Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007254

Physical Location & Seq

Genomic Coordinates Forward (+)

62662147 .. 62667688

Gene Structure 5542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3336 bp

ATGGACCGACGGAGTTGGCCGTGGAAGAAAAAATCATCATCAGACAAAGCTGCAACCGAGAAGGCCTTAGCAGTAGCAGAGTCTGTGCCGACGCCTCAGGCAGAGAAAGATAACTACAAGAAACCAAATTATGTTCAACTTTCGGTGGAGCAATATTCGCATCTCACTGGTTTGGAGGATCAAGTGAAGAATTATGAGAGTCAAGTGAAGAATTATGAGAATCAAGTGAATGCATATGAGGATCAAGTGAAGACGTACGAGGACCAATTTCAGACATTGGAGGATCAAATTACAGATTTGAACGAACAGCTCTCCACAGCCCACTCAGAGATCAGTACCCAGGAGGGCCTCGTTAAACAGCATGCTAAAGTTGCCGAAGAAGCTGTGTCAGGTTGGGAAAAGGCTGAAGCCGAAGCTCTTGCGTTAAAAACTCATTTAGAATCTGTGACACTTTTGAAGCTGACTGCTGAAGATCGGGCATCCCATTTAGATGGTGCTCTCAAAGAGTGCATGCGACAGATTAGAAATCTTAAGGAAGATCATGAACAGAAATTGCAAGAAGTTGTTTTCACCAAAACGAAGCAATGTGACAAAATCAAGCATGAGCTCGAAACAAGGATAGGTAATTTAGACCAAGAGCTCCTAAGGTCTGCTGCTGAAAATGCTGCTATTTCAAGGTCTTTACAAGAGCGGTCAAACATGCTATACAAGATCAATGAAGAAAAGTCACAAGCTGAGGCAGAAATTGAGCGTTTCAAGAGCAACATTGAATCTTGTGAAAGGGAAATAAACTCTCTGAAATATGAACTTCATATTGCTTCCAAGGAGCTGGAAATTCGTACAGAGGAAAAGAACATGAGCGTGAGGTCTGCAGATGCGGCCAACAAGCAGCATATGGAGGGTGTGAAAAAAATAACTAAGCTAGAAGCAGAGTGCCAAAGACTACGTGGTCTTGTGCGGAAGAAGTTGCCTGGTCCTGCTGCACTTGCCCAAATGAAGCTTGAGGTTGAGAGTTTAGGCCGAGATTATGGAGAAACTCGGTTGAAGAGATCTCCTGTTAAGGCTTCTAGTCCACATATGTCCCAGGTGACTGAGTTTTCCCTTGACAATGTACAGAAGTTTCAGAAGGAGAATGAATTTCTGACAGAACGGTTATTAGCAATGGAAGAAGAAACAAAAATGCTTAAAGAAGCTTTGTCAAAACGTAACAGCGAATTGCAGGTTTCTAGGAGTATTTGTGCGAAGACAGTCAGCAAGCTTCAAGCATTAGAAGCACAGCTTCAAATCAGTGGTCAACAGAAAGGTTCCCCAACATCTGTTGTTCACATCACCACTGAAGGTTCCTTGAGTCAGAATGAAAGCAATCCACCAAGTTTCACCTCCATGTCTGAAGATGGAAATGATGATGACAGAAGCTGTGCTGAGTCTTGGGGCACAACATTGAACTCTGATGTCTCACACATCAAGAAGGAGAAGAACAATGAAAAGTCGAGCAAAGCTGAAAATCAAAATCATTTGAATCTTATGGATGACTTTCTGGAGATGGAGAAGTTGGCTTGCTTGCCTAATGACTCAAATGGAGATCTCTCTGTTTCAGATAGTCCAAACAATAAGACATCTGAAATAGAGACCAATGACACATCAGGAGAAGTCACTGCCGCAAAAGATATACAATCTGAGCAGCAGCATGATTCAAGTCCACTGGCAAAGCATCAAGCATCTTCCAATGGGAACCTGACAGTGCTCAGTCCTGGAGCTAATGAAAACAAGCTGCCTCTGGTGAAGCTCCGATCAAGAATCTCGGTGCTGTTAGAGTTATTATCCAAGGACACTGATTTTGGTAAAGTTATTGAGGATATCAAGCATGTGGTTCAGGAAGCACAAGATACTCTGTACCCTCACACTGTAAACTGTGTTTCTGAAGAAATTCACAGCTCTGATGCCATATGTGATAGGCAGGCACACCCTGAGGGCTCTGTTCTAACTACAGAAAAGGAAATCACAGCCAAAGAGACCATGACTGCAATAACTGAAGAACTGGCATCTGCCATATCCTTGATCCATGACTTTGTGCTGCTCTTAGGAAAAAAAATGGTGGGAGTGCATGACACATTTCCTGATGGCAATGAATTAAGTCAGAAGATTGAAGAATTTTCTGGCACATATAGTAAAGTTATTCATGGGAACTTGAGTTTGGTTGATTTGGTTCTTGACCTTTCTCATGTGTTAGCAAATGCCAGTGAACTCAAGTTTAATGTTATAGGTTTCCAGGGTGTTGAAGCAGGAAGGAATAGTCCTGATTGTATTGACAAGGTAGCCTTACCAGAGAATAAGGTAGTTGAGAAGGATTCATCAGAAAGATATCAAAATCATTGTGCCGACATTTCTAATCATTCTAACCCTGAAGTTCCTGATGATGGAAATCTAGTCTCCAGCTTTGGGTCAAATGCCACCCCATGCAAAATCTCAGTGGAGGAGTTTGAGCAATTGAAATCAGAGAAAGATAACCTGTCTATAGATTTGGCAAGATGCGCGGAAAATCTGGAGATGACTACGTCCAAGTTACAGGAAACCGAGCAGCTTCTTGCAGAAGCTAAAACACAATTTGCTTCTGCTCAAAATTCAAACAGCTTAAATGAGACGCAGCTGAAATGTATGGCAGAATCATACAGGTCACTGGAATCACGAGCCCATGAGTTAGAAACTGAACTGAAGCTACTACAAGTCAGAACTGAAACTCTGGAAACGGAGCTGCAAGAAGAACAGAGGAATCATCAAGATGCTTTGGCTAGATGCACAGAACTTCAAGAAGAGTTGAAAAGGCAGGAGACCTTAGCAGCCGAGACAGCAGCCGAGACGGAATTCAAGACCAAACAGGACATGGAATTGGCGGATGCAGCAGAGAAGCTTGCCGAGTGTCAAGAAACCATATTTCTTCTCGGCAAGCAGTTGAAATCTTTGCATCCTCAACCAGAGACCATGGGATCTCCATACAGTGAGAGGAGTCAAAAGTTTGAAGGGTTCACTGAGGATGAACCCACCACTACCAAAGCCATGAATTTGCATGACTCGGATCAAGCTGAGATTGAAGGTGCTGCTTCTCCCAATGTTCTTAGAGCGGGTGGCGAGTCACCCATCTATCTGTACAATGCCCCATGCAGCCCATCTGATACAGATGGGAACAATCTCTTGAAATCTCCTGGCAATGCCAAAACCTCAAAACACAGGCCCACAAAGTCGAGTTCCTCATCTGGCGGCTCTTCTAACCCAACACCGGAGAAACATCCACGCGGATTCAGCAGGTTTTTCTCCTCCAAAGGAAAGAATGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015631 GO:0016020 GO:0016043 GO:0022607 GO:0030154 GO:0031109 GO:0032502 GO:0032989 GO:0034622 GO:0043933 GO:0044085 GO:0044464 GO:0046785 GO:0048468 GO:0048856 GO:0048869 GO:0051258 GO:0065003 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

1111

Amino Acids

123.74

Weight (kDa)

5.1

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	50 - 205	3e-07	Coiled-coil domain-containing protein 39
FPP	PF05911	115 - 993	0.0	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835
fragaria_vesca	FvH4_2g38730 FvH4_2g38730 FvH4_2g38730
malus_domestica	MD08G1015000.v1.1
prunus_persica	Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1
pyrus_communis	pycom08g01340 pycom15g01230
rosa_chinensis	RchiOBHm_Chr6g0302571
rosa_laevigata	RLG00000011160
rosa_multiflora	Rmu_sc0005455.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165600
rosa_rugosa	Rorug06G0315100
rosa_samantha	Rh6AG428500 Rh6BG474100 Rh6CG440700 Rh6DG427500
rosa_wichuraiana	Rw6G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	948
Acc36I	ACCTGC	2 cut(s)	1210, 3291
AccBSI	CCGCTC	2 cut(s)	691, 3119
AccII	CGCG	2 cut(s)	2534, 3291
AciI	CCGC	9 cut(s)	691, 878, 958, 1659, 2534, 2891, 3119, 3255, 3291
AclWI	GGATC	6 cut(s)	186, 249, 291, 2053, 2992, 3081
AcoI	YGGCCR	2 cut(s)	17, 879
AcsI	RAATTY	7 cut(s)	834, 1136, 1926, 2150, 2620, 2861, 3058
AcuI	CTGAAG	8 cut(s)	426, 489, 1356, 1410, 1941, 2052, 2424, 2732
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	6 cut(s)	257, 337, 841, 1113, 1895, 3146
AfiI	CCNNNNNNNGG	3 cut(s)	2417, 2439, 3274
AflII	CTTAAG	1 cut(s)	530
AjnI	CCWGG	6 cut(s)	339, 970, 1083, 1750, 2268, 3199
AjuI	GAANNNNNNNTTGG	2 cut(s)	2177, 2209
Alw21I	GWGCWC	4 cut(s)	499, 609, 642, 1746
Alw26I	GTCTC	9 cut(s)	1459, 1622, 2006, 2434, 2633, 2822, 2837, 2849, 2969
AlwI	GGATC	6 cut(s)	186, 249, 291, 2053, 2992, 3081
AlwNI	CAGNNNCTG	2 cut(s)	83, 1416
AoxI	GGCC	6 cut(s)	17, 63, 346, 879, 1018, 3227
ApoI	RAATTY	7 cut(s)	834, 1136, 1926, 2150, 2620, 2861, 3058
ArsI	GACNNNNNNTTYG	4 cut(s)	1276, 1308, 1820, 1852
Asp700I	GAANNNNTTC	1 cut(s)	1926
AspLEI	GCGC	1 cut(s)	2534
AspS9I	GGNCC	5 cut(s)	4, 262, 346, 974, 3228
AsuHPI	GGTGA	6 cut(s)	562, 1099, 1321, 1369, 1792, 3123
AvaII	GGWCC	3 cut(s)	4, 262, 974
AxyI	CCTNAGG	3 cut(s)	96, 644, 1968
BaeGI	GKGCMC	1 cut(s)	1436
BanII	GRGCYC	4 cut(s)	609, 642, 1976, 2692
BauI	CACGAG	1 cut(s)	2685
BbsI	GAAGAC	2 cut(s)	257, 1250
Bbv12I	GWGCWC	4 cut(s)	499, 609, 642, 1746
BbvCI	CCTCAGC	1 cut(s)	735
BccI	CCATC	8 cut(s)	485, 1388, 1537, 2114, 2411, 3143, 3170, 3172
BceAI	ACGGC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
BcoDI	GTCTC	9 cut(s)	1459, 1622, 2006, 2434, 2633, 2822, 2837, 2849, 2969
BfaI	CTAG	6 cut(s)	923, 1068, 1227, 2426, 2790, 3334
BfmI	CTRYAG	3 cut(s)	870, 1986, 2514
BfrI	CTTAAG	1 cut(s)	530
BfuAI	ACCTGC	2 cut(s)	1210, 3291
BglII	AGATCT	2 cut(s)	1049, 1582
Bme1390I	CCNGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
Bme18I	GGWCC	3 cut(s)	4, 262, 974
BmgT120I	GGNCC	5 cut(s)	4, 262, 346, 974, 3228
BmiI	GGNNCC	3 cut(s)	1306, 1342, 1733
BmrFI	CCNGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
BpiI	GAAGAC	2 cut(s)	257, 1250
BpmI	CTGGAG	4 cut(s)	1559, 1773, 2416, 2564
Bpu10I	CCTNAGC	3 cut(s)	67, 735, 2833
BpuEI	CTTGAG	4 cut(s)	1022, 1366, 2209, 2231
BsaAI	YACGTR	1 cut(s)	947
BsaBI	GATNNNNATC	1 cut(s)	2421
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	4 cut(s)	1622, 2006, 2822, 2969
BsaJI	CCNNGG	7 cut(s)	20, 339, 822, 1083, 1824, 2269, 2979
BsaWI	WCCGGW	1 cut(s)	3274
BsaXI	ACNNNNNCTCC	2 cut(s)	1222, 1252
Bsc4I	CCNNNNNNNGG	3 cut(s)	2417, 2439, 3274
Bse1I	ACTGG	5 cut(s)	172, 1707, 2043, 2238, 2682
Bse21I	CCTNAGG	3 cut(s)	96, 644, 1968
Bse3DI	GCAATG	4 cut(s)	590, 1167, 2131, 3211
Bse8I	GATNNNNATC	1 cut(s)	2421
BseBI	CCWGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
BseDI	CCNNGG	7 cut(s)	20, 339, 822, 1083, 1824, 2269, 2979
BseGI	GGATG	6 cut(s)	479, 1534, 2899, 2962, 3037, 3283
BseJI	GATNNNNATC	1 cut(s)	2421
BseLI	CCNNNNNNNGG	3 cut(s)	2417, 2439, 3274
BseMI	GCAATG	4 cut(s)	590, 1167, 2131, 3211
BseNI	ACTGG	5 cut(s)	172, 1707, 2043, 2238, 2682
BseRI	GAGGAG	3 cut(s)	2489, 3016, 3301
BseSI	GKGCMC	1 cut(s)	1436
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	2 cut(s)	2534, 3291
BshFI	GGCC	6 cut(s)	19, 65, 348, 881, 1020, 3229
BsiHKAI	GWGCWC	4 cut(s)	499, 609, 642, 1746
BsiSI	CCGG	1 cut(s)	3275
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	3 cut(s)	2417, 2439, 3274
BsmAI	GTCTC	9 cut(s)	1459, 1622, 2006, 2434, 2633, 2822, 2837, 2849, 2969
BsmBI	CGTCTC	2 cut(s)	2633, 2849
BsmFI	GGGAC	1 cut(s)	1066
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	6 cut(s)	19, 65, 348, 881, 1020, 3229
Bso31I	GGTCTC	4 cut(s)	1622, 2006, 2822, 2969
Bsp1286I	GDGCHC	7 cut(s)	499, 609, 642, 1436, 1746, 1976, 2692
Bsp1407I	TGTACA	2 cut(s)	1111, 3144
Bsp19I	CCATGG	1 cut(s)	2979
BspACI	CCGC	9 cut(s)	691, 878, 958, 1659, 2534, 2891, 3119, 3255, 3291
BspANI	GGCC	6 cut(s)	19, 65, 348, 881, 1020, 3229
BspFNI	CGCG	2 cut(s)	2534, 3291
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	1306, 1342, 1733
BspMAI	CTGCAG	1 cut(s)	874
BspMI	ACCTGC	2 cut(s)	1210, 3291
BspPI	GGATC	6 cut(s)	186, 249, 291, 2053, 2992, 3081
BspQI	GCTCTTC	1 cut(s)	3265
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	4 cut(s)	1622, 2006, 2822, 2969
BsrBI	CCGCTC	2 cut(s)	691, 3119
BsrDI	GCAATG	4 cut(s)	590, 1167, 2131, 3211
BsrGI	TGTACA	2 cut(s)	1111, 3144
BsrI	ACTGG	5 cut(s)	172, 1707, 2043, 2238, 2682
BssECI	CCNNGG	7 cut(s)	20, 339, 822, 1083, 1824, 2269, 2979
BssNI	GRCGYC	1 cut(s)	92
BssSI	CACGAG	1 cut(s)	2685
BssT1I	CCWWGG	3 cut(s)	822, 1824, 2979
Bst2BI	CACGAG	1 cut(s)	2685
Bst2UI	CCWGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
Bst4CI	ACNGT	6 cut(s)	1152, 1249, 1741, 1906, 1913, 2996
Bst6I	CTCTTC	3 cut(s)	1040, 2805, 3265
BstACI	GRCGYC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	530
BstAUI	TGTACA	2 cut(s)	1111, 3144
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	8 cut(s)	363, 512, 1256, 1558, 1562, 1959, 2910, 2945
BstDSI	CCRYGG	2 cut(s)	20, 2979
BstF5I	GGATG	6 cut(s)	479, 1534, 2899, 2962, 3037, 3283
BstFNI	CGCG	2 cut(s)	2534, 3291
BstHHI	GCGC	1 cut(s)	2534
BstMAI	GTCTC	9 cut(s)	1459, 1622, 2006, 2434, 2633, 2822, 2837, 2849, 2969
BstNI	CCWGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
BstNSI	RCATGY	4 cut(s)	365, 514, 703, 1868
BstSCI	CCNGG	6 cut(s)	339, 970, 1083, 1750, 2268, 3199
BstSFI	CTRYAG	3 cut(s)	870, 1986, 2514
BstSLI	GKGCMC	1 cut(s)	1436
BstUI	CGCG	2 cut(s)	2534, 3291
BstV2I	GAAGAC	2 cut(s)	257, 1250
BstX2I	RGATCY	3 cut(s)	1049, 1582, 2984
BstXI	CCANNNNNNTGG	2 cut(s)	491, 829
BstYI	RGATCY	3 cut(s)	1049, 1582, 2984
Bsu36I	CCTNAGG	3 cut(s)	96, 644, 1968
BsuRI	GGCC	6 cut(s)	19, 65, 348, 881, 1020, 3229
BtgI	CCRYGG	2 cut(s)	20, 2979
BtsCI	GGATG	6 cut(s)	479, 1534, 2899, 2962, 3037, 3283
BtsI	GCAGTG	1 cut(s)	1653
BveI	ACCTGC	2 cut(s)	1210, 3291
Cac8I	GCNNGC	8 cut(s)	363, 512, 1256, 1558, 1562, 1959, 2910, 2945
CaiI	CAGNNNCTG	2 cut(s)	83, 1416
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	2534
Cfr13I	GGNCC	5 cut(s)	4, 262, 346, 974, 3228
CseI	GACGC	2 cut(s)	100, 2650
Csp6I	GTAC	6 cut(s)	256, 336, 840, 1112, 1894, 3145
CviQI	GTAC	6 cut(s)	256, 336, 840, 1112, 1894, 3145
DrdI	GACNNNNNNGTC	1 cut(s)	948
DseDI	GACNNNNNNGTC	1 cut(s)	948
EaeI	YGGCCR	2 cut(s)	17, 879
Eam1104I	CTCTTC	3 cut(s)	1040, 2805, 3265
EarI	CTCTTC	3 cut(s)	1040, 2805, 3265
EciI	GGCGGA	1 cut(s)	2906
Ecl136II	GAGCTC	2 cut(s)	607, 640
Eco130I	CCWWGG	3 cut(s)	822, 1824, 2979
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	4 cut(s)	609, 642, 1976, 2692
Eco31I	GGTCTC	4 cut(s)	1622, 2006, 2822, 2969
Eco32I	GATATC	2 cut(s)	1858, 2363
Eco47I	GGWCC	3 cut(s)	4, 262, 974
Eco53kI	GAGCTC	2 cut(s)	607, 640
Eco57I	CTGAAG	8 cut(s)	426, 489, 1356, 1410, 1941, 2052, 2424, 2732
Eco81I	CCTNAGG	3 cut(s)	96, 644, 1968
EcoICRI	GAGCTC	2 cut(s)	607, 640
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	2861
EcoRII	CCWGG	6 cut(s)	339, 970, 1083, 1750, 2268, 3199
EcoRV	GATATC	2 cut(s)	1858, 2363
EcoT14I	CCWWGG	3 cut(s)	822, 1824, 2979
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	4 cut(s)	609, 642, 1976, 2692
ErhI	CCWWGG	3 cut(s)	822, 1824, 2979
Esp3I	CGTCTC	2 cut(s)	2633, 2849
FalI	AAGNNNNNCTT	4 cut(s)	1263, 1295, 2303, 2335
FaqI	GGGAC	1 cut(s)	1066
FauI	CCCGC	1 cut(s)	3112
FauNDI	CATATG	4 cut(s)	235, 894, 1077, 1946
FokI	GGATG	6 cut(s)	466, 1541, 2906, 2949, 3044, 3270
FriOI	GRGCYC	4 cut(s)	609, 642, 1976, 2692
FspBI	CTAG	6 cut(s)	923, 1068, 1227, 2426, 2790, 3334
GlaI	GCGC	1 cut(s)	2533
GsuI	CTGGAG	4 cut(s)	1559, 1773, 2416, 2564
HaeIII	GGCC	6 cut(s)	19, 65, 348, 881, 1020, 3229
HapII	CCGG	1 cut(s)	3275
HgaI	GACGC	2 cut(s)	100, 2650
HhaI	GCGC	1 cut(s)	2534
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	2532
HinP1I	GCGC	1 cut(s)	2532
HincII	GTYRAC	1 cut(s)	1295
HindII	GTYRAC	1 cut(s)	1295
HindIII	AAGCTT	4 cut(s)	998, 1191, 1256, 2906
HpaII	CCGG	1 cut(s)	3275
HphI	GGTGA	6 cut(s)	562, 1099, 1321, 1369, 1792, 3123
Hpy166II	GTNNAC	7 cut(s)	1073, 1295, 1324, 1700, 1909, 2243, 3024
Hpy8I	GTNNAC	7 cut(s)	1073, 1295, 1324, 1700, 1909, 2243, 3024
Hpy99I	CGWCG	2 cut(s)	12, 94
HpyAV	CCTTC	8 cut(s)	55, 1120, 1331, 1462, 2280, 2338, 3011, 3083
HpyCH4III	ACNGT	6 cut(s)	1152, 1249, 1741, 1906, 1913, 2996
HpyCH4IV	ACGT	4 cut(s)	254, 946, 1204, 2555
HpySE526I	ACGT	4 cut(s)	254, 946, 1204, 2555
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	1 cut(s)	2532
LguI	GCTCTTC	1 cut(s)	3265
LmnI	GCTCC	6 cut(s)	148, 645, 826, 1754, 1791, 2749
MaeI	CTAG	6 cut(s)	923, 1068, 1227, 2426, 2790, 3334
MaeII	ACGT	4 cut(s)	254, 946, 1204, 2555
MbiI	CCGCTC	2 cut(s)	691, 3119
MfeI	CAATTG	1 cut(s)	2486
MflI	RGATCY	3 cut(s)	1049, 1582, 2984
MhlI	GDGCHC	7 cut(s)	499, 609, 642, 1436, 1746, 1976, 2692
MlyI	GAGTC	8 cut(s)	89, 208, 1357, 1433, 1565, 3013, 3062, 3137
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	1926
MseI	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2132, 2253, 2633
MslI	CAYNNNNRTG	4 cut(s)	489, 860, 1382, 2778
MspA1I	CMGCKG	1 cut(s)	2647
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	3275
MspR9I	CCNGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
MunI	CAATTG	1 cut(s)	2486
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
MvnI	CGCG	2 cut(s)	2534, 3291
NcoI	CCATGG	1 cut(s)	2979
NdeI	CATATG	4 cut(s)	235, 894, 1077, 1946
NlaIV	GGNNCC	3 cut(s)	1306, 1342, 1733
NmeAIII	GCCGAG	5 cut(s)	1046, 2866, 2878, 2919, 2938
NmuCI	GTSAC	7 cut(s)	445, 587, 726, 1087, 1651, 2673, 3129
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	4 cut(s)	365, 514, 703, 1868
PaeI	GCATGC	2 cut(s)	365, 514
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	3265
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	1926
Pfl23II	CGTACG	1 cut(s)	255
PflFI	GACNNNGTC	1 cut(s)	2554
PfoI	TCCNGGA	1 cut(s)	1750
PleI	GAGTC	8 cut(s)	88, 207, 1356, 1432, 1565, 3012, 3062, 3136
PpsI	GAGTC	8 cut(s)	88, 207, 1356, 1432, 1565, 3012, 3062, 3136
Ppu21I	YACGTR	1 cut(s)	947
Psp124BI	GAGCTC	2 cut(s)	609, 642
Psp6I	CCWGG	6 cut(s)	339, 970, 1083, 1750, 2268, 3199
PspGI	CCWGG	6 cut(s)	339, 970, 1083, 1750, 2268, 3199
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	1306, 1342, 1733
PspPI	GGNCC	5 cut(s)	4, 262, 346, 974, 3228
PsrI	GAACNNNNNNTAC	2 cut(s)	2700, 2732
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	2 cut(s)	83, 1416
PsuI	RGATCY	3 cut(s)	1049, 1582, 2984
PsyI	GACNNNGTC	1 cut(s)	2554
PvuII	CAGCTG	1 cut(s)	2647
RsaI	GTAC	6 cut(s)	257, 337, 841, 1113, 1895, 3146
RsaNI	GTAC	6 cut(s)	256, 336, 840, 1112, 1894, 3145
RseI	CAYNNNNRTG	4 cut(s)	489, 860, 1382, 2778
SacI	GAGCTC	2 cut(s)	609, 642
SapI	GCTCTTC	1 cut(s)	3265
SaqAI	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2132, 2253, 2633
Sau96I	GGNCC	5 cut(s)	4, 262, 346, 974, 3228
SchI	GAGTC	8 cut(s)	89, 208, 1357, 1433, 1565, 3013, 3062, 3137
ScrFI	CCNGG	6 cut(s)	341, 972, 1085, 1752, 2270, 3201
SduI	GDGCHC	7 cut(s)	499, 609, 642, 1436, 1746, 1976, 2692
SfcI	CTRYAG	3 cut(s)	870, 1986, 2514
SinI	GGWCC	3 cut(s)	4, 262, 974
SmiMI	CAYNNNNRTG	4 cut(s)	489, 860, 1382, 2778
SmlI	CTYRAG	5 cut(s)	530, 1001, 1345, 2188, 2246
SmoI	CTYRAG	5 cut(s)	530, 1001, 1345, 2188, 2246
SphI	GCATGC	2 cut(s)	365, 514
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	9 cut(s)	691, 878, 958, 1659, 2534, 2891, 3119, 3255, 3291
SspI	AATATT	1 cut(s)	155
SspMI	CTAG	6 cut(s)	923, 1068, 1227, 2426, 2790, 3334
SstI	GAGCTC	2 cut(s)	609, 642
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	6 cut(s)	339, 970, 1083, 1750, 2268, 3199
StyI	CCWWGG	3 cut(s)	822, 1824, 2979
TaaI	ACNGT	6 cut(s)	1152, 1249, 1741, 1906, 1913, 2996
TaiI	ACGT	4 cut(s)	257, 949, 1207, 2558
TaqI	TCGA	3 cut(s)	609, 1490, 3239
TaqII	GACCGA	1 cut(s)	21
TatI	WGTACW	2 cut(s)	1111, 3144
TauI	GCSGC	3 cut(s)	881, 1661, 3258
Tru1I	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2132, 2253, 2633
Tru9I	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2132, 2253, 2633
TseFI	GTSAC	7 cut(s)	445, 587, 726, 1087, 1651, 2673, 3129
Tsp45I	GTSAC	7 cut(s)	445, 587, 726, 1087, 1651, 2673, 3129
TspGWI	ACGGA	3 cut(s)	25, 2762, 2873
Tth111I	GACNNNGTC	1 cut(s)	2554
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	3 cut(s)	4, 262, 974
XapI	RAATTY	7 cut(s)	834, 1136, 1926, 2150, 2620, 2861, 3058
XceI	RCATGY	4 cut(s)	365, 514, 703, 1868
XcmI	CCANNNNNNNNNTGG	2 cut(s)	944, 2878
XmnI	GAANNNNTTC	1 cut(s)	1926
XspI	CTAG	6 cut(s)	923, 1068, 1227, 2426, 2790, 3334
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.