Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000460.1

Orthogroup ID

OG0017105

Physical Location & Seq

Genomic Coordinates Forward (+)

129933 .. 130391

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000460.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtccatttcttcttcgtcattcaccgcctcctcatctctcttttccggccggaccctcgtcattgacgctccgaactcgccgtcgtccatcaagtaccgtccgatgagcatctcggcctcatgcgcatcaacggtcgacatgccccgcatccacattgggacaaatccgtccctctatgatgtcctcggcattcacacgggcgccacgtgtcaggaaatcaagaccgcttaccgcagattggccagagtcgtgcaccctgacgccaccgcagctaacggtcaaagttcctccgacgagttcatgaaggtccacgaggcttatgccactctctccgacgcccaaaagcgcgccgactacgaccgcaggatgcttatccggcggccggtgccgatgagctcttccttctcaatgtcatcgtcgacgggaaggagatgggaaaccgatcagtgctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

152

Amino Acids

16.69

Weight (kDa)

9.18

Isoelectric Point (pI)

76.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38340
prunus_persica	Prupe.1G364400_v2.0.a1
pyrus_communis	pycom08g01060 pycom15g01000
rosa_chinensis	RchiOBHm_Chr6g0303011
rosa_laevigata	RLG00000011118
rosa_multiflora	Rmu_ssc0000460.1_g000030
rosa_roxburghii	Rroxscaffold_7G00165110
rosa_rugosa	Rorug06G0318400
rosa_samantha	Rh6AG432200 Rh6BG470300 Rh6DG431400
rosa_wichuraiana	Rw6G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	169
Acc16I	TGCGCA	1 cut(s)	127
AccB1I	GGYRCC	2 cut(s)	203, 388
AccI	GTMKAC	2 cut(s)	138, 422
AccII	CGCG	1 cut(s)	351
AciI	CCGC	7 cut(s)	27, 148, 228, 235, 270, 364, 382
AcoI	YGGCCR	3 cut(s)	49, 243, 383
AcvI	CACGTG	1 cut(s)	210
AcyI	GRCGYC	3 cut(s)	204, 264, 339
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	241, 385
AflIII	ACRYGT	1 cut(s)	209
AluBI	AGCT	2 cut(s)	275, 399
AluI	AGCT	2 cut(s)	275, 399
Alw21I	GWGCWC	2 cut(s)	258, 401
Alw44I	GTGCAC	1 cut(s)	254
AoxI	GGCC	4 cut(s)	49, 117, 243, 383
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspLEI	GCGC	4 cut(s)	128, 206, 351, 353
AspS9I	GGNCC	2 cut(s)	54, 310
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	54, 310
BaeGI	GKGCMC	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	2 cut(s)	203, 388
BanII	GRGCYC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	258, 401
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	98, 429
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	2 cut(s)	273, 383
BlsI	GCNGC	2 cut(s)	274, 384
Bme18I	GGWCC	2 cut(s)	54, 310
BmgT120I	GGNCC	2 cut(s)	54, 310
BmiI	GGNNCC	3 cut(s)	56, 205, 390
BmsI	GCATC	4 cut(s)	120, 137, 159, 360
BoxI	GACNNNNGTC	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	110, 374
BsaHI	GRCGYC	3 cut(s)	204, 264, 339
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 385
Bse118I	RCCGGY	1 cut(s)	385
Bse8I	GATNNNNATC	2 cut(s)	110, 374
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	150, 375
BseJI	GATNNNNATC	2 cut(s)	110, 374
BseLI	CCNNNNNNNGG	2 cut(s)	241, 385
BsePI	GCGCGC	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	258
BseX3I	CGGCCG	2 cut(s)	49, 383
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	4 cut(s)	52, 138, 364, 386
BshFI	GGCC	4 cut(s)	51, 119, 245, 385
BshNI	GGYRCC	2 cut(s)	203, 388
BsiEI	CGRYCG	4 cut(s)	52, 138, 364, 386
BsiHKAI	GWGCWC	2 cut(s)	258, 401
BsiSI	CCGG	4 cut(s)	48, 52, 379, 386
BslFI	GGGAC	2 cut(s)	157, 175
BslI	CCNNNNNNNGG	2 cut(s)	241, 385
BsmFI	GGGAC	2 cut(s)	157, 175
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	4 cut(s)	51, 119, 245, 385
Bsp1286I	GDGCHC	2 cut(s)	258, 401
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	7 cut(s)	27, 148, 228, 235, 270, 364, 382
BspANI	GGCC	4 cut(s)	51, 119, 245, 385
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	56, 205, 390
BspQI	GCTCTTC	1 cut(s)	406
BspT107I	GGYRCC	2 cut(s)	203, 388
BsrFI	RCCGGY	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	187
BssHII	GCGCGC	1 cut(s)	349
BssMI	GATC	1 cut(s)	445
BssNI	GRCGYC	3 cut(s)	204, 264, 339
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	101, 136, 281
Bst6I	CTCTTC	1 cut(s)	406
BstACI	GRCGYC	3 cut(s)	204, 264, 339
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	150, 375
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	4 cut(s)	128, 206, 351, 353
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstMCI	CGRYCG	4 cut(s)	52, 138, 364, 386
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 272, 379, 388
BstNSI	RCATGY	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	284
BstZI	CGGCCG	2 cut(s)	49, 383
BsuRI	GGCC	4 cut(s)	51, 119, 245, 385
BtsCI	GGATG	2 cut(s)	150, 375
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	4 cut(s)	128, 206, 351, 353
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	54, 310
CseI	GACGC	3 cut(s)	77, 272, 347
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	123, 142, 304
CviJI	RGCY	7 cut(s)	51, 119, 245, 275, 320, 385, 399
CviKI_1	RGCY	7 cut(s)	51, 119, 245, 275, 320, 385, 399
CviQI	GTAC	1 cut(s)	97
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	3 cut(s)	49, 243, 383
EagI	CGGCCG	2 cut(s)	49, 383
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	399
EclXI	CGGCCG	2 cut(s)	49, 383
Eco24I	GRGCYC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	54, 310
Eco52I	CGGCCG	2 cut(s)	49, 383
Eco53kI	GAGCTC	1 cut(s)	399
Eco72I	CACGTG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	401
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
FaeI	CATG	3 cut(s)	126, 145, 307
FaiI	YATR	5 cut(s)	124, 143, 180, 305, 324
FaqI	GGGAC	2 cut(s)	157, 175
FatI	CATG	3 cut(s)	122, 141, 303
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	2 cut(s)	138, 422
Fnu4HI	GCNGC	2 cut(s)	273, 383
FokI	GGATG	2 cut(s)	137, 382
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	273, 383
FspAI	RTGCGCAY	1 cut(s)	127
FspI	TGCGCA	1 cut(s)	127
GlaI	GCGC	4 cut(s)	127, 205, 350, 352
GluI	GCNGC	2 cut(s)	273, 383
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	4 cut(s)	51, 119, 245, 385
HapII	CCGG	4 cut(s)	48, 52, 379, 386
HgaI	GACGC	3 cut(s)	77, 272, 347
HhaI	GCGC	4 cut(s)	128, 206, 351, 353
Hin1I	GRCGYC	3 cut(s)	204, 264, 339
Hin1II	CATG	3 cut(s)	126, 145, 307
Hin6I	GCGC	4 cut(s)	126, 204, 349, 351
HinP1I	GCGC	4 cut(s)	126, 204, 349, 351
HincII	GTYRAC	2 cut(s)	139, 423
HindII	GTYRAC	2 cut(s)	139, 423
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	4 cut(s)	48, 52, 379, 386
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	139, 256, 313, 423
Hpy188I	TCNGA	4 cut(s)	75, 105, 295, 337
Hpy188III	TCNNGA	3 cut(s)	215, 223, 304
Hpy8I	GTNNAC	4 cut(s)	139, 256, 313, 423
Hpy99I	CGWCG	5 cut(s)	88, 299, 341, 424, 427
HpyAV	CCTTC	3 cut(s)	301, 415, 423
HpyCH4III	ACNGT	3 cut(s)	101, 136, 281
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 272, 379, 388
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	3 cut(s)	204, 264, 339
Hsp92II	CATG	3 cut(s)	126, 145, 307
HspAI	GCGC	4 cut(s)	126, 204, 349, 351
KasI	GGCGCC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	445
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	61, 65, 200, 259, 273, 352, 392, 399, 439
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	4 cut(s)	120, 137, 159, 360
MaeII	ACGT	1 cut(s)	209
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	3 cut(s)	3, 6, 393
MhlI	GDGCHC	2 cut(s)	258, 401
MlsI	TGGCCA	1 cut(s)	245
MluNI	TGGCCA	1 cut(s)	245
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	2 cut(s)	318, 360
MnlI	CCTC	8 cut(s)	40, 43, 68, 130, 185, 197, 301, 310
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	4 cut(s)	48, 52, 379, 386
Mva1269I	GAATGC	1 cut(s)	192
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	125, 272, 379, 388
NarI	GGCGCC	1 cut(s)	204
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	126, 145, 307
NlaIV	GGNNCC	3 cut(s)	56, 205, 390
NmeAIII	GCCGAG	2 cut(s)	95, 168
NsbI	TGCGCA	1 cut(s)	127
NspI	RCATGY	1 cut(s)	145
PagI	TCATGA	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	274, 384
PleI	GAGTC	1 cut(s)	257
PluTI	GGCGCC	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	401
PspCI	CACGTG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	56, 205, 390
PspPI	GGNCC	2 cut(s)	54, 310
PteI	GCGCGC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	401
SalI	GTCGAC	2 cut(s)	137, 421
SapI	GCTCTTC	1 cut(s)	406
SatI	GCNGC	2 cut(s)	273, 383
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	2 cut(s)	54, 310
SchI	GAGTC	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	258, 401
SetI	ASST	4 cut(s)	212, 277, 312, 401
SfaNI	GCATC	4 cut(s)	120, 137, 159, 360
SfoI	GGCGCC	1 cut(s)	205
SgrDI	CGTCGACG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	54, 310
SsiI	CCGC	7 cut(s)	27, 148, 228, 235, 270, 364, 382
SspDI	GGCGCC	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	101, 136, 281
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	138, 422
TauI	GCSGC	1 cut(s)	385
TscAI	CASTG	1 cut(s)	455
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	292, 320
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	455
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	54, 310
XceI	RCATGY	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	138, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.