Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007254

Physical Location & Seq

Genomic Coordinates Reverse (-)

1146011 .. 1151417

Gene Structure 5407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1015000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3279 bp

ATGACTCAAACATTACAGTCTAATATGGACCGACGGGGTTGGCCGTGGAAGAAAAAGTCGTCGGACAAGGCGGCAGCGGAGAAAGCCGCCGCCGCAGCGGACTCTCTTGCCAGCCAGGCACAGACTGAGCAAGAGAAGTACAAAAAACCAAATTATGTGCAAATTTCTGTGGAGCAATATTCGCATCTGACCGGTTTGGAGGAGCAAGTGAAGAATTACGAGGATCAAGTGAAGAATTATGAGGATCAAGTTCAGACATTGGAGGACGAAATTAAGGATTTGAATGATAAGCTCACTGAGGCCGATTCCGAGATGACTACCAAAGAGAGCTTGGTTAAACAGCATGCTAAAGTTGCCGAAGAAGCCGTCTCAGGTTGGGAAAAGGCTGAAGCGGAGGCTCTCGCATTGAAAACTCATCTAGAATCTGTGACTCTTTTGAAGCTCACTGCTGAAGACCGGGCCGCACATTTGGATGGTGCTCTTAAAGAGTGCATGCGACAGATACGTAATCTTAAGGAAGAACATGAGCAGAAAATACAAGACGTTGTTTTAACCAAAAACACACAAGTTGACAAAATCAAGCATGAGCTCGAAACGAAGATAGCTAATTTAGATCAAGAACTCCTAAGGTCTGCTGCTGAAAATGCCGCTATTTCCAGGTCCTTACAAGAGCGTTCGAATATGCTATTCAAGATAAGTGAAGAGAAGTCACAAGCTGAGGCAGAAATTGAGCATTTTAAGAGCAACGTTGAGTCTTGTGAAAGGGAAATACATTCTCTGAAGTACGAACTCCATCTAGCCGCCAAGGAGCTAGAAATTCGGAATGAGGAAAAGAACATGAGTATGAGGTCTGCCGAAGCAGCCAACAAGCAGCATATGGAAGGTGTTAAAAAAATAACTAAGCTTGAAGCAGAGTGCCAAAGATTACGTGGTCTTGTGCGGAAGAAGTTACCTGGTCCTGCTGCACTTGCACAAATGAAGCTAGAGGTTGAAAGTTTAGGCCGAGATTATGGAGAAACTCGATTAAGGAAGTCTCCTGTTAAGCTTTCTAGTCCACAAATGTCCCCACACATGTCCCCAGCAACTGAGTTTTCTCTTGATAATGTACAGAAGTTTCAAAAGGAGAATGAATTTCTCACAGAACGTTTATTAGCAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCAAAGCGTAACAGCGATGTGCTGGATTCAAGGAGTATGTATGCTCAGGCAGCCAGCAAGCTTCAAACATTAGAAGCACAACTTCAAATCAACAATCTACAGAAAGGCTCGCCAAAATCTGTTGTTCAGATCACCCCTGGAGGTTCGTCAAGCCAGGACGCAAGCAATCCACCAAGCTTGACCTCCTTGTCTGAAGATAGTAATGATGACACCAGAAGCTATGCTGAGTCTTGGGCCACAACATTGGAGAAGAACAATGCAAAGTCAAACAAATCTGAAAGTCAAAACGACTTGAATCTTATGGATGACTTTCTGGAGATGGAGAAGTTGGCTTGTTTGCCAAATGACTCGAATGGAGCCATCTCTAGTAAGACATCCGAAAGAGAGAGTCATGATGCTATGGGAGATGTCACTGCCGCCAAAGATGTCCAATCTGAGCAGCAGCATGATTCAAGTCCCTTGGTAGGTGACCAAGCATCTTCTAATGCGGAATTGTCAGGATCCAGTCCTGAATCTGATGAAAGCCAGCTGCCACTGGTGAAACTCCGTTCGAAAATCTGTATGCTATTGGAATTCTTATCTAAGGAAACCGATTTTGGGAAAGTTGTTGAGGATATCAAACTTGTAGTCCAGGAAGCACAAGATACTCTGCACCCGCACACTGTAAAGTGTGTTTCTGAGGAAGTTCACAGCTCTGATGCCCTATGTGACCGGCAGGCAAATCCTGATGATTCTGGTTTAACCACAGAAAAGGAAATCACTTTGTCCCAGCCAGCCACAGAGACCATGAAAGTAATAAGCGAAGATCTGGCATCTGCCATTTCTTTGATCCATGACTTTGTGCTGTCCCTGGGCAAAGAAGTGATGGAAGTGCATGGCACGTTTCCGGATGGCGATGGATTGACCCCAAAGATTGAAGAATTCTCTGGCACATTTAGTAAAGTTATTCATGGAAACTTAAGTTTGGGTGAATTTGTTCTTGGCCTTTCGCATGTTTTAGCAAACGCCAGTGAACTCAAATTCAACGTTCTAGGCTTCAAGGGTGTTGAATCAGAAACTAACAGTCCTGATTGCATTGACAAGGTAGCATTACCAGAGAATAAGGTAGTTGAGAAGGATTCATCACAAAGATTTCAAAATGTTTGTGTCCACATTCCTAATCATACGAACCCTGAAGTTCCTGACGATGGAAATCTTGTCTCTGGCTATGAACCAAATGCCGAGCCATGCAAAATCTCGCTGGAGGAGTTTGAACAACTGAAATCAGAGAAAGATAACCTGGCAACGGATTTGGCAAGATGTTCTGAAACTCTAGAGATTACAAAGTCTCAATTACAGGAAACTGAGCAGCTTCTTGCTGAAGCTAAATCACAATTTGCTTCTGCTAAGAACTCAAATAGCTTAGCCGAGACGCAGCTGAAATGTATGGCAGAATCATACAGGTCACTTGAGTCACGAGCTCAGGAGTTAGAAACTGAACTGAAGCTTCTGCAAGTCAGAAACGAAACTCTGGAAAGCGAGCTACAAGAAGAGAAAAGGAACCATCAAGATGCTTTGGCCAGGTGCACGGAACTTCAAGAGCAGTTGAAAAGCAATGAGCGTTTGGAAGCTGAGACTGAATTCAAGACAAAACAGGACAGGGAGTTGGCAGATGCAGCGGAGAAGCTTGCCGAGTGTCAAGAAACCATATTTCTTCTCGGCAAGCAGTTGAAAGCATTGCACCCTCAAACAGAGGTCGTGGGATCTCCATACAGTGGGAGGAGTCAAAAGGGTGAAGGTTTCACCGAGGATGAACCCACTACCAGTGCCATGAACTTGCAAGACTCAGAAAAAGGTGAGACGGAAGGCGCTTCTTCTGTCAATGTAAACAGAGTGGTGGGCAGCGAGTCTCCCATCAACCTGCATAACTCTCCATGCCCATCCGACACAGAGGCAGGCACTCTCTTAAAATCACCAGTCAGTTCCAAAAGTCCGAAACACAAGTCTTCCAAGTCAACTCCCTCATCTACGTCTTCTACCCCAACACCAGAGAAACATCAGCGCGGCATCAGCAGATTCTTCTCCTCAAAAGGAAAGAACGGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015631 GO:0016020 GO:0016043 GO:0022607 GO:0030154 GO:0031109 GO:0032502 GO:0032989 GO:0034622 GO:0043933 GO:0044085 GO:0044464 GO:0046785 GO:0048468 GO:0048856 GO:0048869 GO:0051258 GO:0065003 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

1093

Amino Acids

121.09

Weight (kDa)

5.03

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPP	PF05911	108 - 976	0.0	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835
fragaria_vesca	FvH4_2g38730 FvH4_2g38730 FvH4_2g38730
malus_domestica	MD08G1015000.v1.1
prunus_persica	Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1
pyrus_communis	pycom08g01340 pycom15g01230
rosa_chinensis	RchiOBHm_Chr6g0302571
rosa_laevigata	RLG00000011160
rosa_multiflora	Rmu_sc0005455.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165600
rosa_rugosa	Rorug06G0315100
rosa_samantha	Rh6AG428500 Rh6BG474100 Rh6CG440700 Rh6DG427500
rosa_wichuraiana	Rw6G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1378
Acc36I	ACCTGC	1 cut(s)	3099
AccB7I	CCANNNNNTGG	1 cut(s)	2945
AccII	CGCG	1 cut(s)	3234
AccIII	TCCGGA	1 cut(s)	2077
AclI	AACGTT	3 cut(s)	747, 1144, 2217
AclWI	GGATC	6 cut(s)	231, 252, 1686, 1699, 2014, 2941
AcoI	YGGCCR	2 cut(s)	41, 2748
AcsI	RAATTY	8 cut(s)	162, 816, 1130, 1763, 2111, 2162, 2210, 2810
AcuI	CTGAAG	7 cut(s)	408, 471, 800, 1404, 2385, 2571, 2693
AfaI	GTAC	3 cut(s)	140, 785, 1107
AfiI	CCNNNNNNNGG	5 cut(s)	1655, 1788, 2378, 2476, 2945
AflII	CTTAAG	2 cut(s)	512, 2149
AflIII	ACRYGT	1 cut(s)	1071
AgeI	ACCGGT	1 cut(s)	191
AjnI	CCWGG	9 cut(s)	114, 656, 952, 1327, 1344, 1821, 2040, 2469, 2750
AjuI	GAANNNNNNNTTGG	6 cut(s)	1172, 1204, 1770, 1802, 2154, 2186
Alw21I	GWGCWC	4 cut(s)	481, 591, 2653, 2759
Alw26I	GTCTC	9 cut(s)	373, 1038, 1967, 2395, 2523, 2594, 2798, 3023, 3084
Alw44I	GTGCAC	1 cut(s)	2755
AlwI	GGATC	6 cut(s)	231, 252, 1686, 1699, 2014, 2941
AlwNI	CAGNNNCTG	1 cut(s)	1085
Aor13HI	TCCGGA	1 cut(s)	2077
AoxI	GGCC	7 cut(s)	41, 300, 459, 1000, 1425, 2173, 2748
ApaLI	GTGCAC	1 cut(s)	2755
ApoI	RAATTY	8 cut(s)	162, 816, 1130, 1763, 2111, 2162, 2210, 2810
ArsI	GACNNNNNNTTYG	6 cut(s)	351, 383, 1803, 1835, 3158, 3190
AsiGI	ACCGGT	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	2166
AspLEI	GCGC	2 cut(s)	3041, 3234
AspS9I	GGNCC	5 cut(s)	28, 459, 660, 956, 1425
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	8 cut(s)	1315, 1670, 1741, 2171, 2965, 2975, 3038, 3135
AsuII	TTCGAA	2 cut(s)	677, 1742
AvaII	GGWCC	3 cut(s)	28, 660, 956
AxyI	CCTNAGG	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	2759
BalI	TGGCCA	1 cut(s)	2750
BamHI	GGATCC	1 cut(s)	1691
BanII	GRGCYC	2 cut(s)	591, 2653
BauI	CACGAG	1 cut(s)	2646
BbsI	GAAGAC	3 cut(s)	459, 3168, 3195
Bbv12I	GWGCWC	4 cut(s)	481, 591, 2653, 2759
BbvCI	CCTCAGC	1 cut(s)	717
BceAI	ACGGC	2 cut(s)	28, 350
BciT130I	CCWGG	9 cut(s)	116, 658, 954, 1329, 1346, 1823, 2042, 2471, 2752
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	9 cut(s)	373, 1038, 1967, 2395, 2523, 2594, 2798, 3023, 3084
BfaI	CTAG	8 cut(s)	419, 797, 812, 983, 1050, 1557, 2222, 2504
BfmI	CTRYAG	1 cut(s)	1289
BfoI	RGCGCY	1 cut(s)	3042
BfrI	CTTAAG	2 cut(s)	512, 2149
BfuAI	ACCTGC	1 cut(s)	3099
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	1996
BlpI	GCTNAGC	1 cut(s)	2593
Bme18I	GGWCC	3 cut(s)	28, 660, 956
BmgT120I	GGNCC	5 cut(s)	28, 459, 660, 956, 1425
BmiI	GGNNCC	3 cut(s)	1549, 1693, 2732
BmsI	GCATC	9 cut(s)	193, 1164, 1576, 1676, 1879, 2012, 2731, 2833, 3246
BpiI	GAAGAC	3 cut(s)	459, 3168, 3195
BpmI	CTGGAG	3 cut(s)	1350, 1526, 2453
Bpu10I	CCTNAGC	3 cut(s)	717, 1236, 2652
Bpu1102I	GCTNAGC	1 cut(s)	2593
Bpu14I	TTCGAA	2 cut(s)	677, 1742
BpuEI	CTTGAG	1 cut(s)	2660
BpuMI	CCSGG	1 cut(s)	458
BsaAI	YACGTR	2 cut(s)	506, 929
BsaBI	GATNNNNATC	1 cut(s)	2382
BsaI	GGTCTC	1 cut(s)	1967
BsaJI	CCNNGG	7 cut(s)	44, 804, 1327, 1650, 2040, 2041, 2976
BsaWI	WCCGGW	2 cut(s)	191, 2077
Bsc4I	CCNNNNNNNGG	5 cut(s)	1655, 1788, 2378, 2476, 2945
Bse118I	RCCGGY	2 cut(s)	191, 1902
Bse1I	ACTGG	5 cut(s)	1695, 1731, 2199, 2994, 3146
Bse21I	CCTNAGG	1 cut(s)	626
Bse3DI	GCAATG	3 cut(s)	1161, 2791, 2906
Bse8I	GATNNNNATC	1 cut(s)	2382
BseAI	TCCGGA	1 cut(s)	2077
BseBI	CCWGG	9 cut(s)	116, 658, 954, 1329, 1346, 1823, 2042, 2471, 2752
BseDI	CCNNGG	7 cut(s)	44, 804, 1327, 1650, 2040, 2041, 2976
BseGI	GGATG	6 cut(s)	478, 1501, 1565, 2086, 2986, 3110
BseJI	GATNNNNATC	1 cut(s)	2382
BseLI	CCNNNNNNNGG	5 cut(s)	1655, 1788, 2378, 2476, 2945
BseMI	GCAATG	3 cut(s)	1161, 2791, 2906
BseNI	ACTGG	5 cut(s)	1695, 1731, 2199, 2994, 3146
BseRI	GAGGAG	4 cut(s)	215, 2450, 2965, 3244
BseSI	GKGCMC	1 cut(s)	2759
BseYI	CCCAGC	2 cut(s)	1078, 1959
BsgI	GTGCAG	2 cut(s)	948, 1826
Bsh1236I	CGCG	1 cut(s)	3234
BshFI	GGCC	7 cut(s)	43, 302, 461, 1002, 1427, 2175, 2750
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	4 cut(s)	481, 591, 2653, 2759
BsiSI	CCGG	4 cut(s)	192, 457, 1903, 2078
BslFI	GGGAC	5 cut(s)	1048, 1060, 1632, 1942, 2023
BslI	CCNNNNNNNGG	5 cut(s)	1655, 1788, 2378, 2476, 2945
BsmAI	GTCTC	9 cut(s)	373, 1038, 1967, 2395, 2523, 2594, 2798, 3023, 3084
BsmBI	CGTCTC	3 cut(s)	373, 2594, 3023
BsmFI	GGGAC	5 cut(s)	1048, 1060, 1632, 1942, 2023
BsnI	GGCC	7 cut(s)	43, 302, 461, 1002, 1427, 2175, 2750
Bso31I	GGTCTC	1 cut(s)	1967
Bsp119I	TTCGAA	2 cut(s)	677, 1742
Bsp1286I	GDGCHC	4 cut(s)	481, 591, 2653, 2759
Bsp13I	TCCGGA	1 cut(s)	2077
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp143I	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
Bsp1720I	GCTNAGC	1 cut(s)	2593
BspANI	GGCC	7 cut(s)	43, 302, 461, 1002, 1427, 2175, 2750
BspEI	TCCGGA	1 cut(s)	2077
BspFNI	CGCG	1 cut(s)	3234
BspHI	TCATGA	1 cut(s)	1582
BspLI	GGNNCC	3 cut(s)	1549, 1693, 2732
BspMI	ACCTGC	1 cut(s)	3099
BspPI	GGATC	6 cut(s)	231, 252, 1686, 1699, 2014, 2941
BspT104I	TTCGAA	2 cut(s)	677, 1742
BspTI	CTTAAG	2 cut(s)	512, 2149
BspTNI	GGTCTC	1 cut(s)	1967
BsrDI	GCAATG	3 cut(s)	1161, 2791, 2906
BsrFI	RCCGGY	2 cut(s)	191, 1902
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	5 cut(s)	1695, 1731, 2199, 2994, 3146
BssAI	RCCGGY	2 cut(s)	191, 1902
BssECI	CCNNGG	7 cut(s)	44, 804, 1327, 1650, 2040, 2041, 2976
BssMI	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
BssSI	CACGAG	1 cut(s)	2646
BssT1I	CCWWGG	2 cut(s)	804, 1650
Bst2BI	CACGAG	1 cut(s)	2646
Bst2UI	CCWGG	9 cut(s)	116, 658, 954, 1329, 1346, 1823, 2042, 2471, 2752
Bst4CI	ACNGT	5 cut(s)	18, 1855, 2255, 2945, 3272
Bst6I	CTCTTC	2 cut(s)	696, 2715
BstAFI	CTTAAG	2 cut(s)	512, 2149
BstAUI	TGTACA	1 cut(s)	1105
BstBAI	YACGTR	2 cut(s)	506, 929
BstBI	TTCGAA	2 cut(s)	677, 1742
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	1658
BstF5I	GGATG	6 cut(s)	478, 1501, 1565, 2086, 2986, 3110
BstFNI	CGCG	1 cut(s)	3234
BstH2I	RGCGCY	1 cut(s)	3042
BstHHI	GCGC	2 cut(s)	3041, 3234
BstKTI	GATC	8 cut(s)	226, 247, 616, 1323, 1694, 1999, 2022, 2936
BstMAI	GTCTC	9 cut(s)	373, 1038, 1967, 2395, 2523, 2594, 2798, 3023, 3084
BstMBI	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
BstNI	CCWGG	9 cut(s)	116, 658, 954, 1329, 1346, 1823, 2042, 2471, 2752
BstNSI	RCATGY	4 cut(s)	347, 496, 1075, 2186
BstPI	GGTNACC	1 cut(s)	1658
BstSFI	CTRYAG	1 cut(s)	1289
BstSLI	GKGCMC	1 cut(s)	2759
BstSNI	TACGTA	1 cut(s)	506
BstUI	CGCG	1 cut(s)	3234
BstV2I	GAAGAC	3 cut(s)	459, 3168, 3195
BstX2I	RGATCY	3 cut(s)	1691, 1996, 2933
BstXI	CCANNNNNNTGG	1 cut(s)	1435
BstYI	RGATCY	3 cut(s)	1691, 1996, 2933
Bsu36I	CCTNAGG	1 cut(s)	626
BsuRI	GGCC	7 cut(s)	43, 302, 461, 1002, 1427, 2175, 2750
BtgI	CCRYGG	1 cut(s)	44
BtgZI	GCGATG	2 cut(s)	1221, 2100
BtsCI	GGATG	6 cut(s)	478, 1501, 1565, 2086, 2986, 3110
BtsI	GCAGTG	2 cut(s)	444, 1602
BtsIMutI	CAGTG	8 cut(s)	294, 444, 1602, 1724, 1851, 2206, 2950, 3001
BveI	ACCTGC	1 cut(s)	3099
CaiI	CAGNNNCTG	1 cut(s)	1085
CciI	TCATGA	1 cut(s)	1582
CfoI	GCGC	2 cut(s)	3041, 3234
Cfr10I	RCCGGY	2 cut(s)	191, 1902
Cfr13I	GGNCC	5 cut(s)	28, 459, 660, 956, 1425
CseI	GACGC	2 cut(s)	1358, 2611
CsiI	ACCWGGT	1 cut(s)	952
Csp6I	GTAC	3 cut(s)	139, 784, 1106
CspAI	ACCGGT	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	1350, 1385
CviQI	GTAC	3 cut(s)	139, 784, 1106
DpnI	GATC	8 cut(s)	225, 246, 615, 1322, 1693, 1998, 2021, 2935
DpnII	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
DrdI	GACNNNNNNGTC	1 cut(s)	1378
DseDI	GACNNNNNNGTC	1 cut(s)	1378
EaeI	YGGCCR	2 cut(s)	41, 2748
Eam1104I	CTCTTC	2 cut(s)	696, 2715
EarI	CTCTTC	2 cut(s)	696, 2715
Ecl136II	GAGCTC	2 cut(s)	589, 2651
Eco105I	TACGTA	1 cut(s)	506
Eco130I	CCWWGG	2 cut(s)	804, 1650
Eco24I	GRGCYC	2 cut(s)	591, 2653
Eco31I	GGTCTC	1 cut(s)	1967
Eco32I	GATATC	1 cut(s)	1807
Eco47I	GGWCC	3 cut(s)	28, 660, 956
Eco53kI	GAGCTC	2 cut(s)	589, 2651
Eco57I	CTGAAG	7 cut(s)	408, 471, 800, 1404, 2385, 2571, 2693
Eco81I	CCTNAGG	1 cut(s)	626
Eco91I	GGTNACC	1 cut(s)	1658
EcoICRI	GAGCTC	2 cut(s)	589, 2651
EcoO109I	RGGNCCY	1 cut(s)	660
EcoO65I	GGTNACC	1 cut(s)	1658
EcoRI	GAATTC	3 cut(s)	1763, 2111, 2810
EcoRII	CCWGG	9 cut(s)	114, 656, 952, 1327, 1344, 1821, 2040, 2469, 2750
EcoRV	GATATC	1 cut(s)	1807
EcoT14I	CCWWGG	2 cut(s)	804, 1650
EcoT38I	GRGCYC	2 cut(s)	591, 2653
ErhI	CCWWGG	2 cut(s)	804, 1650
Esp3I	CGTCTC	3 cut(s)	373, 2594, 3023
FalI	AAGNNNNNCTT	2 cut(s)	1257, 1289
FaqI	GGGAC	5 cut(s)	1048, 1060, 1632, 1942, 2023
FauI	CCCGC	1 cut(s)	1854
FauNDI	CATATG	1 cut(s)	876
FokI	GGATG	6 cut(s)	485, 1508, 1552, 2093, 2993, 3097
FriOI	GRGCYC	2 cut(s)	591, 2653
FspBI	CTAG	8 cut(s)	419, 797, 812, 983, 1050, 1557, 2222, 2504
GlaI	GCGC	2 cut(s)	3040, 3233
GsaI	CCCAGC	2 cut(s)	1082, 1963
GsuI	CTGGAG	3 cut(s)	1350, 1526, 2453
HaeII	RGCGCY	1 cut(s)	3042
HaeIII	GGCC	7 cut(s)	43, 302, 461, 1002, 1427, 2175, 2750
HapII	CCGG	4 cut(s)	192, 457, 1903, 2078
HgaI	GACGC	2 cut(s)	1358, 2611
HhaI	GCGC	2 cut(s)	3041, 3234
Hin6I	GCGC	2 cut(s)	3039, 3232
HinP1I	GCGC	2 cut(s)	3039, 3232
HincII	GTYRAC	2 cut(s)	571, 3186
HindII	GTYRAC	2 cut(s)	571, 3186
HindIII	AAGCTT	7 cut(s)	902, 1043, 1185, 1250, 1366, 2675, 2855
HpaII	CCGG	4 cut(s)	192, 457, 1903, 2078
HphI	GGTGA	8 cut(s)	1315, 1670, 1741, 2171, 2965, 2975, 3038, 3135
Hpy166II	GTNNAC	8 cut(s)	571, 1055, 1879, 2204, 2341, 2757, 3058, 3186
Hpy8I	GTNNAC	8 cut(s)	571, 1055, 1879, 2204, 2341, 2757, 3058, 3186
Hpy99I	CGWCG	2 cut(s)	36, 64
HpyAV	CCTTC	4 cut(s)	875, 2299, 2960, 3029
HpyCH4III	ACNGT	5 cut(s)	18, 1855, 2255, 2945, 3272
HpyCH4IV	ACGT	8 cut(s)	505, 543, 747, 928, 1144, 2072, 2217, 3200
HpySE526I	ACGT	8 cut(s)	505, 543, 747, 928, 1144, 2072, 2217, 3200
HspAI	GCGC	2 cut(s)	3039, 3232
Kpn2I	TCCGGA	1 cut(s)	2077
Kzo9I	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
LmnI	GCTCC	4 cut(s)	172, 202, 808, 1547
LweI	GCATC	9 cut(s)	193, 1164, 1576, 1676, 1879, 2012, 2731, 2833, 3246
MabI	ACCWGGT	1 cut(s)	952
MaeI	CTAG	8 cut(s)	419, 797, 812, 983, 1050, 1557, 2222, 2504
MaeII	ACGT	8 cut(s)	505, 543, 747, 928, 1144, 2072, 2217, 3200
MaeIII	GTNAC	9 cut(s)	427, 708, 948, 1199, 1600, 1658, 1898, 2634, 2643
MalI	GATC	8 cut(s)	225, 246, 615, 1322, 1693, 1998, 2021, 2935
MboI	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
MflI	RGATCY	3 cut(s)	1691, 1996, 2933
MhlI	GDGCHC	4 cut(s)	481, 591, 2653, 2759
MlsI	TGGCCA	1 cut(s)	2750
MluNI	TGGCCA	1 cut(s)	2750
MmeI	TCCRAC	2 cut(s)	42, 3138
Mox20I	TGGCCA	1 cut(s)	2750
MroI	TCCGGA	1 cut(s)	2077
MroXI	GAANNNNTTC	1 cut(s)	2166
MscI	TGGCCA	1 cut(s)	2750
MslI	CAYNNNNRTG	3 cut(s)	471, 842, 2739
Msp20I	TGGCCA	1 cut(s)	2750
MspA1I	CMGCKG	5 cut(s)	77, 98, 1720, 2608, 2849
MspCI	CTTAAG	2 cut(s)	512, 2149
MspI	CCGG	4 cut(s)	192, 457, 1903, 2078
MvaI	CCWGG	9 cut(s)	116, 658, 954, 1329, 1346, 1823, 2042, 2471, 2752
MvnI	CGCG	1 cut(s)	3234
NciI	CCSGG	1 cut(s)	458
NdeI	CATATG	1 cut(s)	876
NdeII	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
NlaIV	GGNNCC	3 cut(s)	1549, 1693, 2732
NmeAIII	GCCGAG	5 cut(s)	1028, 2437, 2623, 2868, 2887
NmuCI	GTSAC	7 cut(s)	427, 708, 1600, 1658, 1898, 2634, 2643
NspI	RCATGY	4 cut(s)	347, 496, 1075, 2186
NspV	TTCGAA	2 cut(s)	677, 1742
PaeI	GCATGC	2 cut(s)	347, 496
PagI	TCATGA	1 cut(s)	1582
PasI	CCCWGGG	1 cut(s)	2041
PciI	ACATGT	1 cut(s)	1071
PdmI	GAANNNNTTC	1 cut(s)	2166
PflMI	CCANNNNNTGG	1 cut(s)	2945
PfoI	TCCNGGA	1 cut(s)	1821
PinAI	ACCGGT	1 cut(s)	191
Ppu21I	YACGTR	2 cut(s)	506, 929
PpuMI	RGGWCCY	1 cut(s)	660
PscI	ACATGT	1 cut(s)	1071
Psp124BI	GAGCTC	2 cut(s)	591, 2653
Psp1406I	AACGTT	3 cut(s)	747, 1144, 2217
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	9 cut(s)	114, 656, 952, 1327, 1344, 1821, 2040, 2469, 2750
PspEI	GGTNACC	1 cut(s)	1658
PspFI	CCCAGC	2 cut(s)	1078, 1959
PspGI	CCWGG	9 cut(s)	114, 656, 952, 1327, 1344, 1821, 2040, 2469, 2750
PspN4I	GGNNCC	3 cut(s)	1549, 1693, 2732
PspPI	GGNCC	5 cut(s)	28, 459, 660, 956, 1425
PspPPI	RGGWCCY	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	1085
PsuI	RGATCY	3 cut(s)	1691, 1996, 2933
PvuII	CAGCTG	2 cut(s)	1720, 2608
RsaI	GTAC	3 cut(s)	140, 785, 1107
RsaNI	GTAC	3 cut(s)	139, 784, 1106
RseI	CAYNNNNRTG	3 cut(s)	471, 842, 2739
SacI	GAGCTC	2 cut(s)	591, 2653
Sau3AI	GATC	8 cut(s)	223, 244, 613, 1320, 1691, 1996, 2019, 2933
Sau96I	GGNCC	5 cut(s)	28, 459, 660, 956, 1425
SduI	GDGCHC	4 cut(s)	481, 591, 2653, 2759
SexAI	ACCWGGT	1 cut(s)	952
SfaNI	GCATC	9 cut(s)	193, 1164, 1576, 1676, 1879, 2012, 2731, 2833, 3246
SfcI	CTRYAG	1 cut(s)	1289
SfuI	TTCGAA	2 cut(s)	677, 1742
SinI	GGWCC	3 cut(s)	28, 660, 956
SmiMI	CAYNNNNRTG	3 cut(s)	471, 842, 2739
SmlI	CTYRAG	3 cut(s)	512, 2149, 2639
SmoI	CTYRAG	3 cut(s)	512, 2149, 2639
SnaBI	TACGTA	1 cut(s)	506
SphI	GCATGC	2 cut(s)	347, 496
SspI	AATATT	1 cut(s)	179
SspMI	CTAG	8 cut(s)	419, 797, 812, 983, 1050, 1557, 2222, 2504
SstI	GAGCTC	2 cut(s)	591, 2653
StyI	CCWWGG	2 cut(s)	804, 1650
TaaI	ACNGT	5 cut(s)	18, 1855, 2255, 2945, 3272
TaiI	ACGT	8 cut(s)	508, 546, 750, 931, 1147, 2075, 2220, 3203
TaqI	TCGA	5 cut(s)	591, 677, 1021, 1541, 1742
TaqII	GACCGA	1 cut(s)	45
TatI	WGTACW	2 cut(s)	138, 1105
TauI	GCSGC	9 cut(s)	74, 89, 92, 95, 464, 650, 803, 1610, 3237
TscAI	CASTG	8 cut(s)	301, 451, 1609, 1731, 1858, 2206, 2950, 3001
TseFI	GTSAC	7 cut(s)	427, 708, 1600, 1658, 1898, 2634, 2643
Tsp45I	GTSAC	7 cut(s)	427, 708, 1600, 1658, 1898, 2634, 2643
TspDTI	ATGAA	9 cut(s)	992, 1143, 1725, 1994, 2129, 2301, 2415, 2997, 3017
TspGWI	ACGGA	4 cut(s)	1727, 2492, 2774, 3047
TspRI	CASTG	8 cut(s)	301, 451, 1609, 1731, 1858, 2206, 2950, 3001
Van91I	CCANNNNNTGG	1 cut(s)	2945
Vha464I	CTTAAG	2 cut(s)	512, 2149
VneI	GTGCAC	1 cut(s)	2755
VpaK11BI	GGWCC	3 cut(s)	28, 660, 956
XapI	RAATTY	8 cut(s)	162, 816, 1130, 1763, 2111, 2162, 2210, 2810
XbaI	TCTAGA	2 cut(s)	418, 2503
XceI	RCATGY	4 cut(s)	347, 496, 1075, 2186
XcmI	CCANNNNNNNNNTGG	2 cut(s)	328, 926
XmnI	GAANNNNTTC	1 cut(s)	2166
XspI	CTAG	8 cut(s)	419, 797, 812, 983, 1050, 1557, 2222, 2504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.