Prupe.1G364400_v2.0.a1

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017105
Physical Location & Seq
Reverse (-)
33487794 .. 33489045
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G364400.1

Sequence Viewer

Length: 468 bp
ATGACTTCCATCTCATCCTCATCCTTCACTTGCTCCTCCCCTCTTTTCTCCGCCGCAGGATTTGCCAACGACAGCCTTCGTTCTCCTCCCTCTTCTATCACATACCGTCCGCTTCGCGTCTCCGCCTCCTGCACATCCACCGTCGACAGGCCACGCACCCGTACTGGATCAAGCTCCTCACTCTACGAGGTACTCGGGATTCACACAAGCGCCACGTGTCAGGAGATCAAGTCTGCTTACCGTAAGTTAGCGAGAGTCGTACACCCGGACGTTGCCACTGACGGTCAAACATCGGCGGACGAGTTCATGAAAGTCCACGAAGCTTACTCCACTCTGTCTGATGCCCAAAAGCGCGCGGATTACGACCGCATGATGTTGATCAGTCGGCCACGCTCTTCTTATTCGTACGCAACAACAATGTCAGCGTCGGCAGCTGGCCGGAGATGGGAAACCGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

156

Amino Acids

17.0

Weight (kDa)

9.0

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38340
prunus_persica Prupe.1G364400_v2.0.a1
pyrus_communis pycom08g01060 pycom15g01000
rosa_chinensis RchiOBHm_Chr6g0303011
rosa_laevigata RLG00000011118
rosa_multiflora Rmu_ssc0000460.1_g000030
rosa_roxburghii Rroxscaffold_7G00165110
rosa_rugosa Rorug06G0318400
rosa_samantha Rh6AG432200 Rh6BG470300 Rh6DG431400
rosa_wichuraiana Rw6G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 3 cut(s) 117, 354, 356
AciI CCGC 7 cut(s) 51, 54, 110, 123, 296, 356, 367
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 2 cut(s) 386, 436
AcvI CACGTG 1 cut(s) 216
AfaI GTAC 4 cut(s) 163, 192, 261, 407
AfiI CCNNNNNNNGG 2 cut(s) 147, 445
AflIII ACRYGT 1 cut(s) 215
AluBI AGCT 3 cut(s) 174, 323, 434
AluI AGCT 3 cut(s) 174, 323, 434
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 3 cut(s) 149, 386, 436
ApeKI GCWGC 1 cut(s) 431
AspLEI GCGC 3 cut(s) 212, 354, 356
AsuC2I CCSGG 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 216
BbvI GCAGC 1 cut(s) 443
BccI CCATC 2 cut(s) 17, 438
BclI TGATCA 1 cut(s) 378
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 2 cut(s) 54, 432
BlsI GCNGC 2 cut(s) 55, 433
Bme1390I CCNGG 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 445
Bse1I ACTGG 2 cut(s) 169, 457
Bse8I GATNNNNATC 1 cut(s) 377
BseGI GGATG 3 cut(s) 14, 20, 134
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 2 cut(s) 147, 445
BseNI ACTGG 2 cut(s) 169, 457
BsePI GCGCGC 1 cut(s) 352
BseRI GAGGAG 3 cut(s) 25, 75, 166
BseXI GCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 3 cut(s) 117, 354, 356
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 3 cut(s) 151, 388, 438
BsiEI CGRYCG 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 266, 439
BsiWI CGTACG 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 147, 445
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 151, 388, 438
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 3 cut(s) 167, 225, 378
BspACI CCGC 7 cut(s) 51, 54, 110, 123, 296, 356, 367
BspANI GGCC 3 cut(s) 151, 388, 438
BspFNI CGCG 3 cut(s) 117, 354, 356
BspHI TCATGA 1 cut(s) 306
BspPI GGATC 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 400
BsrI ACTGG 2 cut(s) 169, 457
BssHII GCGCGC 1 cut(s) 352
BssMI GATC 3 cut(s) 167, 225, 378
Bst4CI ACNGT 4 cut(s) 107, 142, 242, 284
Bst6I CTCTTC 2 cut(s) 97, 400
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 354, 436
BstF5I GGATG 3 cut(s) 14, 20, 134
BstFNI CGCG 3 cut(s) 117, 354, 356
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 212, 354, 356
BstKTI GATC 3 cut(s) 170, 228, 381
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 167, 225, 378
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 62, 431
BstSCI CCNGG 1 cut(s) 264
BstUI CGCG 3 cut(s) 117, 354, 356
BstV1I GCAGC 1 cut(s) 443
BsuRI GGCC 3 cut(s) 151, 388, 438
BtsCI GGATG 3 cut(s) 14, 20, 134
BtsIMutI CAGTG 2 cut(s) 276, 464
Cac8I GCNNGC 2 cut(s) 354, 436
CciI TCATGA 1 cut(s) 306
CfoI GCGC 3 cut(s) 212, 354, 356
CseI GACGC 2 cut(s) 106, 414
Csp6I GTAC 4 cut(s) 162, 191, 260, 406
CviAII CATG 2 cut(s) 307, 370
CviJI RGCY 7 cut(s) 75, 151, 174, 323, 388, 434, 438
CviKI_1 RGCY 7 cut(s) 75, 151, 174, 323, 388, 434, 438
CviQI GTAC 4 cut(s) 162, 191, 260, 406
DpnI GATC 3 cut(s) 169, 227, 380
DpnII GATC 3 cut(s) 167, 225, 378
EaeI YGGCCR 2 cut(s) 386, 436
Eam1104I CTCTTC 2 cut(s) 97, 400
EarI CTCTTC 2 cut(s) 97, 400
EciI GGCGGA 3 cut(s) 40, 112, 311
Eco72I CACGTG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 2 cut(s) 310, 373
FaiI YATR 3 cut(s) 103, 308, 371
FatI CATG 2 cut(s) 306, 369
FbaI TGATCA 1 cut(s) 378
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 54, 432
FokI GGATG 2 cut(s) 7, 121
Fsp4HI GCNGC 2 cut(s) 54, 432
GlaI GCGC 3 cut(s) 211, 353, 355
GluI GCNGC 2 cut(s) 54, 432
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 3 cut(s) 151, 388, 438
HapII CCGG 2 cut(s) 266, 439
HgaI GACGC 2 cut(s) 106, 414
HhaI GCGC 3 cut(s) 212, 354, 356
Hin1II CATG 2 cut(s) 310, 373
Hin6I GCGC 3 cut(s) 210, 352, 354
HinP1I GCGC 3 cut(s) 210, 352, 354
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 199, 255
HpaII CCGG 2 cut(s) 266, 439
Hpy166II GTNNAC 3 cut(s) 145, 262, 316
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 196, 221, 307
Hpy8I GTNNAC 3 cut(s) 145, 262, 316
Hpy99I CGWCG 2 cut(s) 146, 430
HpyAV CCTTC 2 cut(s) 34, 86
HpyCH4III ACNGT 4 cut(s) 107, 142, 242, 284
HpyCH4IV ACGT 2 cut(s) 215, 270
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 431
HpySE526I ACGT 2 cut(s) 215, 270
Hsp92II CATG 2 cut(s) 310, 373
HspAI GCGC 3 cut(s) 210, 352, 354
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 3 cut(s) 167, 225, 378
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 38, 179
LpnPI CCDG 9 cut(s) 42, 133, 142, 150, 206, 279, 420, 448, 452
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 1 cut(s) 331
MaeII ACGT 2 cut(s) 215, 270
MalI GATC 3 cut(s) 169, 227, 380
MboI GATC 3 cut(s) 167, 225, 378
MboII GAAGA 2 cut(s) 84, 387
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 8 cut(s) 28, 46, 51, 96, 100, 136, 181, 187
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 266, 439
MspR9I CCNGG 1 cut(s) 266
MvnI CGCG 3 cut(s) 117, 354, 356
MwoI GCNNNNNNNGC 2 cut(s) 62, 431
NciI CCSGG 1 cut(s) 266
NdeII GATC 3 cut(s) 167, 225, 378
NlaIII CATG 2 cut(s) 310, 373
PagI TCATGA 1 cut(s) 306
PauI GCGCGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 199
Pfl23II CGTACG 1 cut(s) 405
PkrI GCNGC 2 cut(s) 55, 433
PleI GAGTC 1 cut(s) 263
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
PpsI GAGTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 216
PspCI CACGTG 1 cut(s) 216
PspLI CGTACG 1 cut(s) 405
PteI GCGCGC 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 4 cut(s) 163, 192, 261, 407
RsaNI GTAC 4 cut(s) 162, 191, 260, 406
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 400
SatI GCNGC 2 cut(s) 54, 432
Sau3AI GATC 3 cut(s) 167, 225, 378
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 266
SetI ASST 6 cut(s) 176, 192, 218, 273, 325, 436
SfaNI GCATC 1 cut(s) 331
SsiI CCGC 7 cut(s) 51, 54, 110, 123, 296, 356, 367
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 4 cut(s) 107, 142, 242, 284
TaiI ACGT 2 cut(s) 218, 273
TaqI TCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 2 cut(s) 283, 464
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 295, 323
TspRI CASTG 2 cut(s) 283, 464
XmiI GTMKAC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.