FvH4_2g38340

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017105
Physical Location & Seq
Reverse (-)
27753950 .. 27754414
465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38340.t1

Sequence Viewer

Length: 465 bp
ATGATGTCCATTTCCTCTTCATCGTTCACCGCCTCTTCATCTTTCTTTTCCGGCCAAACACTCCTCACCAACGCTCCGACCTCGCCTTCGTCCGTCAAGTTCCGTCCGGCGACCATCTCCGCTTCATTTGCATCAACGGTCGACAGGCCCCGCATCCACATTGGTGGATCAAACCCCTCCCTCTACGACGTCCTCGGCATTCCCACGGGCGCCACGTGTCAGGAAATCAAGACTGCTTACCGCAGATTGGCCAGAACAGTCCACCCTGACGTCACCGCAGCTAACGGTCAATCCTCCTCCGACGAGTTCATGAAGGTCCACGAGGCCTACGCCACTCTCTCCGACCCCCAGAAGCGCGCCGACTACGACCACCGGATGCTTTTCCGGCGGCCGGTGCCGATGGGCTCTTCGTTCTCAATGTCGTCGTCGTCGGGAAGGAGATGGGAAACCGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

155

Amino Acids

16.84

Weight (kDa)

9.38

Isoelectric Point (pI)

67.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 61 - 123 2e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38340
prunus_persica Prupe.1G364400_v2.0.a1
pyrus_communis pycom08g01060 pycom15g01000
rosa_chinensis RchiOBHm_Chr6g0303011
rosa_laevigata RLG00000011118
rosa_multiflora Rmu_ssc0000460.1_g000030
rosa_roxburghii Rroxscaffold_7G00165110
rosa_rugosa Rorug06G0318400
rosa_samantha Rh6AG432200 Rh6BG470300 Rh6DG431400
rosa_wichuraiana Rw6G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 192, 273
AccB1I GGYRCC 2 cut(s) 209, 394
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 357
AciI CCGC 6 cut(s) 30, 120, 151, 241, 276, 388
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 3 cut(s) 52, 249, 389
AcvI CACGTG 1 cut(s) 216
AcyI GRCGYC 3 cut(s) 189, 210, 270
AfiI CCNNNNNNNGG 2 cut(s) 247, 391
AflIII ACRYGT 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
AlwI GGATC 1 cut(s) 175
AoxI GGCC 5 cut(s) 52, 146, 249, 324, 389
ApeKI GCWGC 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AspLEI GCGC 3 cut(s) 212, 357, 359
AspS9I GGNCC 2 cut(s) 147, 316
AsuHPI GGTGA 3 cut(s) 19, 58, 265
AvaII GGWCC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 2 cut(s) 209, 394
BanII GRGCYC 1 cut(s) 407
BauI CACGAG 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 216
BbvI GCAGC 1 cut(s) 290
BccI CCATC 3 cut(s) 122, 394, 435
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 2 cut(s) 279, 389
BlsI GCNGC 2 cut(s) 280, 390
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 147, 316
BmiI GGNNCC 3 cut(s) 149, 211, 396
BmsI GCATC 3 cut(s) 140, 162, 366
BsaAI YACGTR 1 cut(s) 216
BsaHI GRCGYC 3 cut(s) 189, 210, 270
BsaJI CCNNGG 2 cut(s) 193, 204
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 391
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 454
BseDI CCNNGG 2 cut(s) 193, 204
BseGI GGATG 2 cut(s) 153, 381
BseLI CCNNNNNNNGG 2 cut(s) 247, 391
BseNI ACTGG 1 cut(s) 454
BsePI GCGCGC 1 cut(s) 355
BseRI GAGGAG 2 cut(s) 53, 286
BseX3I CGGCCG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 357
Bsh1285I CGRYCG 2 cut(s) 141, 392
BshFI GGCC 5 cut(s) 54, 148, 251, 326, 391
BshNI GGYRCC 2 cut(s) 209, 394
BsiEI CGRYCG 2 cut(s) 141, 392
BsiSI CCGG 5 cut(s) 51, 107, 373, 385, 392
BslI CCNNNNNNNGG 2 cut(s) 247, 391
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 5 cut(s) 54, 148, 251, 326, 391
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 1 cut(s) 167
BspACI CCGC 6 cut(s) 30, 120, 151, 241, 276, 388
BspANI GGCC 5 cut(s) 54, 148, 251, 326, 391
BspFNI CGCG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 149, 211, 396
BspPI GGATC 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 412
BspT107I GGYRCC 2 cut(s) 209, 394
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 193, 204
BssHII GCGCGC 1 cut(s) 355
BssMI GATC 1 cut(s) 167
BssNI GRCGYC 3 cut(s) 189, 210, 270
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 139, 259, 287
Bst6I CTCTTC 3 cut(s) 22, 40, 412
BstACI GRCGYC 3 cut(s) 189, 210, 270
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 153, 381
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 212, 357, 359
BstKTI GATC 1 cut(s) 170
BstMBI GATC 1 cut(s) 167
BstMCI CGRYCG 2 cut(s) 141, 392
BstMWI GCNNNNNNNGC 3 cut(s) 128, 385, 394
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 164
BstZI CGGCCG 1 cut(s) 389
BsuRI GGCC 5 cut(s) 54, 148, 251, 326, 391
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 153, 381
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 309
CfoI GCGC 3 cut(s) 212, 357, 359
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 147, 316
CviAII CATG 1 cut(s) 310
CviJI RGCY 7 cut(s) 54, 148, 251, 281, 326, 391, 405
CviKI_1 RGCY 7 cut(s) 54, 148, 251, 281, 326, 391, 405
DinI GGCGCC 1 cut(s) 211
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
EaeI YGGCCR 3 cut(s) 52, 249, 389
EagI CGGCCG 1 cut(s) 389
Eam1104I CTCTTC 3 cut(s) 22, 40, 412
EarI CTCTTC 3 cut(s) 22, 40, 412
EclXI CGGCCG 1 cut(s) 389
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 316
Eco52I CGGCCG 1 cut(s) 389
Eco72I CACGTG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 407
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
FaeI CATG 1 cut(s) 313
FaiI YATR 1 cut(s) 311
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 279, 389
FokI GGATG 2 cut(s) 140, 388
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 279, 389
GlaI GCGC 3 cut(s) 211, 356, 358
GluI GCNGC 2 cut(s) 279, 389
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 5 cut(s) 54, 148, 251, 326, 391
HapII CCGG 5 cut(s) 51, 107, 373, 385, 392
HhaI GCGC 3 cut(s) 212, 357, 359
Hin1I GRCGYC 3 cut(s) 189, 210, 270
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 3 cut(s) 210, 355, 357
HinP1I GCGC 3 cut(s) 210, 355, 357
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HpaII CCGG 5 cut(s) 51, 107, 373, 385, 392
HphI GGTGA 3 cut(s) 19, 58, 265
Hpy166II GTNNAC 4 cut(s) 27, 142, 262, 319
Hpy188I TCNGA 3 cut(s) 78, 301, 343
Hpy188III TCNNGA 4 cut(s) 221, 229, 310, 432
Hpy8I GTNNAC 4 cut(s) 27, 142, 262, 319
Hpy99I CGWCG 5 cut(s) 191, 305, 427, 430, 433
HpyAV CCTTC 3 cut(s) 96, 307, 429
HpyCH4III ACNGT 3 cut(s) 139, 259, 287
HpyCH4IV ACGT 3 cut(s) 189, 215, 270
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 385, 394
HpySE526I ACGT 3 cut(s) 189, 215, 270
Hsp92I GRCGYC 3 cut(s) 189, 210, 270
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 3 cut(s) 210, 355, 357
KasI GGCGCC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 167
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 3 cut(s) 140, 162, 366
MaeII ACGT 3 cut(s) 189, 215, 270
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 3 cut(s) 9, 27, 399
MhlI GDGCHC 1 cut(s) 407
MlsI TGGCCA 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 210
MmeI TCCRAC 3 cut(s) 101, 324, 366
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 5 cut(s) 51, 107, 373, 385, 392
Mva1269I GAATGC 1 cut(s) 198
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 128, 385, 394
NarI GGCGCC 1 cut(s) 210
NdeII GATC 1 cut(s) 167
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 3 cut(s) 149, 211, 396
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 162
PagI TCATGA 1 cut(s) 309
PauI GCGCGC 1 cut(s) 355
PceI AGGCCT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PctI GAATGC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 280, 390
PluTI GGCGCC 1 cut(s) 213
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 216
PspCI CACGTG 1 cut(s) 216
PspN4I GGNNCC 3 cut(s) 149, 211, 396
PspPI GGNCC 2 cut(s) 147, 316
PteI GCGCGC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 162
SalI GTCGAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 412
SatI GCNGC 2 cut(s) 279, 389
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 2 cut(s) 147, 316
SduI GDGCHC 1 cut(s) 407
SetI ASST 6 cut(s) 83, 192, 218, 273, 283, 318
SfaNI GCATC 3 cut(s) 140, 162, 366
SfoI GGCGCC 1 cut(s) 211
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 162
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 6 cut(s) 30, 120, 151, 241, 276, 388
SspDI GGCGCC 1 cut(s) 209
StuI AGGCCT 1 cut(s) 326
TaaI ACNGT 3 cut(s) 139, 259, 287
TaiI ACGT 3 cut(s) 192, 218, 273
TaqI TCGA 1 cut(s) 141
TauI GCSGC 1 cut(s) 391
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 5 cut(s) 9, 27, 114, 298, 326
TspGWI ACGGA 2 cut(s) 82, 92
TspRI CASTG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 141
ZraI GACGTC 2 cut(s) 190, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.