FvH4_2g38040

expansin-A11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014412
Physical Location & Seq
Forward (+)
27572499 .. 27574222
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38040.t1

Sequence Viewer

Length: 771 bp
ATGGCGGCCATGGCAAAGCTCATTTCTGCATTGGCAATCTTGCTCAGTGTTTTCACATATGTTAATGGATTCACAGCATCTGGGTTCACTAGAGGTCACGCCACGTTCTATGGAGGAAGTGATGCGTCAGGAACTATGGGTGGAGCTTGTGGATATGGGAATCTGTACTCGGCAGGGTATGGGACTAGGACTGCTGCTTTGAGTACTGCTTTGTTCAACGATGGAGGTTCATGCGGGCAATGCTATAGGATCATCTGTGATTATGCATCAGATTCAAAATGGTGCATTAAGGGAGCATCTGTGACTATTACAGCAACCAACTTTTGTCCTCCTAATTATGATCTTCCTAGCAACAATGGAGGCTGGTGCAATCCGCCTCTTCAGCATTTTGACATGGCTCAACCCGCTTGGGAGAAGATTGGAATCTACAAGGGTGGCATCGTCCCCGTCTTGTTCCAAAGGGTTCCATGTAAGAAGCATGGAGGAGTAAGGTTCGCCATTAATGGGAGGGACTACTTTGAGCTTGTTCTGATTAGCAATATGGGAGGAGCAGGATCTATTAAATCTGCCTACATTAAAGGCTCGAAAACCGGTTGGATGGCAATGTCAAGAAATTGGGGAGCAAACTGGCAGTCCAATGCCTACCTCAATGGCCAATCTCTGTCCTTCAAAGTCACCACAACCGACGGAGTAACTAAACTGTTTACAAACATTGTTCCCTCAAGTTGGAAATTTGGCCAAACCTTCTCCAGTTTAGTACAGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

257

Amino Acids

27.36

Weight (kDa)

9.26

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 64 - 151 5.1e-21 Lytic transglycolase
Expansin_C PF01357 163 - 240 1.5e-26 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20190 AT1G20190
fragaria_vesca FvH4_2g38040
malus_domestica MD03G1275400.v1.1 MD08G1009000.v1.1 MD15G1007700.v1.1
prunus_persica Prupe.1G360700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0303551
rosa_laevigata RLG00000011074
rosa_multiflora Rmu_ssc0000114.1_g000030
rosa_roxburghii Rroxscaffold_7G00164640
rosa_rugosa Rorug06G0322200
rosa_samantha Rh6AG436700 Rh6BG466700 Rh6CG448600 Rh6DG435400
rosa_wichuraiana Rw6G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 234, 374, 405
AclWI GGATC 2 cut(s) 257, 562
AcoI YGGCCR 3 cut(s) 6, 652, 736
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 3 cut(s) 167, 205, 759
AfiI CCNNNNNNNGG 2 cut(s) 504, 726
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 3 cut(s) 217, 276, 670
AluBI AGCT 3 cut(s) 19, 146, 523
AluI AGCT 3 cut(s) 19, 146, 523
AlwI GGATC 2 cut(s) 257, 562
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 3 cut(s) 6, 652, 736
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 731
ArsI GACNNNNNNTTYG 4 cut(s) 181, 213, 617, 649
AseI ATTAAT 1 cut(s) 501
AsiGI ACCGGT 1 cut(s) 590
AsuHPI GGTGA 1 cut(s) 667
BalI TGGCCA 2 cut(s) 654, 738
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 215, 592
BfaI CTAG 3 cut(s) 90, 186, 348
BfmI CTRYAG 1 cut(s) 244
BisI GCNGC 2 cut(s) 6, 195
BlsI GCNGC 2 cut(s) 7, 196
BmcAI AGTACT 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 465
BmsI GCATC 5 cut(s) 86, 112, 275, 305, 447
BpmI CTGGAG 1 cut(s) 733
BpuEI CTTGAG 1 cut(s) 706
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 726
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 2 cut(s) 632, 750
Bse3DI GCAATG 2 cut(s) 245, 609
Bse8I GATNNNNATC 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 603
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 504, 726
BseMI GCAATG 2 cut(s) 245, 609
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 632, 750
BseRI GAGGAG 2 cut(s) 498, 561
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 3 cut(s) 8, 654, 738
BshTI ACCGGT 1 cut(s) 590
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 3 cut(s) 196, 428, 524
BslI CCNNNNNNNGG 2 cut(s) 504, 726
BsmFI GGGAC 3 cut(s) 196, 428, 524
BsnI GGCC 3 cut(s) 8, 654, 738
Bsp143I GATC 3 cut(s) 249, 340, 554
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 4 cut(s) 5, 234, 374, 405
BspANI GGCC 3 cut(s) 8, 654, 738
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 2 cut(s) 257, 562
BsrDI GCAATG 2 cut(s) 245, 609
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 2 cut(s) 632, 750
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 3 cut(s) 249, 340, 554
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 702, 762
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 603
BstKTI GATC 3 cut(s) 252, 343, 557
BstMBI GATC 3 cut(s) 249, 340, 554
BstMWI GCNNNNNNNGC 4 cut(s) 11, 240, 382, 404
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuRI GGCC 3 cut(s) 8, 654, 738
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 590
CseI GACGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 166, 204, 758
CspAI ACCGGT 1 cut(s) 590
CviAII CATG 5 cut(s) 10, 231, 394, 468, 479
CviJI RGCY 9 cut(s) 8, 19, 146, 363, 398, 523, 582, 654, 738
CviKI_1 RGCY 9 cut(s) 8, 19, 146, 363, 398, 523, 582, 654, 738
CviQI GTAC 3 cut(s) 166, 204, 758
DdeI CTNAG 1 cut(s) 44
DpnI GATC 3 cut(s) 251, 342, 556
DpnII GATC 3 cut(s) 249, 340, 554
EaeI YGGCCR 3 cut(s) 6, 652, 736
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 5 cut(s) 13, 234, 397, 471, 482
FaqI GGGAC 3 cut(s) 196, 428, 524
FatI CATG 5 cut(s) 9, 230, 393, 467, 478
FauI CCCGC 2 cut(s) 227, 412
FauNDI CATATG 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 6, 195
FokI GGATG 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 6, 195
FspBI CTAG 3 cut(s) 90, 186, 348
GluI GCNGC 2 cut(s) 6, 195
GsuI CTGGAG 1 cut(s) 733
HaeIII GGCC 3 cut(s) 8, 654, 738
HapII CCGG 1 cut(s) 591
HgaI GACGC 1 cut(s) 114
Hin1II CATG 5 cut(s) 13, 234, 397, 471, 482
HinfI GANTC 4 cut(s) 69, 160, 272, 423
HpaII CCGG 1 cut(s) 591
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 2 cut(s) 87, 705
Hpy188I TCNGA 2 cut(s) 271, 531
Hpy188III TCNNGA 2 cut(s) 129, 609
Hpy8I GTNNAC 2 cut(s) 87, 705
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 2 cut(s) 676, 754
HpyCH4III ACNGT 2 cut(s) 702, 762
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 29, 266, 285, 369
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 240, 382, 404
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 5 cut(s) 13, 234, 397, 471, 482
Kzo9I GATC 3 cut(s) 249, 340, 554
LmnI GCTCC 4 cut(s) 143, 293, 548, 620
LpnPI CCDG 8 cut(s) 66, 114, 159, 349, 537, 604, 613, 763
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 5 cut(s) 86, 112, 275, 305, 447
MaeI CTAG 3 cut(s) 90, 186, 348
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 4 cut(s) 95, 301, 673, 691
MalI GATC 3 cut(s) 251, 342, 556
MboI GATC 3 cut(s) 249, 340, 554
MboII GAAGA 3 cut(s) 335, 371, 427
MflI RGATCY 1 cut(s) 554
MlsI TGGCCA 2 cut(s) 654, 738
MluCI AATT 3 cut(s) 334, 613, 731
MluNI TGGCCA 2 cut(s) 654, 738
MmeI TCCRAC 2 cut(s) 575, 707
Mox20I TGGCCA 2 cut(s) 654, 738
Mph1103I ATGCAT 1 cut(s) 268
MscI TGGCCA 2 cut(s) 654, 738
MseI TTAA 6 cut(s) 63, 288, 501, 561, 576, 769
Msp20I TGGCCA 2 cut(s) 654, 738
MspI CCGG 1 cut(s) 591
MwoI GCNNNNNNNGC 4 cut(s) 11, 240, 382, 404
NcoI CCATGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 58
NdeII GATC 3 cut(s) 249, 340, 554
NlaIII CATG 5 cut(s) 13, 234, 397, 471, 482
NlaIV GGNNCC 1 cut(s) 465
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 3 cut(s) 95, 301, 673
NsiI ATGCAT 1 cut(s) 268
PfeI GAWTC 4 cut(s) 69, 160, 272, 423
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 2 cut(s) 7, 196
PshBI ATTAAT 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 3 cut(s) 167, 205, 759
RsaNI GTAC 3 cut(s) 166, 204, 758
SaqAI TTAA 6 cut(s) 63, 288, 501, 561, 576, 769
SatI GCNGC 2 cut(s) 6, 195
Sau3AI GATC 3 cut(s) 249, 340, 554
ScaI AGTACT 1 cut(s) 205
SetI ASST 9 cut(s) 21, 97, 107, 148, 229, 494, 525, 648, 746
SfaNI GCATC 5 cut(s) 86, 112, 275, 305, 447
SfcI CTRYAG 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
Sse9I AATT 3 cut(s) 334, 613, 731
SsiI CCGC 4 cut(s) 5, 234, 374, 405
SspMI CTAG 3 cut(s) 90, 186, 348
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 702, 762
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 584
TasI AATT 3 cut(s) 334, 613, 731
TatI WGTACW 3 cut(s) 165, 203, 757
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 69, 160, 272, 423
Tru1I TTAA 6 cut(s) 63, 288, 501, 561, 576, 769
Tru9I TTAA 6 cut(s) 63, 288, 501, 561, 576, 769
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 3 cut(s) 95, 301, 673
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 3 cut(s) 95, 301, 673
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 1 cut(s) 52
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 731
XspI CTAG 3 cut(s) 90, 186, 348
ZrmI AGTACT 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.