MD08G1005300.v1.1

tRNA pseudouridine synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
473952 .. 480099
6148 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1005300.v1.1.491

Sequence Viewer

Length: 1632 bp
ATGGCAAACGAGACCCAAGATGCTTCGCAGGCCACCGTTAATGGCGACAATGCGCAATCTCTCTGCGACGTCGTCCGAGGGTTGCCTAGTCGCGCCGTCGTAGACTTATGGTCCTCCGGCGTATGCACCAGATGCATCTTACGGTTGTTTGGGATCAGAGAGCATGATTACTATCGTTCTTCACTATCGCGGTCAATCTTGAGTTCAGTTCTTGGAGATTCAGAGAAACATTTGGTGGATAGTAATGTTAGAGAACCGGTAGTTTGTAGAGTTTGTTTGGGGATCTTGCAGTTCACTTATTCTGCGGATAACAAGTTGGTGGTAGAAAGGGAGAGTGCCAGTGAATTGGCTGTTTCCATTTCCGATCTGATTAGGCAACAGGGCTTTCAGATTGACGGCTTTTCTCTTGAAGTATCCATACCTCCAATTATCCAGGAAAATGATCGTATTGCTTGGCTATATATGAAAAGAAAGTTTGAATCTGAACTTTGGTTCCAAGGAAAATCACTCTCTGAATGCATTTCTGCAAAGGATGCTCTAAAAATTTCTCTTACGGAGATCCTTGAAACAATGTTGGGTTGTAAGTCCAGCATAAGCAGTTTCCGCATCCGTTTGACATACACTCACCGTATAGCAACAATAACAGTTGATAGTTCTAATGAGGGGTGCAAAAGAAGAAAAACAGGTTCAGGCAATGGTTTGGACAGAATTAATGATGACATCAAATGCTCTGGGTTTTCGACAAGTGAAGCTGATGCGGTTGTTCAAAGGTCTTTTGTGAGTTTGCAAGCTATTGAATCGCCTGAGTGCCTGAAGTTACCTCTAGAGCAGTCCAGTGAACCTTGCTGTTTAGAGTTTCTCTGCTACCGGACGCAAATTTATGTTGGTGGGAGATACCTGAAGTACTCGAGAAATGTGAGTCAATCCTGTTGGATTATTGATGATGAGAGAATGGGAGAAGCATCTGTCGAGGAGATACTAGGTAGCAACGTTCTTCCTATATGTCGTGGTGATAACTACAAGTTTCATGCTGCCGGAAGAGAAGATATCGATGTAAGGATGTTGGGTTCTGGAAGGCCGTTCCTGCTTGAGATACAAAACGCTCGCCTTGTCCCGTCTGATGACTCTGTAAAAAGTTTGGAAATAGCGATAAATAACTTGGAAAATAAATTGGTAGGCGTGAAAAATCTGAAGCTGGTTGATAGTCAGTCATGGGATCTAATGCGTGAAGGGGAAGCAGAGAAACAGAAGCAGTATGTTGCGTTAGTGTGGATTTCTCGCCCTCTCAAGGATGAGGACTTGCATTTTATATCTTCACTTAAAGACACTCATATTCAGCAGAGTACTCCCATCAGGGTGCTTCACCGCCGAAGTCCATTAGAACGAGAAAAGATCATACATTGGATGAGAATTGAGAAGATTGTTGGAAGTTCTCAGTATTTTCTTTTGCATCTGTGTACCCAGGCTGGAACGTACATTAAGGAATTCGTTCATGGGGATCTTGGACGCACCCAACCTAGCATTGGATCAATTTTTAGTTGTAGAGCAGAGATACTGCAGCTCGATGTAACAGATGACCGTAATTCTAGAAAACCACCCTGCTGCAGCTGCGGCTTTTTGGGGTTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

544

Amino Acids

61.09

Weight (kDa)

6.14

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pus10_N_euk PF21237 89 - 209 9.6e-09 Eukaryotic Pus10, N-terminal
Pus10_C PF21238 294 - 525 3.1e-84 Pus10, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
Acc16I TGCGCA 1 cut(s) 54
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 93, 190
AciI CCGC 6 cut(s) 190, 305, 604, 758, 1366, 1611
AclI AACGTT 1 cut(s) 990
AclWI GGATC 6 cut(s) 161, 290, 553, 1224, 1506, 1534
AcsI RAATTY 3 cut(s) 543, 876, 1484
AcuI CTGAAG 3 cut(s) 833, 920, 1211
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 4 cut(s) 905, 1345, 1459, 1475
AfiI CCNNNNNNNGG 2 cut(s) 1288, 1523
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 5 cut(s) 410, 479, 566, 767, 797
AhdI GACNNNNNGTC 1 cut(s) 109
AjnI CCWGG 2 cut(s) 432, 1461
AloI GAACNNNNNNTCC 4 cut(s) 477, 509, 1051, 1083
AluBI AGCT 5 cut(s) 752, 791, 1195, 1561, 1608
AluI AGCT 5 cut(s) 752, 791, 1195, 1561, 1608
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 6 cut(s) 161, 290, 553, 1224, 1506, 1534
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 2 cut(s) 30, 1076
ApeKI GCWGC 5 cut(s) 1031, 1558, 1602, 1605, 1608
ApoI RAATTY 3 cut(s) 543, 876, 1484
AseI ATTAAT 1 cut(s) 711
AsiGI ACCGGT 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 1488
AspLEI GCGC 2 cut(s) 55, 95
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 617, 1022, 1355
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BbvI GCAGC 5 cut(s) 1018, 1570, 1589, 1595, 1617
BccI CCATC 1 cut(s) 1358
BceAI ACGGC 3 cut(s) 80, 412, 1063
BciT130I CCWGG 2 cut(s) 434, 1463
BciVI GTATCC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 5 cut(s) 87, 824, 980, 1518, 1587
BfmI CTRYAG 2 cut(s) 1556, 1603
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 6 cut(s) 1032, 1559, 1603, 1606, 1609, 1612
BlsI GCNGC 6 cut(s) 1033, 1560, 1604, 1607, 1610, 1613
BmcAI AGTACT 2 cut(s) 905, 1345
Bme1390I CCNGG 2 cut(s) 434, 1463
Bme18I GGWCC 1 cut(s) 111
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 2 cut(s) 434, 1463
BmsI GCATC 8 cut(s) 10, 122, 144, 523, 615, 745, 971, 1459
BpuEI CTTGAG 3 cut(s) 220, 1109, 1271
Bsa29I ATCGAT 1 cut(s) 1050
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 76, 496, 1461
BsaWI WCCGGW 2 cut(s) 256, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 1288, 1523
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 339, 834
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 2 cut(s) 434, 1463
BseCI ATCGAT 1 cut(s) 1050
BseDI CCNNGG 3 cut(s) 76, 496, 1461
BseGI GGATG 5 cut(s) 538, 606, 1065, 1297, 1410
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 1288, 1523
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 795, 1448
BseNI ACTGG 2 cut(s) 339, 834
BseRI GAGGAG 1 cut(s) 986
BseXI GCAGC 5 cut(s) 1018, 1570, 1589, 1595, 1617
Bsh1236I CGCG 2 cut(s) 93, 190
BshFI GGCC 2 cut(s) 32, 1078
BshTI ACCGGT 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 1050
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 4 cut(s) 117, 257, 868, 1035
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 2 cut(s) 1288, 1523
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 1097
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 2 cut(s) 32, 1078
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 907
BspACI CCGC 6 cut(s) 190, 305, 604, 758, 1366, 1611
BspANI GGCC 2 cut(s) 32, 1078
BspCNI CTCAG 2 cut(s) 796, 1447
BspDI ATCGAT 1 cut(s) 1050
BspFNI CGCG 2 cut(s) 93, 190
BspLI GGNNCC 1 cut(s) 494
BspMAI CTGCAG 2 cut(s) 1560, 1607
BspPI GGATC 6 cut(s) 161, 290, 553, 1224, 1506, 1534
BspTNI GGTCTC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 2 cut(s) 339, 834
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 76, 496, 1461
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 434, 1463
Bst4CI ACNGT 5 cut(s) 37, 144, 629, 646, 1580
Bst6I CTCTTC 1 cut(s) 1033
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 2 cut(s) 132, 533
BstC8I GCNNGC 3 cut(s) 30, 789, 1105
BstDEI CTNAG 2 cut(s) 804, 1434
BstF5I GGATG 5 cut(s) 538, 606, 1065, 1297, 1410
BstFNI CGCG 2 cut(s) 93, 190
BstHHI GCGC 2 cut(s) 55, 95
BstMAI GTCTC 1 cut(s) 5
BstMWI GCNNNNNNNGC 7 cut(s) 29, 132, 533, 603, 1084, 1608, 1611
BstNI CCWGG 2 cut(s) 434, 1463
BstSCI CCNGG 2 cut(s) 432, 1461
BstSFI CTRYAG 2 cut(s) 1556, 1603
BstUI CGCG 2 cut(s) 93, 190
BstV1I GCAGC 5 cut(s) 1018, 1570, 1589, 1595, 1617
BstX2I RGATCY 4 cut(s) 282, 558, 1216, 1498
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 4 cut(s) 282, 558, 1216, 1498
Bsu15I ATCGAT 1 cut(s) 1050
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 2 cut(s) 32, 1078
BsuTUI ATCGAT 1 cut(s) 1050
BtsCI GGATG 5 cut(s) 538, 606, 1065, 1297, 1410
BtsIMutI CAGTG 2 cut(s) 346, 841
Cac8I GCNNGC 3 cut(s) 30, 789, 1105
CfoI GCGC 2 cut(s) 55, 95
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 1050
CseI GACGC 2 cut(s) 880, 1515
Csp6I GTAC 4 cut(s) 904, 1344, 1458, 1474
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 4 cut(s) 164, 1028, 1212, 1493
CviQI GTAC 4 cut(s) 904, 1344, 1458, 1474
DdeI CTNAG 2 cut(s) 804, 1434
DriI GACNNNNNGTC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 1033
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 1033
Eco130I CCWWGG 1 cut(s) 496
Eco31I GGTCTC 1 cut(s) 5
Eco32I GATATC 1 cut(s) 1048
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 3 cut(s) 833, 920, 1211
Eco88I CYCGRG 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 1484
EcoRII CCWGG 2 cut(s) 432, 1461
EcoRV GATATC 1 cut(s) 1048
EcoT14I CCWWGG 1 cut(s) 496
EcoT22I ATGCAT 2 cut(s) 137, 521
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 4 cut(s) 167, 1031, 1215, 1496
FaqI GGGAC 1 cut(s) 1097
FatI CATG 4 cut(s) 163, 1027, 1211, 1492
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 6 cut(s) 1032, 1559, 1603, 1606, 1609, 1612
FokI GGATG 5 cut(s) 545, 593, 1072, 1304, 1417
Fsp4HI GCNGC 6 cut(s) 1032, 1559, 1603, 1606, 1609, 1612
FspBI CTAG 5 cut(s) 87, 824, 980, 1518, 1587
FspI TGCGCA 1 cut(s) 54
GlaI GCGC 2 cut(s) 54, 94
GluI GCNGC 6 cut(s) 1032, 1559, 1603, 1606, 1609, 1612
HaeIII GGCC 2 cut(s) 32, 1078
HapII CCGG 4 cut(s) 117, 257, 868, 1035
HgaI GACGC 2 cut(s) 880, 1515
HhaI GCGC 2 cut(s) 55, 95
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 4 cut(s) 167, 1031, 1215, 1496
Hin6I GCGC 2 cut(s) 53, 93
HinP1I GCGC 2 cut(s) 53, 93
HinfI GANTC 5 cut(s) 218, 479, 797, 919, 1124
HpaII CCGG 4 cut(s) 117, 257, 868, 1035
HphI GGTGA 3 cut(s) 617, 1022, 1355
Hpy166II GTNNAC 4 cut(s) 103, 294, 839, 1458
Hpy188III TCNNGA 6 cut(s) 199, 407, 824, 909, 1071, 1587
Hpy8I GTNNAC 4 cut(s) 103, 294, 839, 1458
Hpy99I CGWCG 3 cut(s) 71, 74, 101
HpyAV CCTTC 2 cut(s) 1068, 1223
HpyCH4III ACNGT 5 cut(s) 37, 144, 629, 646, 1580
HpyCH4IV ACGT 3 cut(s) 69, 990, 1472
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 132, 533, 603, 1084, 1608, 1611
HpyF3I CTNAG 2 cut(s) 804, 1434
HpySE526I ACGT 3 cut(s) 69, 990, 1472
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 4 cut(s) 167, 1031, 1215, 1496
HspAI GCGC 2 cut(s) 53, 93
Lsp1109I GCAGC 5 cut(s) 1018, 1570, 1589, 1595, 1617
LweI GCATC 8 cut(s) 10, 122, 144, 523, 615, 745, 971, 1459
MaeI CTAG 5 cut(s) 87, 824, 980, 1518, 1587
MaeII ACGT 3 cut(s) 69, 990, 1472
MaeIII GTNAC 2 cut(s) 816, 1567
MboII GAAGA 7 cut(s) 171, 687, 986, 1050, 1055, 1305, 1429
MflI RGATCY 4 cut(s) 282, 558, 1216, 1498
MlyI GAGTC 2 cut(s) 928, 1118
MmeI TCCRAC 2 cut(s) 911, 1405
MnlI CCTC 8 cut(s) 71, 124, 432, 655, 831, 964, 1288, 1293
Mph1103I ATGCAT 2 cut(s) 137, 521
MroXI GAANNNNTTC 1 cut(s) 1488
MseI TTAA 4 cut(s) 39, 711, 1320, 1479
MslI CAYNNNNRTG 1 cut(s) 1355
MspA1I CMGCKG 1 cut(s) 1608
MspI CCGG 4 cut(s) 117, 257, 868, 1035
MspR9I CCNGG 2 cut(s) 434, 1463
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 2 cut(s) 434, 1463
MvnI CGCG 2 cut(s) 93, 190
MwoI GCNNNNNNNGC 7 cut(s) 29, 132, 533, 603, 1084, 1608, 1611
NlaIII CATG 4 cut(s) 167, 1031, 1215, 1496
NlaIV GGNNCC 1 cut(s) 494
NsbI TGCGCA 1 cut(s) 54
NsiI ATGCAT 2 cut(s) 137, 521
PaeR7I CTCGAG 1 cut(s) 907
PctI GAATGC 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 1488
PfeI GAWTC 3 cut(s) 218, 479, 797
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 432
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 6 cut(s) 1033, 1560, 1604, 1607, 1610, 1613
PleI GAGTC 2 cut(s) 927, 1118
PpsI GAGTC 2 cut(s) 927, 1118
PshBI ATTAAT 1 cut(s) 711
Psp1406I AACGTT 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 432, 1461
PspGI CCWGG 2 cut(s) 432, 1461
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 2 cut(s) 1560, 1607
PsuI RGATCY 4 cut(s) 282, 558, 1216, 1498
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 1608
RsaI GTAC 4 cut(s) 905, 1345, 1459, 1475
RsaNI GTAC 4 cut(s) 904, 1344, 1458, 1474
RseI CAYNNNNRTG 1 cut(s) 1355
SaqAI TTAA 4 cut(s) 39, 711, 1320, 1479
SatI GCNGC 6 cut(s) 1032, 1559, 1603, 1606, 1609, 1612
Sau96I GGNCC 1 cut(s) 111
ScaI AGTACT 2 cut(s) 905, 1345
SchI GAGTC 2 cut(s) 928, 1118
ScrFI CCNGG 2 cut(s) 434, 1463
SfaNI GCATC 8 cut(s) 10, 122, 144, 523, 615, 745, 971, 1459
SfcI CTRYAG 2 cut(s) 1556, 1603
Sfr274I CTCGAG 1 cut(s) 907
SinI GGWCC 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 1355
SmlI CTYRAG 4 cut(s) 199, 907, 1088, 1286
SmoI CTYRAG 4 cut(s) 199, 907, 1088, 1286
SsiI CCGC 6 cut(s) 190, 305, 604, 758, 1366, 1611
SspMI CTAG 5 cut(s) 87, 824, 980, 1518, 1587
StyD4I CCNGG 2 cut(s) 432, 1461
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 5 cut(s) 37, 144, 629, 646, 1580
TaiI ACGT 3 cut(s) 72, 993, 1475
TaqI TCGA 5 cut(s) 740, 908, 969, 1050, 1563
TatI WGTACW 2 cut(s) 903, 1343
TauI GCSGC 1 cut(s) 1614
TfiI GAWTC 3 cut(s) 218, 479, 797
Tru1I TTAA 4 cut(s) 39, 711, 1320, 1479
Tru9I TTAA 4 cut(s) 39, 711, 1320, 1479
TscAI CASTG 2 cut(s) 346, 841
TseI GCWGC 5 cut(s) 1031, 1558, 1602, 1605, 1608
TspDTI ATGAA 3 cut(s) 479, 1016, 1481
TspGWI ACGGA 2 cut(s) 569, 599
TspRI CASTG 2 cut(s) 346, 841
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 111
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 3 cut(s) 543, 876, 1484
XbaI TCTAGA 2 cut(s) 823, 1586
XcmI CCANNNNNNNNNTGG 1 cut(s) 1520
XhoI CTCGAG 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 1488
XspI CTAG 5 cut(s) 87, 824, 980, 1518, 1587
ZraI GACGTC 1 cut(s) 70
ZrmI AGTACT 2 cut(s) 905, 1345
Zsp2I ATGCAT 2 cut(s) 137, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.