Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007254

Physical Location & Seq

Genomic Coordinates Reverse (-)

27949027 .. 27954726

Gene Structure 5700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3276 bp

ATGGACCGACGGAGTTGGCCGTGGAAGAAAAAGTCGTCATCAGACAAAGCTGCGACTGAGAAGGCCTTAGCGGTAGTAGAGTCTACTCCGAAGTCTCAGGCAGAGAAGGATAACTACAAGAAACCAAATTATGTTCAAATTTCGGTGGAGCAATATACACATCTGAATGGTTTGGAGGATCAAGTGAAGAATTATGAGAGTCAAGTGAAGGCATATGAGAATCAGGTGAATGCATATGAGGATCAAGTGAAGACGTATGAGGACCAATTTCAGACATTGGAGGATCAGATTACAGATTTGAACGAACAGCTCTCCACAGCCCAATCTGAGATCAGTACCCAGGAGGGCCTCGTGAAACAGCATGCTAAAGTTGCCGAAGAAGCTGTCTCAGGTTGGGAAAAGGCTGAAGCAGAAGCTCTTGCATTAAAAACTCATTTAGAATCTGTAACACTTTTGAAGCTGACTGCTGAAGATCGAGCATCCCATTTGGATGGTGCTCTCAAAGAGTGCATGCGACAGATTAGAAATCTGAAGGAAGATCATGAACAGAAATTGCAAGAAGTTGTTATCACCAAAACAAAGCAATGTGACAAAATCAAGCATGAGCTCGAAACAAGGATAGCTAATTTAGACCAAGAGCTTCTAAGGTCTGCTGCTGAAAATGCTGCTATTTCAAGGTCCTTACAAGAGCGGTCAAACATGCTATACAAGATAAACGAAGAGAAGTCACAAGCTGAGGCTGAAATTGAGCGTTTCAAGAGCAACCTTGAGTCTTGTGAACGGGAAATCAACTCTCTGAAATATGAACTTCACATAGCTGCCAAGGAGCTGGAAATTCGTACAGAGGAAAAGAACATGAGTGTGAGGTCTGCAGATGCAGCCAACAAGCAGCATATGGAGGGTGTAAAAAAGATTACTAAGCTAGAAGCAGAGTGCCAAAGATTGCGTGGTCTTGTGCGGAAGAAGTTGCCTGGTCCTGCTGCACTTGCCCAAATGAAGTTAGAGGTTGAGAGTTTAGGCAGAGATTATGGAGAAACTCGATTAAAGAGATCTCCTGTTAAGCCTTCTAGTCCACAGATGTCCCAGGTGACTGAGTTTTCTCTTGACAATGTACAGAAGTTTCAGAAGGAGAATGAATTCCTGACAGAACGGTTACTAGCAATGGAAGAAGAAACAAAAATGCTAAAAGAAGCTCTGTCAAAACGTAACAGCGAATTGCAGGCTTCAAGGAGCATTTGTGCGAAGACAGTCAGCAAACTTCAAACATTAGAAGCACAGCTTCAGATCACTGGTCAACAGAAAGGTTCCCCAAAATCTGTTGTTCACATCAGCACTGAAGGTTCCTTGAGTCGGAATGCAAGCATTCCACCAAGTTTCGCCTCCATGTCTGAAGATGGAAATGATGATGACAGAAGCTGTGCTGAGTCTTGGGGCACAACATTGAATTCTGATCTCTCACACAGCAAGAAAGAGAAGAACAATGAAAAGTCGAGCAAAGCTGAAAATCAAAATCATTTGAATCTTATGGATGATTTTCTGGAGATGGAGAAGTTGGCTTGCTTGCCTAATGACTCAAATGGCGTTAAGACATCTGAAATAGAGATCAATGAGGCATCAGGAGAAGTCACTGCCACAAAAGATATCCACTCTGAGCAGCAGCATGAAGCATCTTTCAACGGGGACCTGTCAGTTCTCAGTCCTGGAGCTAATGAAAACAAGCTGCCTCTGGTGAAGCTCCGATCAAGAATCTCAGTGCTCTTAGAATTATTATCCAAGGACACTGATTTTGTTAAAGTTATCGAGGATATCAAGCACGTGGTCCAGGAAGCACAAGATGCTCTGCAGCCTCACACTGTAAACAGTGTTTCTGAAGAAATTCACAGCGCTGATGCCATATGTGATACGCAGGCACACCCTGAGGACTCTGTTTTTAGTACAGAAAAGGAAACCACAGCCAAAGAGACAATGAGTGCAATAAGTGAAGAACTGGCATCTGCCATTTCCTTGATCCATGACTTTGTGGTGTTCTTAGGCAAAGAAGTGGTGGGAGTCCATGACACGTTTCCTGATAGCAATGAATTAAGTCAGAAGATTGAAGAATTTTCTGGCACATTTAGTAAAGTTATTCATGGGAACTTAAGTTTGGTTGATTTGGTTCTTGACCTTTCTCATGTGTTAGCAAATGCCAGTGAACTCAAGTTTAATGTTATAGGCTTCCCGGGTGTTGAAGCAGGAAGAAATAGTCCTGATTGTATTGACAAGGTTGCCCTACCAGAGAATAAGGTGGTTGAGAGGGATTCATCACAAAGATATCAAAATCATTGTGTCGACATTTCTAATCATTCTAACCCTGAAGTTCCTGATGATGGAAATTTAGTTTCCAGTTTTGGGTCAGAGGCCTCCCCATGCAAAATCTCAGTGGAGGAGTTTGAGCAACTGAAATCAGAGAAAGATAACCTTGCGATGGATTTGGCAAGATGCATGGAAAATTTGAACATGTCTACGTCAAAGTTACAGGACACTGAGCAGCTTCTTGCAGAAGCTAAAACACAATTTGCTTCAGCTCAAAATTCAAACAGCTTGAGTGAGACACAGCTAAAATGTATGGCAGAATCATACAGGACACTGGAATCACGAGCCCAGGAGTTAGAAACTGAACTGAAACTACTACAAATCAGAACTGAAACTCTGGAAAAGGAGCTGGAAGAAGAAAAGAGGAATCATCAAGATGCTTTGGCCAGATGCACAGAACTTCAAGAAGAGTTGAAAAGGCAGGAGACCTTATTAGCCGAGACAGCAGCTGAGACAGAATTCAAGACCAAACAGGACAGGGAATTGGCGGATGCAGCAGAGAAGCTTGCAGAGTGTCAAGAAACCATATTTCTTCTCGGCAAGCAGTTGAAATCATTGCATCCTCAATCAGAGGCCATGGGATCTCCATACAATGAGAGGAGTCTAAAGGGTGAAGGGTTCACCGAGGATGAACCCACCACCCCCAGAGCCATGAATTTACACGACTCCGATCAAGCTGAGATGGATGGTGGTGCTTCTCCCAATGTTCTTAGAGCGGGTGGCGAGTCACCCATCTATCTGTACAATGCACCATGCAGCCCAGATGGGAACAATCCCTTGAAATCGCCTAGTAATGGCGTAACTCCAAACCACAGGCCAACAAAGTCTAGTTCCTCATCCGGCGGCTCTTCTAACCCAACACCGGAGAAACATCCTCGCGGATTCAGCAGGTTTTTCTCCTCCAAGGGAAAGAATGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015631 GO:0016020 GO:0016043 GO:0022607 GO:0030154 GO:0031109 GO:0032502 GO:0032989 GO:0034622 GO:0043933 GO:0044085 GO:0044464 GO:0046785 GO:0048468 GO:0048856 GO:0048869 GO:0051258 GO:0065003 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

1092

Amino Acids

121.64

Weight (kDa)

5.09

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	25 - 182	1.4e-06	Coiled-coil domain-containing protein 39
FPP	PF05911	90 - 917	0.0	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835
fragaria_vesca	FvH4_2g38730 FvH4_2g38730 FvH4_2g38730
malus_domestica	MD08G1015000.v1.1
prunus_persica	Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1
pyrus_communis	pycom08g01340 pycom15g01230
rosa_chinensis	RchiOBHm_Chr6g0302571
rosa_laevigata	RLG00000011160
rosa_multiflora	Rmu_sc0005455.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165600
rosa_rugosa	Rorug06G0315100
rosa_samantha	Rh6AG428500 Rh6BG474100 Rh6CG440700 Rh6DG427500
rosa_wichuraiana	Rw6G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3231
AccBSI	CCGCTC	2 cut(s)	691, 3068
AccI	GTMKAC	3 cut(s)	83, 2328, 2501
AccII	CGCG	1 cut(s)	3231
AciI	CCGC	7 cut(s)	71, 691, 958, 2840, 3068, 3195, 3231
AclWI	GGATC	5 cut(s)	186, 249, 291, 2002, 2941
AcoI	YGGCCR	2 cut(s)	17, 2736
AcuI	CTGAAG	9 cut(s)	426, 489, 551, 1265, 1356, 1410, 1890, 2373, 2544
AcvI	CACGTG	1 cut(s)	1816
AfaI	GTAC	5 cut(s)	337, 841, 1113, 1936, 3095
AfeI	AGCGCT	1 cut(s)	1885
AfiI	CCNNNNNNNGG	6 cut(s)	1350, 2366, 2388, 2464, 3146, 3214
AflII	CTTAAG	1 cut(s)	2137
AflIII	ACRYGT	2 cut(s)	2058, 2496
AjnI	CCWGG	6 cut(s)	339, 970, 1083, 1699, 1821, 2640
AjuI	GAANNNNNNNTTGG	2 cut(s)	2126, 2158
Alw21I	GWGCWC	3 cut(s)	499, 609, 1758
Alw26I	GTCTC	7 cut(s)	99, 391, 1955, 2582, 2771, 2786, 2798
AlwI	GGATC	5 cut(s)	186, 249, 291, 2002, 2941
AlwNI	CAGNNNCTG	2 cut(s)	1416, 2801
Ama87I	CYCGRG	1 cut(s)	2218
Aor51HI	AGCGCT	1 cut(s)	1885
AoxI	GGCC	7 cut(s)	17, 63, 346, 2397, 2736, 2925, 3167
ArsI	GACNNNNNNTTYG	4 cut(s)	369, 401, 1769, 1801
Asp700I	GAANNNNTTC	2 cut(s)	1136, 1875
AspLEI	GCGC	1 cut(s)	1886
AspS9I	GGNCC	7 cut(s)	4, 262, 346, 678, 974, 1681, 1819
AsuC2I	CCSGG	2 cut(s)	2219, 2220
AsuHPI	GGTGA	7 cut(s)	238, 562, 1099, 1741, 2965, 2975, 3072
AvaI	CYCGRG	1 cut(s)	2218
AvaII	GGWCC	6 cut(s)	4, 262, 678, 974, 1681, 1819
AxyI	CCTNAGG	1 cut(s)	1917
BaeGI	GKGCMC	1 cut(s)	1436
BalI	TGGCCA	1 cut(s)	2738
BanII	GRGCYC	2 cut(s)	609, 2641
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	2 cut(s)	350, 2634
BbrPI	CACGTG	1 cut(s)	1816
BbsI	GAAGAC	2 cut(s)	257, 1250
Bbv12I	GWGCWC	3 cut(s)	499, 609, 1758
BbvCI	CCTCAGC	1 cut(s)	735
BccI	CCATC	9 cut(s)	485, 1388, 1537, 2360, 2458, 3028, 3032, 3092, 3110
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	6 cut(s)	341, 972, 1085, 1701, 1823, 2642
BcnI	CCSGG	2 cut(s)	2219, 2220
BcoDI	GTCTC	7 cut(s)	99, 391, 1955, 2582, 2771, 2786, 2798
BfaI	CTAG	6 cut(s)	923, 1068, 1157, 3141, 3180, 3274
BfmI	CTRYAG	2 cut(s)	870, 1841
BfoI	RGCGCY	1 cut(s)	1887
BfrI	CTTAAG	1 cut(s)	2137
BfuAI	ACCTGC	1 cut(s)	3231
BglII	AGATCT	1 cut(s)	1049
Bme1390I	CCNGG	8 cut(s)	341, 972, 1085, 1701, 1823, 2219, 2220, 2642
Bme18I	GGWCC	6 cut(s)	4, 262, 678, 974, 1681, 1819
BmeT110I	CYCGRG	1 cut(s)	2218
BmgT120I	GGNCC	7 cut(s)	4, 262, 346, 678, 974, 1681, 1819
BmiI	GGNNCC	3 cut(s)	1306, 1342, 1682
BmrFI	CCNGG	8 cut(s)	341, 972, 1085, 1701, 1823, 2219, 2220, 2642
BpiI	GAAGAC	2 cut(s)	257, 1250
BpmI	CTGGAG	2 cut(s)	1559, 1722
Bpu10I	CCTNAGC	2 cut(s)	67, 735
BpuEI	CTTGAG	4 cut(s)	788, 1366, 2180, 2602
BpuMI	CCSGG	2 cut(s)	2219, 2220
BsaAI	YACGTR	1 cut(s)	1816
BsaI	GGTCTC	1 cut(s)	2771
BsaWI	WCCGGW	1 cut(s)	3214
BsaXI	ACNNNNNCTCC	2 cut(s)	1222, 1252
Bsc4I	CCNNNNNNNGG	6 cut(s)	1350, 2366, 2388, 2464, 3146, 3214
Bse1I	ACTGG	5 cut(s)	1294, 1992, 2187, 2382, 2631
Bse21I	CCTNAGG	1 cut(s)	1917
Bse3DI	GCAATG	4 cut(s)	590, 1167, 2080, 2906
BseBI	CCWGG	6 cut(s)	341, 972, 1085, 1701, 1823, 2642
BseGI	GGATG	9 cut(s)	479, 496, 1534, 2848, 2911, 2986, 3043, 3188, 3223
BseLI	CCNNNNNNNGG	6 cut(s)	1350, 2366, 2388, 2464, 3146, 3214
BseMI	GCAATG	4 cut(s)	590, 1167, 2080, 2906
BseNI	ACTGG	5 cut(s)	1294, 1992, 2187, 2382, 2631
BseRI	GAGGAG	3 cut(s)	2438, 2965, 3241
BseSI	GKGCMC	1 cut(s)	1436
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	1 cut(s)	3231
BshFI	GGCC	7 cut(s)	19, 65, 348, 2399, 2738, 2927, 3169
BsiHKAI	GWGCWC	3 cut(s)	499, 609, 1758
BsiHKCI	CYCGRG	1 cut(s)	2218
BsiSI	CCGG	3 cut(s)	2219, 3192, 3215
BslFI	GGGAC	2 cut(s)	1066, 1694
BslI	CCNNNNNNNGG	6 cut(s)	1350, 2366, 2388, 2464, 3146, 3214
BsmAI	GTCTC	7 cut(s)	99, 391, 1955, 2582, 2771, 2786, 2798
BsmFI	GGGAC	2 cut(s)	1066, 1694
BsmI	GAATGC	3 cut(s)	235, 1360, 1362
BsnI	GGCC	7 cut(s)	19, 65, 348, 2399, 2738, 2927, 3169
Bso31I	GGTCTC	1 cut(s)	2771
BsoBI	CYCGRG	1 cut(s)	2218
Bsp1286I	GDGCHC	5 cut(s)	499, 609, 1436, 1758, 2641
Bsp1407I	TGTACA	2 cut(s)	1111, 3093
Bsp19I	CCATGG	1 cut(s)	2928
BspACI	CCGC	7 cut(s)	71, 691, 958, 2840, 3068, 3195, 3231
BspANI	GGCC	7 cut(s)	19, 65, 348, 2399, 2738, 2927, 3169
BspFNI	CGCG	1 cut(s)	3231
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	1306, 1342, 1682
BspMAI	CTGCAG	2 cut(s)	874, 1845
BspMI	ACCTGC	1 cut(s)	3231
BspPI	GGATC	5 cut(s)	186, 249, 291, 2002, 2941
BspQI	GCTCTTC	1 cut(s)	3205
BspTI	CTTAAG	1 cut(s)	2137
BspTNI	GGTCTC	1 cut(s)	2771
BsrBI	CCGCTC	2 cut(s)	691, 3068
BsrDI	GCAATG	4 cut(s)	590, 1167, 2080, 2906
BsrGI	TGTACA	2 cut(s)	1111, 3093
BsrI	ACTGG	5 cut(s)	1294, 1992, 2187, 2382, 2631
BssSI	CACGAG	2 cut(s)	350, 2634
BssT1I	CCWWGG	4 cut(s)	822, 1773, 2928, 3255
Bst2BI	CACGAG	2 cut(s)	350, 2634
Bst2UI	CCWGG	6 cut(s)	341, 972, 1085, 1701, 1823, 2642
Bst4CI	ACNGT	4 cut(s)	1152, 1249, 1855, 1862
Bst6I	CTCTTC	3 cut(s)	714, 2754, 3205
BstAFI	CTTAAG	1 cut(s)	2137
BstAPI	GCANNNNNTGC	1 cut(s)	1835
BstAUI	TGTACA	2 cut(s)	1111, 3093
BstBAI	YACGTR	1 cut(s)	1816
BstC8I	GCNNGC	9 cut(s)	363, 512, 1221, 1360, 1558, 1562, 1908, 2859, 2894
BstDSI	CCRYGG	2 cut(s)	20, 2928
BstF5I	GGATG	9 cut(s)	479, 496, 1534, 2848, 2911, 2986, 3043, 3188, 3223
BstFNI	CGCG	1 cut(s)	3231
BstH2I	RGCGCY	1 cut(s)	1887
BstHHI	GCGC	1 cut(s)	1886
BstMAI	GTCTC	7 cut(s)	99, 391, 1955, 2582, 2771, 2786, 2798
BstMWI	GCNNNNNNNGC	9 cut(s)	371, 380, 662, 878, 986, 1835, 2795, 2846, 3237
BstNI	CCWGG	6 cut(s)	341, 972, 1085, 1701, 1823, 2642
BstNSI	RCATGY	4 cut(s)	365, 514, 703, 2500
BstSCI	CCNGG	8 cut(s)	339, 970, 1083, 1699, 1821, 2217, 2218, 2640
BstSFI	CTRYAG	2 cut(s)	870, 1841
BstSLI	GKGCMC	1 cut(s)	1436
BstUI	CGCG	1 cut(s)	3231
BstV2I	GAAGAC	2 cut(s)	257, 1250
BstX2I	RGATCY	2 cut(s)	1049, 2933
BstXI	CCANNNNNNTGG	2 cut(s)	491, 829
BstYI	RGATCY	2 cut(s)	1049, 2933
Bsu36I	CCTNAGG	1 cut(s)	1917
BsuRI	GGCC	7 cut(s)	19, 65, 348, 2399, 2738, 2927, 3169
BtgI	CCRYGG	2 cut(s)	20, 2928
BtgZI	GCGATG	1 cut(s)	2477
BtsCI	GGATG	9 cut(s)	479, 496, 1534, 2848, 2911, 2986, 3043, 3188, 3223
BtsI	GCAGTG	1 cut(s)	1626
BveI	ACCTGC	1 cut(s)	3231
Cac8I	GCNNGC	9 cut(s)	363, 512, 1221, 1360, 1558, 1562, 1908, 2859, 2894
CaiI	CAGNNNCTG	2 cut(s)	1416, 2801
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	1886
Cfr13I	GGNCC	7 cut(s)	4, 262, 346, 678, 974, 1681, 1819
Cfr9I	CCCGGG	1 cut(s)	2218
Csp6I	GTAC	5 cut(s)	336, 840, 1112, 1935, 3094
CviQI	GTAC	5 cut(s)	336, 840, 1112, 1935, 3094
EaeI	YGGCCR	2 cut(s)	17, 2736
Eam1104I	CTCTTC	3 cut(s)	714, 2754, 3205
EarI	CTCTTC	3 cut(s)	714, 2754, 3205
EciI	GGCGGA	1 cut(s)	2855
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	4 cut(s)	822, 1773, 2928, 3255
Eco147I	AGGCCT	2 cut(s)	65, 2399
Eco24I	GRGCYC	2 cut(s)	609, 2641
Eco31I	GGTCTC	1 cut(s)	2771
Eco32I	GATATC	3 cut(s)	1642, 1807, 2312
Eco47I	GGWCC	6 cut(s)	4, 262, 678, 974, 1681, 1819
Eco47III	AGCGCT	1 cut(s)	1885
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	9 cut(s)	426, 489, 551, 1265, 1356, 1410, 1890, 2373, 2544
Eco72I	CACGTG	1 cut(s)	1816
Eco81I	CCTNAGG	1 cut(s)	1917
Eco88I	CYCGRG	1 cut(s)	2218
EcoICRI	GAGCTC	1 cut(s)	607
EcoO109I	RGGNCCY	3 cut(s)	346, 678, 1681
EcoRI	GAATTC	3 cut(s)	1136, 1444, 2810
EcoRII	CCWGG	6 cut(s)	339, 970, 1083, 1699, 1821, 2640
EcoRV	GATATC	3 cut(s)	1642, 1807, 2312
EcoT14I	CCWWGG	4 cut(s)	822, 1773, 2928, 3255
EcoT22I	ATGCAT	2 cut(s)	235, 2483
EcoT38I	GRGCYC	2 cut(s)	609, 2641
ErhI	CCWWGG	4 cut(s)	822, 1773, 2928, 3255
FalI	AAGNNNNNCTT	4 cut(s)	1263, 1295, 2442, 2474
FaqI	GGGAC	2 cut(s)	1066, 1694
FauI	CCCGC	1 cut(s)	3061
FauNDI	CATATG	4 cut(s)	214, 235, 894, 1895
FblI	GTMKAC	3 cut(s)	83, 2328, 2501
FokI	GGATG	9 cut(s)	466, 503, 1541, 2855, 2898, 2993, 3050, 3175, 3210
FriOI	GRGCYC	2 cut(s)	609, 2641
FspBI	CTAG	6 cut(s)	923, 1068, 1157, 3141, 3180, 3274
GlaI	GCGC	1 cut(s)	1885
GsuI	CTGGAG	2 cut(s)	1559, 1722
HaeII	RGCGCY	1 cut(s)	1887
HaeIII	GGCC	7 cut(s)	19, 65, 348, 2399, 2738, 2927, 3169
HapII	CCGG	3 cut(s)	2219, 3192, 3215
HhaI	GCGC	1 cut(s)	1886
Hin6I	GCGC	1 cut(s)	1884
HinP1I	GCGC	1 cut(s)	1884
HincII	GTYRAC	2 cut(s)	1295, 2329
HindII	GTYRAC	2 cut(s)	1295, 2329
HindIII	AAGCTT	1 cut(s)	2855
HpaII	CCGG	3 cut(s)	2219, 3192, 3215
HphI	GGTGA	7 cut(s)	238, 562, 1099, 1741, 2965, 2975, 3072
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	8 cut(s)	55, 100, 202, 526, 1074, 1120, 1331, 2960
HpyCH4III	ACNGT	4 cut(s)	1152, 1249, 1855, 1862
HpyCH4IV	ACGT	5 cut(s)	254, 1204, 1815, 2060, 2504
HpyF10VI	GCNNNNNNNGC	9 cut(s)	371, 380, 662, 878, 986, 1835, 2795, 2846, 3237
HpySE526I	ACGT	5 cut(s)	254, 1204, 1815, 2060, 2504
HspAI	GCGC	1 cut(s)	1884
LguI	GCTCTTC	1 cut(s)	3205
LmnI	GCTCC	6 cut(s)	148, 826, 1230, 1703, 1740, 2698
MaeI	CTAG	6 cut(s)	923, 1068, 1157, 3141, 3180, 3274
MaeII	ACGT	5 cut(s)	254, 1204, 1815, 2060, 2504
MbiI	CCGCTC	2 cut(s)	691, 3068
MflI	RGATCY	2 cut(s)	1049, 2933
MhlI	GDGCHC	5 cut(s)	499, 609, 1436, 1758, 2641
MlsI	TGGCCA	1 cut(s)	2738
MluNI	TGGCCA	1 cut(s)	2738
MmeI	TCCRAC	1 cut(s)	1331
Mox20I	TGGCCA	1 cut(s)	2738
Mph1103I	ATGCAT	2 cut(s)	235, 2483
MroXI	GAANNNNTTC	2 cut(s)	1136, 1875
MscI	TGGCCA	1 cut(s)	2738
MseI	TTAA	8 cut(s)	425, 1043, 1059, 1584, 1791, 2081, 2138, 2202
MslI	CAYNNNNRTG	4 cut(s)	165, 489, 860, 2727
Msp20I	TGGCCA	1 cut(s)	2738
MspA1I	CMGCKG	1 cut(s)	2801
MspCI	CTTAAG	1 cut(s)	2137
MspI	CCGG	3 cut(s)	2219, 3192, 3215
MspR9I	CCNGG	8 cut(s)	341, 972, 1085, 1701, 1823, 2219, 2220, 2642
Mva1269I	GAATGC	3 cut(s)	235, 1360, 1362
MvaI	CCWGG	6 cut(s)	341, 972, 1085, 1701, 1823, 2642
MvnI	CGCG	1 cut(s)	3231
MwoI	GCNNNNNNNGC	9 cut(s)	371, 380, 662, 878, 986, 1835, 2795, 2846, 3237
NciI	CCSGG	2 cut(s)	2219, 2220
NcoI	CCATGG	1 cut(s)	2928
NdeI	CATATG	4 cut(s)	214, 235, 894, 1895
NlaIV	GGNNCC	3 cut(s)	1306, 1342, 1682
NmeAIII	GCCGAG	2 cut(s)	2815, 2868
NmuCI	GTSAC	5 cut(s)	587, 726, 1087, 1624, 3078
NsiI	ATGCAT	2 cut(s)	235, 2483
NspI	RCATGY	4 cut(s)	365, 514, 703, 2500
PaeI	GCATGC	2 cut(s)	365, 514
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	2 cut(s)	65, 2399
PciI	ACATGT	1 cut(s)	2496
PciSI	GCTCTTC	1 cut(s)	3205
PctI	GAATGC	3 cut(s)	235, 1360, 1362
PdmI	GAANNNNTTC	2 cut(s)	1136, 1875
PfeI	GAWTC	9 cut(s)	220, 440, 1519, 1746, 2297, 2612, 2630, 2719, 3234
PfoI	TCCNGGA	2 cut(s)	1699, 1821
PmaCI	CACGTG	1 cut(s)	1816
PmlI	CACGTG	1 cut(s)	1816
Ppu21I	YACGTR	1 cut(s)	1816
PpuMI	RGGWCCY	2 cut(s)	678, 1681
PscI	ACATGT	1 cut(s)	2496
Psp124BI	GAGCTC	1 cut(s)	609
Psp5II	RGGWCCY	2 cut(s)	678, 1681
Psp6I	CCWGG	6 cut(s)	339, 970, 1083, 1699, 1821, 2640
PspCI	CACGTG	1 cut(s)	1816
PspGI	CCWGG	6 cut(s)	339, 970, 1083, 1699, 1821, 2640
PspN4I	GGNNCC	3 cut(s)	1306, 1342, 1682
PspPI	GGNCC	7 cut(s)	4, 262, 346, 678, 974, 1681, 1819
PspPPI	RGGWCCY	2 cut(s)	678, 1681
PsrI	GAACNNNNNNTAC	2 cut(s)	2649, 2681
PstI	CTGCAG	2 cut(s)	874, 1845
PstNI	CAGNNNCTG	2 cut(s)	1416, 2801
PsuI	RGATCY	2 cut(s)	1049, 2933
PvuII	CAGCTG	1 cut(s)	2801
RsaI	GTAC	5 cut(s)	337, 841, 1113, 1936, 3095
RsaNI	GTAC	5 cut(s)	336, 840, 1112, 1935, 3094
RseI	CAYNNNNRTG	4 cut(s)	165, 489, 860, 2727
SacI	GAGCTC	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	2327
SapI	GCTCTTC	1 cut(s)	3205
SaqAI	TTAA	8 cut(s)	425, 1043, 1059, 1584, 1791, 2081, 2138, 2202
Sau96I	GGNCC	7 cut(s)	4, 262, 346, 678, 974, 1681, 1819
ScrFI	CCNGG	8 cut(s)	341, 972, 1085, 1701, 1823, 2219, 2220, 2642
SduI	GDGCHC	5 cut(s)	499, 609, 1436, 1758, 2641
SfcI	CTRYAG	2 cut(s)	870, 1841
SinI	GGWCC	6 cut(s)	4, 262, 678, 974, 1681, 1819
SmaI	CCCGGG	1 cut(s)	2220
SmiMI	CAYNNNNRTG	4 cut(s)	165, 489, 860, 2727
SmlI	CTYRAG	5 cut(s)	767, 1345, 2137, 2195, 2581
SmoI	CTYRAG	5 cut(s)	767, 1345, 2137, 2195, 2581
SphI	GCATGC	2 cut(s)	365, 514
SseBI	AGGCCT	2 cut(s)	65, 2399
SsiI	CCGC	7 cut(s)	71, 691, 958, 2840, 3068, 3195, 3231
SspMI	CTAG	6 cut(s)	923, 1068, 1157, 3141, 3180, 3274
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	2 cut(s)	65, 2399
StyD4I	CCNGG	8 cut(s)	339, 970, 1083, 1699, 1821, 2217, 2218, 2640
StyI	CCWWGG	4 cut(s)	822, 1773, 2928, 3255
TaaI	ACNGT	4 cut(s)	1152, 1249, 1855, 1862
TaiI	ACGT	5 cut(s)	257, 1207, 1818, 2063, 2507
TaqI	TCGA	6 cut(s)	475, 609, 1039, 1490, 1800, 2328
TaqII	GACCGA	1 cut(s)	21
TatI	WGTACW	3 cut(s)	1111, 1934, 3093
TauI	GCSGC	1 cut(s)	3198
TfiI	GAWTC	9 cut(s)	220, 440, 1519, 1746, 2297, 2612, 2630, 2719, 3234
Tru1I	TTAA	8 cut(s)	425, 1043, 1059, 1584, 1791, 2081, 2138, 2202
Tru9I	TTAA	8 cut(s)	425, 1043, 1059, 1584, 1791, 2081, 2138, 2202
TseFI	GTSAC	5 cut(s)	587, 726, 1087, 1624, 3078
Tsp45I	GTSAC	5 cut(s)	587, 726, 1087, 1624, 3078
TspGWI	ACGGA	1 cut(s)	25
TspMI	CCCGGG	1 cut(s)	2218
Vha464I	CTTAAG	1 cut(s)	2137
VpaK11BI	GGWCC	6 cut(s)	4, 262, 678, 974, 1681, 1819
XceI	RCATGY	4 cut(s)	365, 514, 703, 2500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	944
XmaI	CCCGGG	1 cut(s)	2218
XmiI	GTMKAC	3 cut(s)	83, 2328, 2501
XmnI	GAANNNNTTC	2 cut(s)	1136, 1875
XspI	CTAG	6 cut(s)	923, 1068, 1157, 3141, 3180, 3274
Zsp2I	ATGCAT	2 cut(s)	235, 2483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.