Rorug06G0318400

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017105
Physical Location & Seq
Forward (+)
47018320 .. 47019806
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0318400.1

Sequence Viewer

Length: 444 bp
ATGGCAGAAGCTTTAACAGAAAGCCAGATTGCTGAGTTCCAGGAAGCCTTTTGTCTGATTGACAAAGATTCAGATGGGGTTATAACCTTGGAAGAACTAGCCTCGGTGATCCAATCACTAGATGAACGTCCGACGAAAGAAGAAGTTCATGACATGATTAGTGAGATTGGTGCTGATGGAAATGGAACAATAGATTTTGAAGAGTTCTTGAATATCATGGCAAGGAAGATGCAGGAAAACGTTGCTGAGGAGCTAAAAGAAGCATTCAAAGTATTTGACAGGGATCAAGACGGTTATATTTCAGCTTCTGAGTTGAGACAGGTGATGATAAACTTGGGAGAAAGATTGAGTAATGAAGAGGCTGAGCAAATGATCAAAGAGGCTGATTTGGATGGTGACGGTCTAGTTAGCTATGAAGAATTTGCAAGGATGATGCTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

147

Amino Acids

16.6

Weight (kDa)

4.05

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 12 - 39 1e-06 EF hand domain
EF-hand_7 PF13499 12 - 73 3.1e-14 EF-hand domain pair
EF-hand_6 PF13405 12 - 40 3.3e-06 EF-hand domain
EF-hand_8 PF13833 24 - 75 1.6e-08 EF-hand domain pair
EF-hand_1 PF00036 48 - 75 1.8e-06 EF hand domain
EF-hand_7 PF13499 83 - 145 1.5e-19 EF-hand domain pair
EF-hand_1 PF00036 84 - 111 3.2e-09 EF hand domain
EF-hand_6 PF13405 84 - 113 1.7e-09 EF-hand domain
EF-hand_5 PF13202 85 - 109 3.7e-08 EF hand
EF-hand_8 PF13833 105 - 145 4.2e-07 EF-hand domain pair
EF-hand_1 PF00036 120 - 145 1.6e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38340
prunus_persica Prupe.1G364400_v2.0.a1
pyrus_communis pycom08g01060 pycom15g01000
rosa_chinensis RchiOBHm_Chr6g0303011
rosa_laevigata RLG00000011118
rosa_multiflora Rmu_ssc0000460.1_g000030
rosa_roxburghii Rroxscaffold_7G00165110
rosa_rugosa Rorug06G0318400
rosa_samantha Rh6AG432200 Rh6BG470300 Rh6DG431400
rosa_wichuraiana Rw6G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AclI AACGTT 1 cut(s) 240
AclWI GGATC 2 cut(s) 103, 291
AcsI RAATTY 1 cut(s) 419
AgsI TTSAA 3 cut(s) 200, 211, 268
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 5 cut(s) 11, 253, 305, 411, 441
AluI AGCT 5 cut(s) 11, 253, 305, 411, 441
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 2 cut(s) 103, 291
AlwNI CAGNNNCTG 1 cut(s) 308
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 118, 334, 407
BbvCI CCTCAGC 1 cut(s) 246
BccI CCATC 3 cut(s) 68, 170, 386
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 4 cut(s) 98, 119, 404, 442
BlpI GCTNAGC 2 cut(s) 363, 437
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 219, 423
Bpu10I CCTNAGC 1 cut(s) 246
Bpu1102I GCTNAGC 2 cut(s) 363, 437
BsaJI CCNNGG 2 cut(s) 87, 102
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 87, 102
BseGI GGATG 2 cut(s) 397, 435
BseMII CTCAG 4 cut(s) 24, 237, 300, 354
BseRI GAGGAG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 263
Bsp143I GATC 3 cut(s) 108, 283, 372
Bsp1720I GCTNAGC 2 cut(s) 363, 437
BspCNI CTCAG 4 cut(s) 25, 238, 301, 355
BspHI TCATGA 1 cut(s) 148
BspPI GGATC 2 cut(s) 103, 291
BssECI CCNNGG 2 cut(s) 87, 102
BssMI GATC 3 cut(s) 108, 283, 372
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 293, 401
Bst6I CTCTTC 2 cut(s) 195, 351
BstDEI CTNAG 5 cut(s) 33, 246, 309, 363, 437
BstF5I GGATG 2 cut(s) 397, 435
BstKTI GATC 3 cut(s) 111, 286, 375
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 3 cut(s) 108, 283, 372
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 397, 435
CaiI CAGNNNCTG 1 cut(s) 308
CciI TCATGA 1 cut(s) 148
CviAII CATG 3 cut(s) 149, 154, 217
DdeI CTNAG 5 cut(s) 33, 246, 309, 363, 437
DpnI GATC 3 cut(s) 110, 285, 374
DpnII GATC 3 cut(s) 108, 283, 372
Eam1104I CTCTTC 2 cut(s) 195, 351
EarI CTCTTC 2 cut(s) 195, 351
Eco130I CCWWGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 152, 157, 220
FaiI YATR 6 cut(s) 83, 150, 155, 218, 297, 414
FatI CATG 3 cut(s) 148, 153, 216
FbaI TGATCA 1 cut(s) 372
FokI GGATG 1 cut(s) 404
FspBI CTAG 4 cut(s) 98, 119, 404, 442
Hin1II CATG 3 cut(s) 152, 157, 220
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 68
HphI GGTGA 3 cut(s) 118, 334, 407
Hpy188I TCNGA 4 cut(s) 57, 73, 132, 310
Hpy188III TCNNGA 3 cut(s) 149, 208, 287
Hpy99I CGWCG 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 293, 401
HpyCH4IV ACGT 2 cut(s) 127, 240
HpyCH4V TGCA 2 cut(s) 232, 425
HpyF3I CTNAG 5 cut(s) 33, 246, 309, 363, 437
HpySE526I ACGT 2 cut(s) 127, 240
Hsp92II CATG 3 cut(s) 152, 157, 220
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 108, 283, 372
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 6 cut(s) 26, 38, 53, 218, 265, 305
LweI GCATC 2 cut(s) 219, 423
MaeI CTAG 4 cut(s) 98, 119, 404, 442
MaeII ACGT 2 cut(s) 127, 240
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 110, 285, 374
MboI GATC 3 cut(s) 108, 283, 372
MboII GAAGA 6 cut(s) 104, 152, 212, 238, 368, 428
MluCI AATT 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 4 cut(s) 112, 241, 352, 373
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 41
NdeII GATC 3 cut(s) 108, 283, 372
NlaIII CATG 3 cut(s) 152, 157, 220
NmuCI GTSAC 1 cut(s) 395
PagI TCATGA 1 cut(s) 148
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 39
PsiI TTATAA 1 cut(s) 83
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 3 cut(s) 108, 283, 372
ScrFI CCNGG 1 cut(s) 41
SetI ASST 9 cut(s) 13, 89, 130, 243, 255, 307, 324, 413, 443
SfaNI GCATC 2 cut(s) 219, 423
Sse9I AATT 1 cut(s) 419
SspMI CTAG 4 cut(s) 98, 119, 404, 442
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 293, 401
TaiI ACGT 2 cut(s) 130, 243
TasI AATT 1 cut(s) 419
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 137, 138, 369, 429
XapI RAATTY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 4 cut(s) 98, 119, 404, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.