Rh6AG432200

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017105
Physical Location & Seq
Forward (+)
62259303 .. 62262693
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG432200.1

Sequence Viewer

Length: 615 bp
ATGGAATGGATAAGCCCCTGGTTCGTTAACCTAACCACGGTTAACGAAACCTCCTCATTTGGGCCCTTTCTCTATAAATCACAGAGCCCCCACACCAATTTCGTCAGAAATCTCCATCCAACAAGTTTATCCAAACAACCTGAAATCCACACAATGATGTCCATTTCATCTTCGTCATTCACCGCCTCCTCATCTCTCTTTTCCGGCCGGACCCTCGTCATCGACGCTCCGAACTCGCCGTCGTCCATCAAGTACCGTCCGATGAGCATCTCGGCCTCATGCGCATCAACGGTCGACAGGCCCCGCATCCACATTGGGACAAATCCGTCCCTCTATGAAGTCCTCGGCATTCACACGGGCGCCACGTGTCAGGAAATCAAGACCGCTTACCGCAGATTGGCCAGAGTCGTGCACCCTGACGCCACCGCAGCTAACGGTCAAAGTTCCTCCGACGAGTTCATGAAGGTCCACGAGGCTTATGCCACTCTCTCCGACGCCCAAAAGCGCGCCGACTACGACCGCAGGATGCTTATCCGGCGGCCGGTGCCGATGAGCTCTTCCTTCTCAATGTCGTCGTCGACGGGAAGGAGATGGGAAACCGATCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

204

Amino Acids

22.78

Weight (kDa)

9.3

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 111 - 173 2.1e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38340
prunus_persica Prupe.1G364400_v2.0.a1
pyrus_communis pycom08g01060 pycom15g01000
rosa_chinensis RchiOBHm_Chr6g0303011
rosa_laevigata RLG00000011118
rosa_multiflora Rmu_ssc0000460.1_g000030
rosa_roxburghii Rroxscaffold_7G00165110
rosa_rugosa Rorug06G0318400
rosa_samantha Rh6AG432200 Rh6BG470300 Rh6DG431400
rosa_wichuraiana Rw6G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 325
Acc16I TGCGCA 1 cut(s) 283
AccB1I GGYRCC 2 cut(s) 359, 544
AccI GTMKAC 2 cut(s) 294, 578
AccII CGCG 1 cut(s) 507
AciI CCGC 7 cut(s) 183, 304, 384, 391, 426, 520, 538
AcoI YGGCCR 3 cut(s) 205, 399, 539
AcvI CACGTG 1 cut(s) 366
AcyI GRCGYC 3 cut(s) 360, 420, 495
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 37, 60, 397, 541
AflIII ACRYGT 1 cut(s) 365
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 2 cut(s) 431, 555
AluI AGCT 2 cut(s) 431, 555
Alw21I GWGCWC 2 cut(s) 414, 557
Alw44I GTGCAC 1 cut(s) 410
AoxI GGCC 6 cut(s) 62, 205, 273, 299, 399, 539
ApaI GGGCCC 1 cut(s) 66
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 4 cut(s) 284, 362, 507, 509
AspS9I GGNCC 5 cut(s) 62, 63, 210, 300, 466
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 210, 466
BaeGI GKGCMC 2 cut(s) 66, 414
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 2 cut(s) 359, 544
BanII GRGCYC 3 cut(s) 66, 89, 557
BauI CACGAG 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 414, 557
BbvI GCAGC 1 cut(s) 440
BccI CCATC 3 cut(s) 123, 254, 585
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 1 cut(s) 19
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 2 cut(s) 429, 539
BlsI GCNGC 2 cut(s) 430, 540
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 210, 466
BmgT120I GGNCC 5 cut(s) 62, 63, 210, 300, 466
BmiI GGNNCC 5 cut(s) 64, 212, 302, 361, 546
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 4 cut(s) 276, 293, 315, 516
BoxI GACNNNNGTC 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 366
BsaBI GATNNNNATC 2 cut(s) 266, 530
BsaHI GRCGYC 3 cut(s) 360, 420, 495
BsaJI CCNNGG 3 cut(s) 17, 36, 343
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 60, 397, 541
Bse118I RCCGGY 1 cut(s) 541
Bse8I GATNNNNATC 2 cut(s) 266, 530
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 3 cut(s) 17, 36, 343
BseGI GGATG 3 cut(s) 115, 306, 531
BseJI GATNNNNATC 2 cut(s) 266, 530
BseLI CCNNNNNNNGG 4 cut(s) 37, 60, 397, 541
BsePI GCGCGC 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 43, 178
BseSI GKGCMC 2 cut(s) 66, 414
BseX3I CGGCCG 2 cut(s) 205, 539
BseXI GCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 507
Bsh1285I CGRYCG 4 cut(s) 208, 294, 520, 542
BshFI GGCC 6 cut(s) 64, 207, 275, 301, 401, 541
BshNI GGYRCC 2 cut(s) 359, 544
BsiEI CGRYCG 4 cut(s) 208, 294, 520, 542
BsiHKAI GWGCWC 2 cut(s) 414, 557
BsiSI CCGG 4 cut(s) 204, 208, 535, 542
BslFI GGGAC 2 cut(s) 313, 331
BslI CCNNNNNNNGG 4 cut(s) 37, 60, 397, 541
BsmFI GGGAC 2 cut(s) 313, 331
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 6 cut(s) 64, 207, 275, 301, 401, 541
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 66, 89, 414, 557
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 7 cut(s) 183, 304, 384, 391, 426, 520, 538
BspANI GGCC 6 cut(s) 64, 207, 275, 301, 401, 541
BspFNI CGCG 1 cut(s) 507
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 5 cut(s) 64, 212, 302, 361, 546
BspQI GCTCTTC 1 cut(s) 562
BspT107I GGYRCC 2 cut(s) 359, 544
BsrFI RCCGGY 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 17, 36, 343
BssHII GCGCGC 1 cut(s) 505
BssMI GATC 1 cut(s) 601
BssNI GRCGYC 3 cut(s) 360, 420, 495
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 4 cut(s) 40, 257, 292, 437
Bst6I CTCTTC 1 cut(s) 562
BstACI GRCGYC 3 cut(s) 360, 420, 495
BstBAI YACGTR 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 507
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 115, 306, 531
BstFNI CGCG 1 cut(s) 507
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 4 cut(s) 284, 362, 507, 509
BstKTI GATC 1 cut(s) 604
BstMBI GATC 1 cut(s) 601
BstMCI CGRYCG 4 cut(s) 208, 294, 520, 542
BstMWI GCNNNNNNNGC 4 cut(s) 281, 428, 535, 544
BstNI CCWGG 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 17
BstSLI GKGCMC 2 cut(s) 66, 414
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 440
BstZI CGGCCG 2 cut(s) 205, 539
BsuRI GGCC 6 cut(s) 64, 207, 275, 301, 401, 541
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 115, 306, 531
BtsIMutI CAGTG 1 cut(s) 611
Cac8I GCNNGC 1 cut(s) 507
CciI TCATGA 1 cut(s) 459
CfoI GCGC 4 cut(s) 284, 362, 507, 509
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 5 cut(s) 62, 63, 210, 300, 466
CseI GACGC 3 cut(s) 233, 428, 503
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 279, 460
CviQI GTAC 1 cut(s) 253
DinI GGCGCC 1 cut(s) 361
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
DrdI GACNNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 3 cut(s) 205, 399, 539
EagI CGGCCG 2 cut(s) 205, 539
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Ecl136II GAGCTC 1 cut(s) 555
EclXI CGGCCG 2 cut(s) 205, 539
Eco24I GRGCYC 3 cut(s) 66, 89, 557
Eco47I GGWCC 2 cut(s) 210, 466
Eco52I CGGCCG 2 cut(s) 205, 539
Eco53kI GAGCTC 1 cut(s) 555
Eco72I CACGTG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 555
EcoO109I RGGNCCY 2 cut(s) 63, 300
EcoRII CCWGG 1 cut(s) 17
EcoT38I GRGCYC 3 cut(s) 66, 89, 557
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
FaeI CATG 2 cut(s) 282, 463
FaiI YATR 5 cut(s) 75, 280, 336, 461, 480
FaqI GGGAC 2 cut(s) 313, 331
FatI CATG 2 cut(s) 278, 459
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 2 cut(s) 294, 578
Fnu4HI GCNGC 2 cut(s) 429, 539
FokI GGATG 3 cut(s) 102, 293, 538
FriOI GRGCYC 3 cut(s) 66, 89, 557
Fsp4HI GCNGC 2 cut(s) 429, 539
FspAI RTGCGCAY 1 cut(s) 283
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 4 cut(s) 283, 361, 506, 508
GluI GCNGC 2 cut(s) 429, 539
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 6 cut(s) 64, 207, 275, 301, 401, 541
HapII CCGG 4 cut(s) 204, 208, 535, 542
HgaI GACGC 3 cut(s) 233, 428, 503
HhaI GCGC 4 cut(s) 284, 362, 507, 509
Hin1I GRCGYC 3 cut(s) 360, 420, 495
Hin1II CATG 2 cut(s) 282, 463
Hin6I GCGC 4 cut(s) 282, 360, 505, 507
HinP1I GCGC 4 cut(s) 282, 360, 505, 507
HincII GTYRAC 4 cut(s) 28, 43, 295, 579
HindII GTYRAC 4 cut(s) 28, 43, 295, 579
HinfI GANTC 1 cut(s) 405
HpaI GTTAAC 2 cut(s) 28, 43
HpaII CCGG 4 cut(s) 204, 208, 535, 542
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 6 cut(s) 28, 43, 295, 412, 469, 579
Hpy188I TCNGA 5 cut(s) 107, 231, 261, 451, 493
Hpy188III TCNNGA 3 cut(s) 371, 379, 460
Hpy8I GTNNAC 6 cut(s) 28, 43, 295, 412, 469, 579
Hpy99I CGWCG 7 cut(s) 227, 244, 455, 497, 577, 580, 583
HpyAV CCTTC 3 cut(s) 457, 571, 579
HpyCH4III ACNGT 4 cut(s) 40, 257, 292, 437
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 428, 535, 544
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 3 cut(s) 360, 420, 495
Hsp92II CATG 2 cut(s) 282, 463
HspAI GCGC 4 cut(s) 282, 360, 505, 507
KasI GGCGCC 1 cut(s) 359
KspAI GTTAAC 2 cut(s) 28, 43
Kzo9I GATC 1 cut(s) 601
LguI GCTCTTC 1 cut(s) 562
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 4 cut(s) 276, 293, 315, 516
MaeII ACGT 1 cut(s) 365
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MboII GAAGA 2 cut(s) 162, 549
MhlI GDGCHC 4 cut(s) 66, 89, 414, 557
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 401
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 1 cut(s) 414
MmeI TCCRAC 3 cut(s) 143, 474, 516
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 2 cut(s) 27, 42
MslI CAYNNNNRTG 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 4 cut(s) 204, 208, 535, 542
MspR9I CCNGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 4 cut(s) 281, 428, 535, 544
NarI GGCGCC 1 cut(s) 360
NdeII GATC 1 cut(s) 601
NlaIII CATG 2 cut(s) 282, 463
NlaIV GGNNCC 5 cut(s) 64, 212, 302, 361, 546
NmeAIII GCCGAG 2 cut(s) 251, 324
NsbI TGCGCA 1 cut(s) 283
PagI TCATGA 1 cut(s) 459
PauI GCGCGC 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 348
PkrI GCNGC 2 cut(s) 430, 540
PleI GAGTC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 363
PmaCI CACGTG 1 cut(s) 366
PmlI CACGTG 1 cut(s) 366
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 366
PshAI GACNNNNGTC 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 17
PspCI CACGTG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 5 cut(s) 64, 212, 302, 361, 546
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 5 cut(s) 62, 63, 210, 300, 466
PteI GCGCGC 1 cut(s) 505
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 557
SalI GTCGAC 2 cut(s) 293, 577
SapI GCTCTTC 1 cut(s) 562
SaqAI TTAA 2 cut(s) 27, 42
SatI GCNGC 2 cut(s) 429, 539
Sau3AI GATC 1 cut(s) 601
Sau96I GGNCC 5 cut(s) 62, 63, 210, 300, 466
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 4 cut(s) 66, 89, 414, 557
SetI ASST 7 cut(s) 33, 53, 142, 368, 433, 468, 557
SfaNI GCATC 4 cut(s) 276, 293, 315, 516
SfoI GGCGCC 1 cut(s) 361
SgrDI CGTCGACG 1 cut(s) 577
SinI GGWCC 2 cut(s) 210, 466
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 97
SsiI CCGC 7 cut(s) 183, 304, 384, 391, 426, 520, 538
SspDI GGCGCC 1 cut(s) 359
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 4 cut(s) 40, 257, 292, 437
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 222, 294, 578
TasI AATT 1 cut(s) 97
TauI GCSGC 1 cut(s) 541
Tru1I TTAA 2 cut(s) 27, 42
Tru9I TTAA 2 cut(s) 27, 42
TscAI CASTG 1 cut(s) 611
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 4 cut(s) 156, 351, 448, 476
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 2 cut(s) 210, 466
XmiI GTMKAC 2 cut(s) 294, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.