Prupe.1G360700_v2.0.a1

expansin-A11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014412
Physical Location & Seq
Forward (+)
33252342 .. 33253970
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G360700.1

Sequence Viewer

Length: 774 bp
ATGGCCAAACTCGTTTTTGCATTAGCAATCTTGCTTGGATCATTATGCAGTCTCTCTACATATGTTTCTGCATTTACTGCATCTGGATGGACTAAAGGTCATGCCACATTTTATGGAGGAAGTGATGCCTCAGGAACTATGGGGGGAGCTTGTGGGTACGGTAACCTGTATTCGACAGGGTATGGGACTAGGACCGCTGCTTTAAGTACCGCCTTGTTCAACGACGGGGCTTCATGTGGGCAATGCTATAAGATCATGTGCGATTATAAAACAGATCCTAGATGGTGCAATAAAGGAGTGTCCGTGACAATCACTGCAACAAACTTTTGTCCTCCTAATTATGATCTTCCAAGCAACAATGGAGGATGGTGCAACCCACCCCTTCAGCACTTTGACATGGCTCAGCCTGCTTGGGAAAAGATTGGGATTTACAGAGGTGGCATCGTCCCCGTCTTGTTCCAAAGGGTTCCATGCAAGAAGCATGGGGGTGTGAGGTTCACAATAAATGGGAGGGACTACTTCGAGCTTGTTCTGATCAGCAATGTAGGAGGAGCTGGATCTATTAAGTCTGCATACATCAAAGGTTCAAAAACTGGTTGGATGGCAATGTCAAGGAATTGGGGAGCAAACTGGCAGTCCAATGCCTACCTCAATGGCCAATCTCTGTCCTTCAGAATCACCACCACGGATGGAGAAACTCAACTCTTTCAGAACATTGTGCCTTCCAGTTGGAGCTTCAGCCAAACTTTCTCCAGCAGAGTGCAATTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

258

Amino Acids

27.78

Weight (kDa)

9.14

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20190 AT1G20190
fragaria_vesca FvH4_2g38040
malus_domestica MD03G1275400.v1.1 MD08G1009000.v1.1 MD15G1007700.v1.1
prunus_persica Prupe.1G360700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0303551
rosa_laevigata RLG00000011074
rosa_multiflora Rmu_ssc0000114.1_g000030
rosa_roxburghii Rroxscaffold_7G00164640
rosa_rugosa Rorug06G0322200
rosa_samantha Rh6AG436700 Rh6BG466700 Rh6CG448600 Rh6DG435400
rosa_wichuraiana Rw6G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AciI CCGC 2 cut(s) 195, 210
AclWI GGATC 3 cut(s) 46, 269, 565
AcoI YGGCCR 2 cut(s) 3, 655
AcuI CTGAAG 3 cut(s) 368, 655, 721
AfaI GTAC 2 cut(s) 158, 208
AgsI TTSAA 2 cut(s) 220, 588
AhdI GACNNNNNGTC 1 cut(s) 96
AluBI AGCT 4 cut(s) 149, 526, 554, 735
AluI AGCT 4 cut(s) 149, 526, 554, 735
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 3 cut(s) 46, 269, 565
AoxI GGCC 2 cut(s) 3, 655
ApeKI GCWGC 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 670
AvaII GGWCC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 130
BalI TGGCCA 2 cut(s) 5, 657
BbvI GCAGC 1 cut(s) 184
BccI CCATC 5 cut(s) 81, 276, 360, 595, 683
BclI TGATCA 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 189, 279
BisI GCNGC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 192
BmeRI GACNNNNNGTC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 468
BmsI GCATC 3 cut(s) 89, 115, 450
BpmI CTGGAG 1 cut(s) 736
Bpu1102I GCTNAGC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse1I ACTGG 3 cut(s) 598, 635, 726
Bse21I CCTNAGG 1 cut(s) 130
Bse3DI GCAATG 3 cut(s) 248, 547, 612
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 4 cut(s) 92, 371, 606, 694
BseMI GCAATG 3 cut(s) 248, 547, 612
BseMII CTCAG 2 cut(s) 144, 416
BseNI ACTGG 3 cut(s) 598, 635, 726
BseRI GAGGAG 1 cut(s) 564
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 5, 657
BslFI GGGAC 3 cut(s) 199, 431, 527
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 3 cut(s) 199, 431, 527
BsnI GGCC 2 cut(s) 5, 657
Bsp143I GATC 6 cut(s) 38, 252, 274, 343, 534, 557
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 2 cut(s) 195, 210
BspANI GGCC 2 cut(s) 5, 657
BspCNI CTCAG 2 cut(s) 143, 415
BspLI GGNNCC 1 cut(s) 468
BspPI GGATC 3 cut(s) 46, 269, 565
BsrDI GCAATG 3 cut(s) 248, 547, 612
BsrI ACTGG 3 cut(s) 598, 635, 726
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 6 cut(s) 38, 252, 274, 343, 534, 557
Bst4CI ACNGT 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 130, 402
BstDSI CCRYGG 1 cut(s) 684
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 4 cut(s) 92, 371, 606, 694
BstKTI GATC 6 cut(s) 41, 255, 277, 346, 537, 560
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 6 cut(s) 38, 252, 274, 343, 534, 557
BstMWI GCNNNNNNNGC 2 cut(s) 77, 407
BstPI GGTNACC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 274, 557
BstYI RGATCY 2 cut(s) 274, 557
Bsu36I CCTNAGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 5, 657
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 4 cut(s) 92, 371, 606, 694
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 2 cut(s) 157, 207
CviAII CATG 6 cut(s) 101, 234, 256, 397, 471, 482
CviQI GTAC 2 cut(s) 157, 207
DdeI CTNAG 2 cut(s) 130, 402
DpnI GATC 6 cut(s) 40, 254, 276, 345, 536, 559
DpnII GATC 6 cut(s) 38, 252, 274, 343, 534, 557
DriI GACNNNNNGTC 1 cut(s) 96
EaeI YGGCCR 2 cut(s) 3, 655
Eam1105I GACNNNNNGTC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 3 cut(s) 368, 655, 721
Eco81I CCTNAGG 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
FaeI CATG 6 cut(s) 104, 237, 259, 400, 474, 485
FaqI GGGAC 3 cut(s) 199, 431, 527
FatI CATG 6 cut(s) 100, 233, 255, 396, 470, 481
FauNDI CATATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 4 cut(s) 99, 378, 613, 701
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 189, 279
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 736
HaeIII GGCC 2 cut(s) 5, 657
Hin1II CATG 6 cut(s) 104, 237, 259, 400, 474, 485
HinfI GANTC 1 cut(s) 675
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 3 cut(s) 534, 674, 711
Hpy188III TCNNGA 2 cut(s) 84, 132
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 392, 679, 732
HpyCH4III ACNGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 407
HpyF3I CTNAG 2 cut(s) 130, 402
Hsp92II CATG 6 cut(s) 104, 237, 259, 400, 474, 485
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 6 cut(s) 38, 252, 274, 343, 534, 557
LmnI GCTCC 4 cut(s) 146, 551, 623, 732
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 3 cut(s) 89, 115, 450
MaeI CTAG 2 cut(s) 189, 279
MaeIII GTNAC 2 cut(s) 161, 304
MalI GATC 6 cut(s) 40, 254, 276, 345, 536, 559
MboI GATC 6 cut(s) 38, 252, 274, 343, 534, 557
MboII GAAGA 1 cut(s) 338
MflI RGATCY 2 cut(s) 274, 557
MlsI TGGCCA 2 cut(s) 5, 657
MluCI AATT 3 cut(s) 337, 616, 764
MluNI TGGCCA 2 cut(s) 5, 657
MmeI TCCRAC 2 cut(s) 578, 710
MnlI CCTC 9 cut(s) 110, 139, 342, 356, 428, 486, 504, 542, 659
Mox20I TGGCCA 2 cut(s) 5, 657
MscI TGGCCA 2 cut(s) 5, 657
MseI TTAA 2 cut(s) 203, 564
MslI CAYNNNNRTG 2 cut(s) 85, 486
Msp20I TGGCCA 2 cut(s) 5, 657
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 77, 407
NdeI CATATG 1 cut(s) 61
NdeII GATC 6 cut(s) 38, 252, 274, 343, 534, 557
NlaIII CATG 6 cut(s) 104, 237, 259, 400, 474, 485
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 675
PkrI GCNGC 1 cut(s) 199
PsiI TTATAA 1 cut(s) 267
PspEI GGTNACC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 2 cut(s) 274, 557
RsaI GTAC 2 cut(s) 158, 208
RsaNI GTAC 2 cut(s) 157, 207
RseI CAYNNNNRTG 2 cut(s) 85, 486
SaqAI TTAA 2 cut(s) 203, 564
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 6 cut(s) 38, 252, 274, 343, 534, 557
Sau96I GGNCC 1 cut(s) 192
SfaNI GCATC 3 cut(s) 89, 115, 450
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 85, 486
Sse9I AATT 3 cut(s) 337, 616, 764
SsiI CCGC 2 cut(s) 195, 210
SspMI CTAG 2 cut(s) 189, 279
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 173, 522
TasI AATT 3 cut(s) 337, 616, 764
TfiI GAWTC 1 cut(s) 675
Tru1I TTAA 2 cut(s) 203, 564
Tru9I TTAA 2 cut(s) 203, 564
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 2 cut(s) 292, 701
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 192
XspI CTAG 2 cut(s) 189, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.