MD15G1007700.v1.1

expansin-A11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014412
Physical Location & Seq
Forward (+)
416654 .. 418389
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1007700.v1.1.491

Sequence Viewer

Length: 771 bp
ATGGCGAAGCTCTTTTTTCCATTAGCAATCTTTCTTGGAGTATACAGTCTCTCGACATATGTCACTGCATTCACAGCATCTGGCTGGACTAAAGGTCATGCCACATTCTATGGAGGAAGTGATGCCTCTGGAACTATGGGGGGAGCTTGTGGATATGGCAACCTGTATTCCACCAGGTACGGGACTAGGACGGCGGCTTTAAGTACCGCCCTGTTTAACGACGGAGCTTCATGTGGACAATGCTATAAGATAATATGCGACTACACCACAGATTCTAGATGGTGCATAAAAGGAAGGTCCGTGACAATTACTGCAACAAACTTTTGTCCTCCCAATTTTGATCTTCCAAACAACAATGGAGGATGGTGCAACCCACCCCTTCAGCATTTCGACATGGCTCAGCCTGCCTGGGAAAAGATCGGAATTTACAGCGGTGGCATCATCCCCGTCCTGTTCCAAAGGGTACCATGCAAGAAGAAAGGCGGTGTGAGATTCACAATAAATGGGAGGAACTACTTTGAGCTTGTGCTGATCACCAATGTCGGAGGAGCTGGATCTATCACGTCTGCTTACATTAAAGGATCCCAAACTGGTTGGATGGCAATGTCCATGAATTGGGGAGCAAACTGGCAGTCCAACGCCTACCTCAACGGCCAATCTCTGTCGTTCAGAGTCACCACAACCGACGGCGAAACTCAACTGTTTAACGACATTGCTCCCGCCAACTGGGGATTTGGCCAAACGTTCACCAGCAACGTACAGTTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

257

Amino Acids

27.73

Weight (kDa)

8.89

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 35 - 157 8e-07 EXPB1-like domain 1
DPBB_1 PF03330 64 - 151 2.1e-21 Lytic transglycolase
Expansin_C PF01357 163 - 240 1.9e-27 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20190 AT1G20190
fragaria_vesca FvH4_2g38040
malus_domestica MD03G1275400.v1.1 MD08G1009000.v1.1 MD15G1007700.v1.1
prunus_persica Prupe.1G360700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0303551
rosa_laevigata RLG00000011074
rosa_multiflora Rmu_ssc0000114.1_g000030
rosa_roxburghii Rroxscaffold_7G00164640
rosa_rugosa Rorug06G0322200
rosa_samantha Rh6AG436700 Rh6BG466700 Rh6CG448600 Rh6DG435400
rosa_wichuraiana Rw6G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 463
AccB7I CCANNNNNTGG 1 cut(s) 615
AccI GTMKAC 1 cut(s) 42
AciI CCGC 5 cut(s) 194, 207, 432, 483, 720
AclI AACGTT 1 cut(s) 743
AclWI GGATC 3 cut(s) 562, 576, 589
AcoI YGGCCR 2 cut(s) 652, 736
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 4 cut(s) 179, 205, 465, 759
AfiI CCNNNNNNNGG 3 cut(s) 180, 615, 726
AhdI GACNNNNNGTC 1 cut(s) 93
AjiI CACGTC 1 cut(s) 564
AjnI CCWGG 2 cut(s) 173, 407
AluBI AGCT 5 cut(s) 10, 146, 227, 523, 551
AluI AGCT 5 cut(s) 10, 146, 227, 523, 551
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 562, 576, 589
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 2 cut(s) 652, 736
ApoI RAATTY 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
Asp718I GGTACC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 3 cut(s) 526, 667, 739
AvaII GGWCC 1 cut(s) 297
BalI TGGCCA 1 cut(s) 738
BamHI GGATCC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 463
BccI CCATC 3 cut(s) 273, 357, 592
BceAI ACGGC 3 cut(s) 207, 667, 703
BciT130I CCWGG 2 cut(s) 175, 409
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 186, 276
BisI GCNGC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 175, 409
Bme18I GGWCC 1 cut(s) 297
BmeRI GACNNNNNGTC 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 465, 583
BmrFI CCNGG 2 cut(s) 175, 409
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 3 cut(s) 86, 112, 447
BmuI ACTGGG 1 cut(s) 736
BoxI GACNNNNGTC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 615, 726
Bse1I ACTGG 3 cut(s) 595, 632, 731
Bse3DI GCAATG 2 cut(s) 609, 711
BseBI CCWGG 2 cut(s) 175, 409
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 3 cut(s) 368, 441, 603
BseLI CCNNNNNNNGG 3 cut(s) 180, 615, 726
BseMI GCAATG 2 cut(s) 609, 711
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 3 cut(s) 595, 632, 731
BseRI GAGGAG 1 cut(s) 561
BshFI GGCC 2 cut(s) 654, 738
BshNI GGYRCC 1 cut(s) 463
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 180, 615, 726
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 654, 738
Bsp143I GATC 5 cut(s) 340, 417, 531, 554, 581
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 5 cut(s) 194, 207, 432, 483, 720
BspANI GGCC 2 cut(s) 654, 738
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 465, 583
BspPI GGATC 3 cut(s) 562, 576, 589
BspT107I GGYRCC 1 cut(s) 463
BsrDI GCAATG 2 cut(s) 609, 711
BsrI ACTGG 3 cut(s) 595, 632, 731
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 5 cut(s) 340, 417, 531, 554, 581
BssNAI GTATAC 1 cut(s) 43
Bst1107I GTATAC 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 175, 409
Bst4CI ACNGT 3 cut(s) 47, 702, 762
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 368, 441, 603
BstKTI GATC 5 cut(s) 343, 420, 534, 557, 584
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 5 cut(s) 340, 417, 531, 554, 581
BstMWI GCNNNNNNNGC 2 cut(s) 74, 404
BstNI CCWGG 2 cut(s) 175, 409
BstPAI GACNNNNGTC 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 173, 407
BstX2I RGATCY 2 cut(s) 554, 581
BstYI RGATCY 2 cut(s) 554, 581
BstZ17I GTATAC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 654, 738
BtrI CACGTC 1 cut(s) 564
BtsCI GGATG 3 cut(s) 368, 441, 603
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 297
CsiI ACCWGGT 1 cut(s) 173
Csp6I GTAC 4 cut(s) 178, 204, 464, 758
CviAII CATG 5 cut(s) 98, 231, 394, 468, 610
CviQI GTAC 4 cut(s) 178, 204, 464, 758
DdeI CTNAG 1 cut(s) 399
DpnI GATC 5 cut(s) 342, 419, 533, 556, 583
DpnII GATC 5 cut(s) 340, 417, 531, 554, 581
DriI GACNNNNNGTC 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 652, 736
Eam1105I GACNNNNNGTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 173, 407
FaeI CATG 5 cut(s) 101, 234, 397, 471, 613
FaqI GGGAC 1 cut(s) 196
FatI CATG 5 cut(s) 97, 230, 393, 467, 609
FauI CCCGC 1 cut(s) 727
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 3 cut(s) 375, 428, 610
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 186, 276
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 2 cut(s) 654, 738
Hin1II CATG 5 cut(s) 101, 234, 397, 471, 613
HinfI GANTC 3 cut(s) 272, 492, 672
HphI GGTGA 3 cut(s) 526, 667, 739
Hpy166II GTNNAC 3 cut(s) 43, 236, 747
Hpy188I TCNGA 3 cut(s) 422, 545, 671
Hpy188III TCNNGA 3 cut(s) 52, 129, 276
Hpy8I GTNNAC 3 cut(s) 43, 236, 747
Hpy99I CGWCG 2 cut(s) 224, 689
HpyAV CCTTC 2 cut(s) 288, 389
HpyCH4III ACNGT 3 cut(s) 47, 702, 762
HpyCH4IV ACGT 3 cut(s) 563, 743, 756
HpyCH4V TGCA 5 cut(s) 68, 285, 314, 369, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 404
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 3 cut(s) 563, 743, 756
Hsp92II CATG 5 cut(s) 101, 234, 397, 471, 613
KpnI GGTACC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 5 cut(s) 340, 417, 531, 554, 581
LmnI GCTCC 5 cut(s) 143, 224, 548, 620, 721
LweI GCATC 3 cut(s) 86, 112, 447
MabI ACCWGGT 1 cut(s) 173
MaeI CTAG 2 cut(s) 186, 276
MaeII ACGT 3 cut(s) 563, 743, 756
MaeIII GTNAC 3 cut(s) 61, 301, 673
MalI GATC 5 cut(s) 342, 419, 533, 556, 583
MboI GATC 5 cut(s) 340, 417, 531, 554, 581
MboII GAAGA 2 cut(s) 335, 487
MflI RGATCY 2 cut(s) 554, 581
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 4 cut(s) 306, 334, 423, 613
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 1 cut(s) 681
MmeI TCCRAC 3 cut(s) 523, 575, 660
MnlI CCTC 7 cut(s) 107, 136, 339, 353, 501, 539, 656
Mox20I TGGCCA 1 cut(s) 738
MscI TGGCCA 1 cut(s) 738
MseI TTAA 4 cut(s) 200, 216, 576, 705
Msp20I TGGCCA 1 cut(s) 738
MspA1I CMGCKG 1 cut(s) 432
MspR9I CCNGG 2 cut(s) 175, 409
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 2 cut(s) 175, 409
MwoI GCNNNNNNNGC 2 cut(s) 74, 404
NdeI CATATG 1 cut(s) 58
NdeII GATC 5 cut(s) 340, 417, 531, 554, 581
NlaIII CATG 5 cut(s) 101, 234, 397, 471, 613
NlaIV GGNNCC 2 cut(s) 465, 583
NmuCI GTSAC 3 cut(s) 61, 301, 673
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 272, 492
PflMI CCANNNNNTGG 1 cut(s) 615
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PshAI GACNNNNGTC 1 cut(s) 59
Psp1406I AACGTT 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 173, 407
PspGI CCWGG 2 cut(s) 173, 407
PspN4I GGNNCC 2 cut(s) 465, 583
PspPI GGNCC 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 2 cut(s) 554, 581
RsaI GTAC 4 cut(s) 179, 205, 465, 759
RsaNI GTAC 4 cut(s) 178, 204, 464, 758
SaqAI TTAA 4 cut(s) 200, 216, 576, 705
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 5 cut(s) 340, 417, 531, 554, 581
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 681
ScrFI CCNGG 2 cut(s) 175, 409
SexAI ACCWGGT 1 cut(s) 173
SfaNI GCATC 3 cut(s) 86, 112, 447
SinI GGWCC 1 cut(s) 297
Sse9I AATT 4 cut(s) 306, 334, 423, 613
SsiI CCGC 5 cut(s) 194, 207, 432, 483, 720
SspMI CTAG 2 cut(s) 186, 276
StyD4I CCNGG 2 cut(s) 173, 407
TaaI ACNGT 3 cut(s) 47, 702, 762
TaiI ACGT 3 cut(s) 566, 746, 759
TaqI TCGA 2 cut(s) 53, 390
TasI AATT 4 cut(s) 306, 334, 423, 613
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 272, 492
Tru1I TTAA 4 cut(s) 200, 216, 576, 705
Tru9I TTAA 4 cut(s) 200, 216, 576, 705
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 3 cut(s) 61, 301, 673
Tsp45I GTSAC 3 cut(s) 61, 301, 673
TspDTI ATGAA 2 cut(s) 219, 626
TspGWI ACGGA 2 cut(s) 237, 289
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 423
XbaI TCTAGA 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 2 cut(s) 186, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.