Rmu_ssc0000114.1_g000030

expansin-A11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000114.1
OG0014412
Physical Location & Seq
Forward (+)
169499 .. 170421
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000114.1_g000030.1.cds

Sequence Viewer

Length: 762 bp
atggccaaactcgtttctgcattggcaatcttgcttagtgtttctacatatgtttatggattcacggcatctgggttcaccagaggtcacgccacattttatggaggaagtgatgcctccggaactatgggtggagcttgtggatatggcgatctgtattcggcagggtatgggactaggactgcggctctgagtactgctttgttcaacgatggaggttcatgtgggcaatgctacaggatcatctgtgattatgcaacagattccaaatggtgcattaagggagtatccgtgactgtgaccgcaaccaacttttgtcctcctaattatgatcttcccagcaacaatggaggctggtgcaacccgccccttcagcatttcgacatggctcagcccgcttgggagaagattgcaatctacagaggtggcattgtccccgtcttgttccaaagggttccatgtaagaagcatggaggcgtcaggttcgccataaatgggagggactattttgagcttgttctgattagcaatgtgggaggagcaggatctattaaatctgcctacatcaaagggtcgaacaccggttggatggcaatgtcaagaaattggggagctaattggcagtccaatgcctacctcaatggccaatctctgtccttcaaagtcaccaccaccgatggagaaactaaactctttacgaacattgtgccttcaagttggaattttggccaaaccttctccagttcagtacagttttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.08

Weight (kDa)

8.87

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20190 AT1G20190
fragaria_vesca FvH4_2g38040
malus_domestica MD03G1275400.v1.1 MD08G1009000.v1.1 MD15G1007700.v1.1
prunus_persica Prupe.1G360700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0303551
rosa_laevigata RLG00000011074
rosa_multiflora Rmu_ssc0000114.1_g000030
rosa_roxburghii Rroxscaffold_7G00164640
rosa_rugosa Rorug06G0322200
rosa_samantha Rh6AG436700 Rh6BG466700 Rh6CG448600 Rh6DG435400
rosa_wichuraiana Rw6G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 119
AciI CCGC 4 cut(s) 185, 303, 365, 396
AclWI GGATC 2 cut(s) 248, 553
AcoI YGGCCR 3 cut(s) 3, 643, 727
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 2 cut(s) 196, 750
AfiI CCNNNNNNNGG 1 cut(s) 495
AgeI ACCGGT 1 cut(s) 581
AgsI TTSAA 3 cut(s) 208, 661, 714
AluBI AGCT 3 cut(s) 137, 514, 614
AluI AGCT 3 cut(s) 137, 514, 614
AlwI GGATC 2 cut(s) 248, 553
Aor13HI TCCGGA 1 cut(s) 119
AoxI GGCC 3 cut(s) 3, 643, 727
ApoI RAATTY 1 cut(s) 721
AsiGI ACCGGT 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 70, 658
BalI TGGCCA 3 cut(s) 5, 645, 729
BccI CCATC 3 cut(s) 206, 583, 671
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BciVI GTATCC 1 cut(s) 298
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 2 cut(s) 235, 418
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 1 cut(s) 186
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 187
BmcAI AGTACT 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 456
BmsI GCATC 2 cut(s) 77, 103
BpmI CTGGAG 1 cut(s) 724
Bpu1102I GCTNAGC 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 477
BsaWI WCCGGW 2 cut(s) 119, 581
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 1 cut(s) 581
Bse1I ACTGG 1 cut(s) 741
Bse3DI GCAATG 3 cut(s) 236, 535, 600
Bse8I GATNNNNATC 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 119
BseGI GGATG 1 cut(s) 594
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMI GCAATG 3 cut(s) 236, 535, 600
BseMII CTCAG 2 cut(s) 182, 404
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 1 cut(s) 552
BseYI CCCAGC 1 cut(s) 338
BshFI GGCC 3 cut(s) 5, 645, 729
BshTI ACCGGT 1 cut(s) 581
BsiSI CCGG 2 cut(s) 120, 582
BslFI GGGAC 3 cut(s) 187, 419, 515
BslI CCNNNNNNNGG 1 cut(s) 495
BsmFI GGGAC 3 cut(s) 187, 419, 515
BsnI GGCC 3 cut(s) 5, 645, 729
Bsp13I TCCGGA 1 cut(s) 119
Bsp143I GATC 4 cut(s) 151, 240, 331, 545
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 4 cut(s) 185, 303, 365, 396
BspANI GGCC 3 cut(s) 5, 645, 729
BspCNI CTCAG 2 cut(s) 183, 403
BspEI TCCGGA 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 2 cut(s) 248, 553
BsrDI GCAATG 3 cut(s) 236, 535, 600
BsrFI RCCGGY 1 cut(s) 581
BsrI ACTGG 1 cut(s) 741
BssAI RCCGGY 1 cut(s) 581
BssMI GATC 4 cut(s) 151, 240, 331, 545
BssNI GRCGYC 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 298, 753
BstACI GRCGYC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 35, 191, 390
BstF5I GGATG 1 cut(s) 594
BstKTI GATC 4 cut(s) 154, 243, 334, 548
BstMBI GATC 4 cut(s) 151, 240, 331, 545
BstMWI GCNNNNNNNGC 2 cut(s) 373, 395
BstSFI CTRYAG 2 cut(s) 235, 418
BstX2I RGATCY 1 cut(s) 545
BstYI RGATCY 1 cut(s) 545
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 3 cut(s) 5, 645, 729
BtsCI GGATG 1 cut(s) 594
Cac8I GCNNGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 581
CseI GACGC 1 cut(s) 466
Csp6I GTAC 2 cut(s) 195, 749
CspAI ACCGGT 1 cut(s) 581
CviAII CATG 4 cut(s) 222, 385, 459, 470
CviQI GTAC 2 cut(s) 195, 749
DdeI CTNAG 3 cut(s) 35, 191, 390
DpnI GATC 4 cut(s) 153, 242, 333, 547
DpnII GATC 4 cut(s) 151, 240, 331, 545
EaeI YGGCCR 3 cut(s) 3, 643, 727
Eco57I CTGAAG 1 cut(s) 356
FaeI CATG 4 cut(s) 225, 388, 462, 473
FaqI GGGAC 3 cut(s) 187, 419, 515
FatI CATG 4 cut(s) 221, 384, 458, 469
FauI CCCGC 2 cut(s) 372, 403
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 601
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 724
HaeIII GGCC 3 cut(s) 5, 645, 729
HapII CCGG 2 cut(s) 120, 582
HgaI GACGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 225, 388, 462, 473
HinfI GANTC 2 cut(s) 60, 263
HpaII CCGG 2 cut(s) 120, 582
HphI GGTGA 2 cut(s) 70, 658
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 2 cut(s) 192, 522
Hpy188III TCNNGA 2 cut(s) 120, 600
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 4 cut(s) 380, 667, 720, 745
HpyCH4III ACNGT 2 cut(s) 298, 753
HpyCH4V TGCA 5 cut(s) 20, 257, 276, 360, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 395
HpyF3I CTNAG 3 cut(s) 35, 191, 390
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 225, 388, 462, 473
Kpn2I TCCGGA 1 cut(s) 119
Kzo9I GATC 4 cut(s) 151, 240, 331, 545
LmnI GCTCC 3 cut(s) 134, 539, 611
LweI GCATC 2 cut(s) 77, 103
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 4 cut(s) 86, 292, 298, 664
MalI GATC 4 cut(s) 153, 242, 333, 547
MboI GATC 4 cut(s) 151, 240, 331, 545
MboII GAAGA 2 cut(s) 326, 418
MflI RGATCY 1 cut(s) 545
MlsI TGGCCA 3 cut(s) 5, 645, 729
MluCI AATT 4 cut(s) 325, 604, 616, 721
MluNI TGGCCA 3 cut(s) 5, 645, 729
MmeI TCCRAC 2 cut(s) 566, 698
Mox20I TGGCCA 3 cut(s) 5, 645, 729
MroI TCCGGA 1 cut(s) 119
MscI TGGCCA 3 cut(s) 5, 645, 729
MseI TTAA 3 cut(s) 279, 552, 760
Msp20I TGGCCA 3 cut(s) 5, 645, 729
MspI CCGG 2 cut(s) 120, 582
MwoI GCNNNNNNNGC 2 cut(s) 373, 395
NdeI CATATG 1 cut(s) 49
NdeII GATC 4 cut(s) 151, 240, 331, 545
NlaIII CATG 4 cut(s) 225, 388, 462, 473
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 4 cut(s) 86, 292, 298, 664
PfeI GAWTC 2 cut(s) 60, 263
PinAI ACCGGT 1 cut(s) 581
PkrI GCNGC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 456
PsuI RGATCY 1 cut(s) 545
RsaI GTAC 2 cut(s) 196, 750
RsaNI GTAC 2 cut(s) 195, 749
SaqAI TTAA 3 cut(s) 279, 552, 760
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 151, 240, 331, 545
ScaI AGTACT 1 cut(s) 196
SetI ASST 9 cut(s) 88, 139, 220, 427, 485, 516, 616, 639, 737
SfaNI GCATC 2 cut(s) 77, 103
SfcI CTRYAG 2 cut(s) 235, 418
Sse9I AATT 4 cut(s) 325, 604, 616, 721
SsiI CCGC 4 cut(s) 185, 303, 365, 396
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 298, 753
TaqI TCGA 2 cut(s) 381, 575
TasI AATT 4 cut(s) 325, 604, 616, 721
TatI WGTACW 2 cut(s) 194, 748
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 60, 263
Tru1I TTAA 3 cut(s) 279, 552, 760
Tru9I TTAA 3 cut(s) 279, 552, 760
TseFI GTSAC 4 cut(s) 86, 292, 298, 664
Tsp45I GTSAC 4 cut(s) 86, 292, 298, 664
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 280
XapI RAATTY 1 cut(s) 721
XspI CTAG 1 cut(s) 177
ZrmI AGTACT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.