Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0014412

Physical Location & Seq

Genomic Coordinates Forward (+)

671848 .. 673331

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1009000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGAAGCTCATTTTTCCATTAGCAATCTTTCTTGGAGTATGTAGTCTCTCGACATATGTCACTGCATTCACAGCATCTGCCTGGAGTAGAGGTCATGCCACATTCTATGGAGGCAGTGATGCCTCTGGAACTATGGGGGGAGCTTGTGGATATGGCAATCTGTATTCCACCAGGTACGGGACTAGGACGGCGGCTTTAAGTACCGCCCTGTTTAACGACGGAGCTTCTTGTGGACAATGCTACAAGATCATATGCGACTTCAAAACAGATCCTAGATGGTGCGTAAAAGGAAGGTCCGTGACAATTACTGCAACAAACTTTTGTCCTCCCAATTCTAATCTTCCAAACGACAATGGAGGATGGTGCAACCCACCCCTTCAGCATTTCGACATGGCTCAGCCTGCCTGGGAAAAGATCGGGATTTACAGAGGTGGCATCATCCCTGTCTTGTTCCAAAGGGTACCATGCAAGAAGAAGGGCGGTGTGAGGTTCACAATAAATGGGAGAAACTACTTTGAGCTTGTGCTGATCACCAATGTCGGAGGAGCCGGATCTATCCAATCTGCTTACATTAAAGGATCCAACACTGGCTGGATTGCAATGTCGAGGAATTGGGGAGCAAACTGGCAGTCCAACGCCTACCTCAACGGCCAATCTCTGTCGTTCAGAGTCACCACAACCGACGGCGAAACTCAACTGTTTAACAACATTGTTCCCGCGAACTGGGGATTTGGCCAAACGTTCGCCAGCCAAGTACAGTTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

257

Amino Acids

27.71

Weight (kDa)

9.28

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	35 - 157	7.5e-07	EXPB1-like domain 1
DPBB_1	PF03330	64 - 151	1.3e-21	Lytic transglycolase
Expansin_C	PF01357	163 - 240	4.1e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20190 AT1G20190
fragaria_vesca	FvH4_2g38040
malus_domestica	MD03G1275400.v1.1 MD08G1009000.v1.1 MD15G1007700.v1.1
prunus_persica	Prupe.1G360700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303551
rosa_laevigata	RLG00000011074
rosa_multiflora	Rmu_ssc0000114.1_g000030
rosa_roxburghii	Rroxscaffold_7G00164640
rosa_rugosa	Rorug06G0322200
rosa_samantha	Rh6AG436700 Rh6BG466700 Rh6CG448600 Rh6DG435400
rosa_wichuraiana	Rw6G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	463
AccII	CGCG	1 cut(s)	722
AciI	CCGC	4 cut(s)	194, 207, 483, 720
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	4 cut(s)	266, 562, 576, 589
AcoI	YGGCCR	2 cut(s)	652, 736
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	4 cut(s)	179, 205, 465, 759
AfiI	CCNNNNNNNGG	2 cut(s)	180, 726
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	83, 173, 407
AluBI	AGCT	4 cut(s)	10, 146, 227, 523
AluI	AGCT	4 cut(s)	10, 146, 227, 523
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	4 cut(s)	266, 562, 576, 589
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	652, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
Asp718I	GGTACC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	526, 667
AvaII	GGWCC	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	738
BamHI	GGATCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	463
BccI	CCATC	2 cut(s)	273, 357
BceAI	ACGGC	3 cut(s)	207, 667, 703
BciT130I	CCWGG	3 cut(s)	85, 175, 409
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	186, 276
BisI	GCNGC	1 cut(s)	195
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	85, 175, 409
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	465, 550, 583
BmrFI	CCNGG	3 cut(s)	85, 175, 409
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	3 cut(s)	86, 112, 447
BmuI	ACTGGG	1 cut(s)	736
BoxI	GACNNNNGTC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 726
Bse1I	ACTGG	3 cut(s)	595, 632, 731
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	3 cut(s)	85, 175, 409
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	2 cut(s)	368, 441
BseLI	CCNNNNNNNGG	2 cut(s)	180, 726
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	3 cut(s)	595, 632, 731
BseRI	GAGGAG	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	2 cut(s)	654, 738
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	180, 726
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	654, 738
Bsp143I	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	4 cut(s)	194, 207, 483, 720
BspANI	GGCC	2 cut(s)	654, 738
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	722
BspLI	GGNNCC	3 cut(s)	465, 550, 583
BspPI	GGATC	4 cut(s)	266, 562, 576, 589
BspT107I	GGYRCC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	595, 632, 731
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
Bst2UI	CCWGG	3 cut(s)	85, 175, 409
Bst4CI	ACNGT	2 cut(s)	702, 762
BstC8I	GCNNGC	2 cut(s)	405, 751
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	368, 441
BstFNI	CGCG	1 cut(s)	722
BstKTI	GATC	6 cut(s)	252, 274, 420, 534, 557, 584
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 404
BstNI	CCWGG	3 cut(s)	85, 175, 409
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	83, 173, 407
BstUI	CGCG	1 cut(s)	722
BstX2I	RGATCY	3 cut(s)	271, 554, 581
BstYI	RGATCY	3 cut(s)	271, 554, 581
BsuRI	GGCC	2 cut(s)	654, 738
BtsCI	GGATG	2 cut(s)	368, 441
BtsI	GCAGTG	2 cut(s)	63, 124
BtsIMutI	CAGTG	3 cut(s)	63, 124, 588
Cac8I	GCNNGC	2 cut(s)	405, 751
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	173
Csp6I	GTAC	4 cut(s)	178, 204, 464, 758
CviAII	CATG	3 cut(s)	98, 394, 468
CviQI	GTAC	4 cut(s)	178, 204, 464, 758
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	6 cut(s)	251, 273, 419, 533, 556, 583
DpnII	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
EaeI	YGGCCR	2 cut(s)	652, 736
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	83, 173, 407
FaeI	CATG	3 cut(s)	101, 397, 471
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	3 cut(s)	97, 393, 467
FauI	CCCGC	1 cut(s)	727
FauNDI	CATATG	2 cut(s)	58, 254
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	375, 428
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	186, 276
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	654, 738
HapII	CCGG	1 cut(s)	552
Hin1II	CATG	3 cut(s)	101, 397, 471
HinfI	GANTC	1 cut(s)	672
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	2 cut(s)	526, 667
Hpy166II	GTNNAC	2 cut(s)	236, 495
Hpy188I	TCNGA	2 cut(s)	545, 671
Hpy188III	TCNNGA	3 cut(s)	52, 129, 421
Hpy8I	GTNNAC	2 cut(s)	236, 495
Hpy99I	CGWCG	2 cut(s)	224, 689
HpyAV	CCTTC	3 cut(s)	288, 389, 472
HpyCH4III	ACNGT	2 cut(s)	702, 762
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	5 cut(s)	68, 314, 369, 471, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 404
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	3 cut(s)	101, 397, 471
KpnI	GGTACC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
LmnI	GCTCC	4 cut(s)	143, 224, 548, 620
LweI	GCATC	3 cut(s)	86, 112, 447
MabI	ACCWGGT	1 cut(s)	173
MaeI	CTAG	2 cut(s)	186, 276
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	3 cut(s)	61, 301, 673
MalI	GATC	6 cut(s)	251, 273, 419, 533, 556, 583
MboI	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
MboII	GAAGA	2 cut(s)	335, 487
MflI	RGATCY	3 cut(s)	271, 554, 581
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	3 cut(s)	306, 334, 613
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	681
MmeI	TCCRAC	3 cut(s)	523, 609, 660
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	4 cut(s)	200, 216, 576, 705
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	3 cut(s)	85, 175, 409
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	3 cut(s)	85, 175, 409
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	74, 404
NdeI	CATATG	2 cut(s)	58, 254
NdeII	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
NlaIII	CATG	3 cut(s)	101, 397, 471
NlaIV	GGNNCC	3 cut(s)	465, 550, 583
NmuCI	GTSAC	3 cut(s)	61, 301, 673
PctI	GAATGC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
PshAI	GACNNNNGTC	1 cut(s)	59
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	83, 173, 407
PspGI	CCWGG	3 cut(s)	83, 173, 407
PspN4I	GGNNCC	3 cut(s)	465, 550, 583
PspPI	GGNCC	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	271, 554, 581
RsaI	GTAC	4 cut(s)	179, 205, 465, 759
RsaNI	GTAC	4 cut(s)	178, 204, 464, 758
SaqAI	TTAA	4 cut(s)	200, 216, 576, 705
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	6 cut(s)	249, 271, 417, 531, 554, 581
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	681
ScrFI	CCNGG	3 cut(s)	85, 175, 409
SexAI	ACCWGGT	1 cut(s)	173
SfaNI	GCATC	3 cut(s)	86, 112, 447
SinI	GGWCC	1 cut(s)	297
Sse9I	AATT	3 cut(s)	306, 334, 613
SsiI	CCGC	4 cut(s)	194, 207, 483, 720
SspMI	CTAG	2 cut(s)	186, 276
StyD4I	CCNGG	3 cut(s)	83, 173, 407
TaaI	ACNGT	2 cut(s)	702, 762
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	3 cut(s)	53, 390, 608
TasI	AATT	3 cut(s)	306, 334, 613
TatI	WGTACW	1 cut(s)	757
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	4 cut(s)	200, 216, 576, 705
Tru9I	TTAA	4 cut(s)	200, 216, 576, 705
TscAI	CASTG	3 cut(s)	70, 124, 595
TseFI	GTSAC	3 cut(s)	61, 301, 673
Tsp45I	GTSAC	3 cut(s)	61, 301, 673
TspDTI	ATGAA	1 cut(s)	756
TspGWI	ACGGA	2 cut(s)	237, 289
TspRI	CASTG	3 cut(s)	70, 124, 595
VpaK11BI	GGWCC	1 cut(s)	297
XspI	CTAG	2 cut(s)	186, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.