MD03G1275400.v1.1

expansin-A11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0014412
Physical Location & Seq
Reverse (-)
35828277 .. 35828983
707 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1275400.v1.1.491

Sequence Viewer

Length: 378 bp
ATGGCTCAGCCTGCCTGGGAAAAGATCGGAATTTACAGCGGTGGCATCATCCCCGTCCTGTTCCAAAGGGTACCATGCAAGAAGAAAGGCGGTGTGAGATTCACAATAAATGGGAGGAACTACTTTGAGCTTGTGCTGATCACCAATGTCGGAGGAGCTGGATCTATCACGTCTGCTTACATTAAAGGATCCCAAACTGGTTGGATGGCAATGTCCATGAATTGGGGAGCAAACTGGCAGTCCAACGCCTACCTCAACGGCCAATCTCTGTCGTTCAGAGTCACCACAACCGACGGCGAAACTCAACTGTTTAACGACATTGCTCCCGCCAACTGGGGATTTGGCCAAACGTTCACCAGCAACGTACAGTTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

126

Amino Acids

13.67

Weight (kDa)

9.52

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Expansin_C PF01357 32 - 109 3.5e-28 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20190 AT1G20190
fragaria_vesca FvH4_2g38040
malus_domestica MD03G1275400.v1.1 MD08G1009000.v1.1 MD15G1007700.v1.1
prunus_persica Prupe.1G360700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0303551
rosa_laevigata RLG00000011074
rosa_multiflora Rmu_ssc0000114.1_g000030
rosa_roxburghii Rroxscaffold_7G00164640
rosa_rugosa Rorug06G0322200
rosa_samantha Rh6AG436700 Rh6BG466700 Rh6CG448600 Rh6DG435400
rosa_wichuraiana Rw6G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 222
AciI CCGC 3 cut(s) 39, 90, 327
AclI AACGTT 1 cut(s) 350
AclWI GGATC 3 cut(s) 169, 183, 196
AcoI YGGCCR 2 cut(s) 259, 343
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 2 cut(s) 72, 366
AfiI CCNNNNNNNGG 2 cut(s) 222, 333
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 130, 158
AluI AGCT 2 cut(s) 130, 158
AlwI GGATC 3 cut(s) 169, 183, 196
AoxI GGCC 2 cut(s) 259, 343
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp718I GGTACC 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 133, 274, 346
BalI TGGCCA 1 cut(s) 345
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 70
BccI CCATC 1 cut(s) 199
BceAI ACGGC 2 cut(s) 274, 310
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 72, 190
BmrFI CCNGG 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 333
Bse1I ACTGG 3 cut(s) 202, 239, 338
Bse3DI GCAATG 2 cut(s) 216, 318
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 48, 210
BseLI CCNNNNNNNGG 2 cut(s) 222, 333
BseMI GCAATG 2 cut(s) 216, 318
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 3 cut(s) 202, 239, 338
BseRI GAGGAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 261, 345
BshNI GGYRCC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 222, 333
BsnI GGCC 2 cut(s) 261, 345
Bsp143I GATC 4 cut(s) 24, 138, 161, 188
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 3 cut(s) 39, 90, 327
BspANI GGCC 2 cut(s) 261, 345
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 72, 190
BspPI GGATC 3 cut(s) 169, 183, 196
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 2 cut(s) 216, 318
BsrI ACTGG 3 cut(s) 202, 239, 338
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 4 cut(s) 24, 138, 161, 188
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 309, 369
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 48, 210
BstKTI GATC 4 cut(s) 27, 141, 164, 191
BstMBI GATC 4 cut(s) 24, 138, 161, 188
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 161, 188
BstYI RGATCY 2 cut(s) 161, 188
BsuRI GGCC 2 cut(s) 261, 345
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 48, 210
Cac8I GCNNGC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 71, 365
CviAII CATG 2 cut(s) 75, 217
CviJI RGCY 6 cut(s) 5, 10, 130, 158, 261, 345
CviKI_1 RGCY 6 cut(s) 5, 10, 130, 158, 261, 345
CviQI GTAC 2 cut(s) 71, 365
DdeI CTNAG 1 cut(s) 6
DpnI GATC 4 cut(s) 26, 140, 163, 190
DpnII GATC 4 cut(s) 24, 138, 161, 188
EaeI YGGCCR 2 cut(s) 259, 343
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 78, 220
FaiI YATR 3 cut(s) 76, 218, 376
FatI CATG 2 cut(s) 74, 216
FauI CCCGC 1 cut(s) 334
FbaI TGATCA 1 cut(s) 138
FokI GGATG 2 cut(s) 35, 217
HaeIII GGCC 2 cut(s) 261, 345
Hin1II CATG 2 cut(s) 78, 220
HinfI GANTC 2 cut(s) 99, 279
HphI GGTGA 3 cut(s) 133, 274, 346
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 29, 152, 278
Hpy8I GTNNAC 1 cut(s) 354
Hpy99I CGWCG 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 309, 369
HpyCH4IV ACGT 3 cut(s) 170, 350, 363
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 3 cut(s) 170, 350, 363
Hsp92II CATG 2 cut(s) 78, 220
KpnI GGTACC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 24, 138, 161, 188
LmnI GCTCC 3 cut(s) 155, 227, 328
LpnPI CCDG 8 cut(s) 24, 28, 71, 144, 183, 220, 319, 370
LweI GCATC 1 cut(s) 54
MaeII ACGT 3 cut(s) 170, 350, 363
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 26, 140, 163, 190
MboI GATC 4 cut(s) 24, 138, 161, 188
MboII GAAGA 1 cut(s) 94
MflI RGATCY 2 cut(s) 161, 188
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 2 cut(s) 30, 220
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 3 cut(s) 130, 182, 267
MnlI CCTC 3 cut(s) 108, 146, 263
Mox20I TGGCCA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 345
MseI TTAA 2 cut(s) 183, 312
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 24, 138, 161, 188
NlaIII CATG 2 cut(s) 78, 220
NlaIV GGNNCC 2 cut(s) 72, 190
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 222
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 72, 190
PsuI RGATCY 2 cut(s) 161, 188
RsaI GTAC 2 cut(s) 72, 366
RsaNI GTAC 2 cut(s) 71, 365
SaqAI TTAA 2 cut(s) 183, 312
Sau3AI GATC 4 cut(s) 24, 138, 161, 188
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 16
SetI ASST 6 cut(s) 132, 160, 173, 255, 353, 366
SfaNI GCATC 1 cut(s) 54
Sse9I AATT 2 cut(s) 30, 220
SsiI CCGC 3 cut(s) 39, 90, 327
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 309, 369
TaiI ACGT 3 cut(s) 173, 353, 366
TasI AATT 2 cut(s) 30, 220
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 183, 312
Tru9I TTAA 2 cut(s) 183, 312
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 222
XapI RAATTY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.