa_multiflora | Rmu_co8406005.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00164290 |
| rosa_rugosa | Rorug06G0325700 Rorug06G0325800 |
| rosa_samantha | Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300 |
| rosa_wichuraiana | Rw6G038100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 72 |
| Acc16I | TGCGCA | 1 cut(s) | 54 |
| AccI | GTMKAC | 1 cut(s) | 102 |
| AccII | CGCG | 2 cut(s) | 93, 190 |
| AciI | CCGC | 6 cut(s) | 190, 305, 604, 758, 1366, 1611 |
| AclI | AACGTT | 1 cut(s) | 990 |
| AclWI | GGATC | 6 cut(s) | 161, 290, 553, 1224, 1506, 1534 |
| AcsI | RAATTY | 3 cut(s) | 543, 876, 1484 |
| AcuI | CTGAAG | 3 cut(s) | 833, 920, 1211 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfaI | GTAC | 4 cut(s) | 905, 1345, 1459, 1475 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1288, 1523 |
| AgeI | ACCGGT | 1 cut(s) | 256 |
| AgsI | TTSAA | 5 cut(s) | 410, 479, 566, 767, 797 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 109 |
| AjnI | CCWGG | 2 cut(s) | 432, 1461 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 477, 509, 1051, 1083 |
| AluBI | AGCT | 5 cut(s) | 752, 791, 1195, 1561, 1608 |
| AluI | AGCT | 5 cut(s) | 752, 791, 1195, 1561, 1608 |
| Alw26I | GTCTC | 1 cut(s) | 5 |
| AlwI | GGATC | 6 cut(s) | 161, 290, 553, 1224, 1506, 1534 |
| Ama87I | CYCGRG | 1 cut(s) | 907 |
| AoxI | GGCC | 2 cut(s) | 30, 1076 |
| ApeKI | GCWGC | 5 cut(s) | 1031, 1558, 1602, 1605, 1608 |
| ApoI | RAATTY | 3 cut(s) | 543, 876, 1484 |
| AseI | ATTAAT | 1 cut(s) | 711 |
| AsiGI | ACCGGT | 1 cut(s) | 256 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1488 |
| AspLEI | GCGC | 2 cut(s) | 55, 95 |
| AspS9I | GGNCC | 1 cut(s) | 111 |
| AsuHPI | GGTGA | 3 cut(s) | 617, 1022, 1355 |
| AvaI | CYCGRG | 1 cut(s) | 907 |
| AvaII | GGWCC | 1 cut(s) | 111 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 402, 434 |
| BbvI | GCAGC | 5 cut(s) | 1018, 1570, 1589, 1595, 1617 |
| BccI | CCATC | 1 cut(s) | 1358 |
| BceAI | ACGGC | 3 cut(s) | 80, 412, 1063 |
| BciT130I | CCWGG | 2 cut(s) | 434, 1463 |
| BciVI | GTATCC | 1 cut(s) | 424 |
| BcoDI | GTCTC | 1 cut(s) | 5 |
| BfaI | CTAG | 5 cut(s) | 87, 824, 980, 1518, 1587 |
| BfmI | CTRYAG | 2 cut(s) | 1556, 1603 |
| BfuI | GTATCC | 1 cut(s) | 424 |
| BisI | GCNGC | 6 cut(s) | 1032, 1559, 1603, 1606, 1609, 1612 |
| BlsI | GCNGC | 6 cut(s) | 1033, 1560, 1604, 1607, 1610, 1613 |
| BmcAI | AGTACT | 2 cut(s) | 905, 1345 |
| Bme1390I | CCNGG | 2 cut(s) | 434, 1463 |
| Bme18I | GGWCC | 1 cut(s) | 111 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 109 |
| BmeT110I | CYCGRG | 1 cut(s) | 907 |
| BmgT120I | GGNCC | 1 cut(s) | 111 |
| BmiI | GGNNCC | 1 cut(s) | 494 |
| BmrFI | CCNGG | 2 cut(s) | 434, 1463 |
| BmsI | GCATC | 8 cut(s) | 10, 122, 144, 523, 615, 745, 971, 1459 |
| BpuEI | CTTGAG | 3 cut(s) | 220, 1109, 1271 |
| Bsa29I | ATCGAT | 1 cut(s) | 1050 |
| BsaBI | GATNNNNATC | 1 cut(s) | 171 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaI | GGTCTC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 496, 1461 |
| BsaWI | WCCGGW | 2 cut(s) | 256, 867 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1288, 1523 |
| Bse118I | RCCGGY | 1 cut(s) | 256 |
| Bse1I | ACTGG | 2 cut(s) | 339, 834 |
| Bse3DI | GCAATG | 1 cut(s) | 700 |
| Bse8I | GATNNNNATC | 1 cut(s) | 171 |
| BseBI | CCWGG | 2 cut(s) | 434, 1463 |
| BseCI | ATCGAT | 1 cut(s) | 1050 |
| BseDI | CCNNGG | 3 cut(s) | 76, 496, 1461 |
| BseGI | GGATG | 5 cut(s) | 538, 606, 1065, 1297, 1410 |
| BseJI | GATNNNNATC | 1 cut(s) | 171 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1288, 1523 |
| BseMI | GCAATG | 1 cut(s) | 700 |
| BseMII | CTCAG | 2 cut(s) | 795, 1448 |
| BseNI | ACTGG | 2 cut(s) | 339, 834 |
| BseRI | GAGGAG | 1 cut(s) | 986 |
| BseXI | GCAGC | 5 cut(s) | 1018, 1570, 1589, 1595, 1617 |
| Bsh1236I | CGCG | 2 cut(s) | 93, 190 |
| BshFI | GGCC | 2 cut(s) | 32, 1078 |
| BshTI | ACCGGT | 1 cut(s) | 256 |
| BshVI | ATCGAT | 1 cut(s) | 1050 |
| BsiHKCI | CYCGRG | 1 cut(s) | 907 |
| BsiSI | CCGG | 4 cut(s) | 117, 257, 868, 1035 |
| BslFI | GGGAC | 1 cut(s) | 1097 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1288, 1523 |
| BsmAI | GTCTC | 1 cut(s) | 5 |
| BsmFI | GGGAC | 1 cut(s) | 1097 |
| BsmI | GAATGC | 1 cut(s) | 521 |
| BsnI | GGCC | 2 cut(s) | 32, 1078 |
| Bso31I | GGTCTC | 1 cut(s) | 5 |
| BsoBI | CYCGRG | 1 cut(s) | 907 |
| BspACI | CCGC | 6 cut(s) | 190, 305, 604, 758, 1366, 1611 |
| BspANI | GGCC | 2 cut(s) | 32, 1078 |
| BspCNI | CTCAG | 2 cut(s) | 796, 1447 |
| BspDI | ATCGAT | 1 cut(s) | 1050 |
| BspFNI | CGCG | 2 cut(s) | 93, 190 |
| BspLI | GGNNCC | 1 cut(s) | 494 |
| BspMAI | CTGCAG | 2 cut(s) | 1560, 1607 |
| BspPI | GGATC | 6 cut(s) | 161, 290, 553, 1224, 1506, 1534 |
| BspTNI | GGTCTC | 1 cut(s) | 5 |
| BsrDI | GCAATG | 1 cut(s) | 700 |
| BsrFI | RCCGGY | 1 cut(s) | 256 |
| BsrI | ACTGG | 2 cut(s) | 339, 834 |
| BssAI | RCCGGY | 1 cut(s) | 256 |
| BssECI | CCNNGG | 3 cut(s) | 76, 496, 1461 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 1 cut(s) | 496 |
| Bst2UI | CCWGG | 2 cut(s) | 434, 1463 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 144, 629, 646, 1580 |
| Bst6I | CTCTTC | 1 cut(s) | 1033 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 132, 533 |
| BstC8I | GCNNGC | 3 cut(s) | 30, 789, 1105 |
| BstDEI | CTNAG | 2 cut(s) | 804, 1434 |
| BstF5I | GGATG | 5 cut(s) | 538, 606, 1065, 1297, 1410 |
| BstFNI | CGCG | 2 cut(s) | 93, 190 |
| BstHHI | GCGC | 2 cut(s) | 55, 95 |
| BstMAI | GTCTC | 1 cut(s) | 5 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 29, 132, 533, 603, 1084, 1608, 1611 |
| BstNI | CCWGG | 2 cut(s) | 434, 1463 |
| BstSCI | CCNGG | 2 cut(s) | 432, 1461 |
| BstSFI | CTRYAG | 2 cut(s) | 1556, 1603 |
| BstUI | CGCG | 2 cut(s) | 93, 190 |
| BstV1I | GCAGC | 5 cut(s) | 1018, 1570, 1589, 1595, 1617 |
| BstX2I | RGATCY | 4 cut(s) | 282, 558, 1216, 1498 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 346 |
| BstYI | RGATCY | 4 cut(s) | 282, 558, 1216, 1498 |
| Bsu15I | ATCGAT | 1 cut(s) | 1050 |
| BsuI | GTATCC | 1 cut(s) | 424 |
| BsuRI | GGCC | 2 cut(s) | 32, 1078 |
| BsuTUI | ATCGAT | 1 cut(s) | 1050 |
| BtsCI | GGATG | 5 cut(s) | 538, 606, 1065, 1297, 1410 |
| BtsIMutI | CAGTG | 2 cut(s) | 346, 841 |
| Cac8I | GCNNGC | 3 cut(s) | 30, 789, 1105 |
| CfoI | GCGC | 2 cut(s) | 55, 95 |
| Cfr10I | RCCGGY | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 1 cut(s) | 111 |
| ClaI | ATCGAT | 1 cut(s) | 1050 |
| CseI | GACGC | 2 cut(s) | 880, 1515 |
| Csp6I | GTAC | 4 cut(s) | 904, 1344, 1458, 1474 |
| CspAI | ACCGGT | 1 cut(s) | 256 |
| CviAII | CATG | 4 cut(s) | 164, 1028, 1212, 1493 |
| CviQI | GTAC | 4 cut(s) | 904, 1344, 1458, 1474 |
| DdeI | CTNAG | 2 cut(s) | 804, 1434 |
| DriI | GACNNNNNGTC | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 1 cut(s) | 1033 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 109 |
| EarI | CTCTTC | 1 cut(s) | 1033 |
| Eco130I | CCWWGG | 1 cut(s) | 496 |
| Eco31I | GGTCTC | 1 cut(s) | 5 |
| Eco32I | GATATC | 1 cut(s) | 1048 |
| Eco47I | GGWCC | 1 cut(s) | 111 |
| Eco57I | CTGAAG | 3 cut(s) | 833, 920, 1211 |
| Eco88I | CYCGRG | 1 cut(s) | 907 |
| EcoRI | GAATTC | 1 cut(s) | 1484 |
| EcoRII | CCWGG | 2 cut(s) | 432, 1461 |
| EcoRV | GATATC | 1 cut(s) | 1048 |
| EcoT14I | CCWWGG | 1 cut(s) | 496 |
| EcoT22I | ATGCAT | 2 cut(s) | 137, 521 |
| ErhI | CCWWGG | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 167, 1031, 1215, 1496 |
| FaqI | GGGAC | 1 cut(s) | 1097 |
| FatI | CATG | 4 cut(s) | 163, 1027, 1211, 1492 |
| FblI | GTMKAC | 1 cut(s) | 102 |
| Fnu4HI | GCNGC | 6 cut(s) | 1032, 1559, 1603, 1606, 1609, 1612 |
| FokI | GGATG | 5 cut(s) | 545, 593, 1072, 1304, 1417 |
| Fsp4HI | GCNGC | 6 cut(s) | 1032, 1559, 1603, 1606, 1609, 1612 |
| FspBI | CTAG | 5 cut(s) | 87, 824, 980, 1518, 1587 |
| FspI | TGCGCA | 1 cut(s) | 54 |
| GlaI | GCGC | 2 cut(s) | 54, 94 |
| GluI | GCNGC | 6 cut(s) | 1032, 1559, 1603, 1606, 1609, 1612 |
| HaeIII | GGCC | 2 cut(s) | 32, 1078 |
| HapII | CCGG | 4 cut(s) | 117, 257, 868, 1035 |
| HgaI | GACGC | 2 cut(s) | 880, 1515 |
| HhaI | GCGC | 2 cut(s) | 55, 95 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 4 cut(s) | 167, 1031, 1215, 1496 |
| Hin6I | GCGC | 2 cut(s) | 53, 93 |
| HinP1I | GCGC | 2 cut(s) | 53, 93 |
| HinfI | GANTC | 5 cut(s) | 218, 479, 797, 919, 1124 |
| HpaII | CCGG | 4 cut(s) | 117, 257, 868, 1035 |
| HphI | GGTGA | 3 cut(s) | 617, 1022, 1355 |
| Hpy166II | GTNNAC | 4 cut(s) | 103, 294, 839, 1458 |
| Hpy188III | TCNNGA | 6 cut(s) | 199, 407, 824, 909, 1071, 1587 |
| Hpy8I | GTNNAC | 4 cut(s) | 103, 294, 839, 1458 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 74, 101 |
| HpyAV | CCTTC | 2 cut(s) | 1068, 1223 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 144, 629, 646, 1580 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 990, 1472 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 29, 132, 533, 603, 1084, 1608, 1611 |
| HpyF3I | CTNAG | 2 cut(s) | 804, 1434 |
| HpySE526I | ACGT | 3 cut(s) | 69, 990, 1472 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 4 cut(s) | 167, 1031, 1215, 1496 |
| HspAI | GCGC | 2 cut(s) | 53, 93 |
| Lsp1109I | GCAGC | 5 cut(s) | 1018, 1570, 1589, 1595, 1617 |
| LweI | GCATC | 8 cut(s) | 10, 122, 144, 523, 615, 745, 971, 1459 |
| MaeI | CTAG | 5 cut(s) | 87, 824, 980, 1518, 1587 |
| MaeII | ACGT | 3 cut(s) | 69, 990, 1472 |
| MaeIII | GTNAC | 2 cut(s) | 816, 1567 |
| MboII | GAAGA | 7 cut(s) | 171, 687, 986, 1050, 1055, 1305, 1429 |
| MflI | RGATCY | 4 cut(s) | 282, 558, 1216, 1498 |
| MlyI | GAGTC | 2 cut(s) | 928, 1118 |
| MmeI | TCCRAC | 2 cut(s) | 911, 1405 |
| MnlI | CCTC | 8 cut(s) | 71, 124, 432, 655, 831, 964, 1288, 1293 |
| Mph1103I | ATGCAT | 2 cut(s) | 137, 521 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1488 |
| MseI | TTAA | 4 cut(s) | 39, 711, 1320, 1479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1355 |
| MspA1I | CMGCKG | 1 cut(s) | 1608 |
| MspI | CCGG | 4 cut(s) | 117, 257, 868, 1035 |
| MspR9I | CCNGG | 2 cut(s) | 434, 1463 |
| Mva1269I | GAATGC | 1 cut(s) | 521 |
| MvaI | CCWGG | 2 cut(s) | 434, 1463 |
| MvnI | CGCG | 2 cut(s) | 93, 190 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 29, 132, 533, 603, 1084, 1608, 1611 |
| NlaIII | CATG | 4 cut(s) | 167, 1031, 1215, 1496 |
| NlaIV | GGNNCC | 1 cut(s) | 494 |
| NsbI | TGCGCA | 1 cut(s) | 54 |
| NsiI | ATGCAT | 2 cut(s) | 137, 521 |
| PaeR7I | CTCGAG | 1 cut(s) | 907 |
| PctI | GAATGC | 1 cut(s) | 521 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1488 |
| PfeI | GAWTC | 3 cut(s) | 218, 479, 797 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PfoI | TCCNGGA | 1 cut(s) | 432 |
| PinAI | ACCGGT | 1 cut(s) | 256 |
| PkrI | GCNGC | 6 cut(s) | 1033, 1560, 1604, 1607, 1610, 1613 |
| PleI | GAGTC | 2 cut(s) | 927, 1118 |
| PpsI | GAGTC | 2 cut(s) | 927, 1118 |
| PshBI | ATTAAT | 1 cut(s) | 711 |
| Psp1406I | AACGTT | 1 cut(s) | 990 |
| Psp6I | CCWGG | 2 cut(s) | 432, 1461 |
| PspGI | CCWGG | 2 cut(s) | 432, 1461 |
| PspN4I | GGNNCC | 1 cut(s) | 494 |
| PspPI | GGNCC | 1 cut(s) | 111 |
| PstI | CTGCAG | 2 cut(s) | 1560, 1607 |
| PsuI | RGATCY | 4 cut(s) | 282, 558, 1216, 1498 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| PvuII | CAGCTG | 1 cut(s) | 1608 |
| RsaI | GTAC | 4 cut(s) | 905, 1345, 1459, 1475 |
| RsaNI | GTAC | 4 cut(s) | 904, 1344, 1458, 1474 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1355 |
| SaqAI | TTAA | 4 cut(s) | 39, 711, 1320, 1479 |
| SatI | GCNGC | 6 cut(s) | 1032, 1559, 1603, 1606, 1609, 1612 |
| Sau96I | GGNCC | 1 cut(s) | 111 |
| ScaI | AGTACT | 2 cut(s) | 905, 1345 |
| SchI | GAGTC | 2 cut(s) | 928, 1118 |
| ScrFI | CCNGG | 2 cut(s) | 434, 1463 |
| SfaNI | GCATC | 8 cut(s) | 10, 122, 144, 523, 615, 745, 971, 1459 |
| SfcI | CTRYAG | 2 cut(s) | 1556, 1603 |
| Sfr274I | CTCGAG | 1 cut(s) | 907 |
| SinI | GGWCC | 1 cut(s) | 111 |
| SlaI | CTCGAG | 1 cut(s) | 907 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1355 |
| SmlI | CTYRAG | 4 cut(s) | 199, 907, 1088, 1286 |
| SmoI | CTYRAG | 4 cut(s) | 199, 907, 1088, 1286 |
| SsiI | CCGC | 6 cut(s) | 190, 305, 604, 758, 1366, 1611 |
| SspMI | CTAG | 5 cut(s) | 87, 824, 980, 1518, 1587 |
| StyD4I | CCNGG | 2 cut(s) | 432, 1461 |
| StyI | CCWWGG | 1 cut(s) | 496 |
| TaaI | ACNGT | 5 cut(s) | 37, 144, 629, 646, 1580 |
| TaiI | ACGT | 3 cut(s) | 72, 993, 1475 |
| TaqI | TCGA | 5 cut(s) | 740, 908, 969, 1050, 1563 |
| TatI | WGTACW | 2 cut(s) | 903, 1343 |
| TauI | GCSGC | 1 cut(s) | 1614 |
| TfiI | GAWTC | 3 cut(s) | 218, 479, 797 |
| Tru1I | TTAA | 4 cut(s) | 39, 711, 1320, 1479 |
| Tru9I | TTAA | 4 cut(s) | 39, 711, 1320, 1479 |
| TscAI | CASTG | 2 cut(s) | 346, 841 |
| TseI | GCWGC | 5 cut(s) | 1031, 1558, 1602, 1605, 1608 |
| TspDTI | ATGAA | 3 cut(s) | 479, 1016, 1481 |
| TspGWI | ACGGA | 2 cut(s) | 569, 599 |
| TspRI | CASTG | 2 cut(s) | 346, 841 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 111 |
| VspI | ATTAAT | 1 cut(s) | 711 |
| XapI | RAATTY | 3 cut(s) | 543, 876, 1484 |
| XbaI | TCTAGA | 2 cut(s) | 823, 1586 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1520 |
| XhoI | CTCGAG | 1 cut(s) | 907 |
| XmiI | GTMKAC | 1 cut(s) | 102 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1488 |
| XspI | CTAG | 5 cut(s) | 87, 824, 980, 1518, 1587 |
| ZraI | GACGTC | 1 cut(s) | 70 |
| ZrmI | AGTACT | 2 cut(s) | 905, 1345 |
| Zsp2I | ATGCAT | 2 cut(s) | 137, 521 |