Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007254

Physical Location & Seq

Genomic Coordinates Forward (+)

61527400 .. 61532947

Gene Structure 5548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3321 bp

ATGGACCGACGGAGTTGGCCGTGGAAGAAAAAATCATCATCAGACAAAGCTGCAACCGAGAAGGCCTTAGCGGTAGCAGAGTCTGTGCCGACGCCTCTGGCAGAGAAAGATAACTACAAGAAACCAAATTATGTTCAACTTTCGGTGGAGCAATACTCACATCTCACTGGTTTGGAGGATCAAGTAAAGAATTATGAGAGTCAAGTGAAGAATTATGAGAATCAAGTGAATGCATATGAGGATCAAGTGAAGACGTACGAGGACCAATTTCAGACATTGGAGGATCAAATTACAGATTTGAATGAACAGCTCTCCACAGCCCACTCAGAGATCAGTACCCAGGAGGGCCTCGTTAAACAGCATGCTAAAGTTGCTGAAGAAGCTGTGTCAGGTTGGGAAAAGGCTGAAGCCGAAGCTCTTGCGTTAAAAACTCATTTAGAATCTGTGACGCTTTTGAAGCTGACTGCTGAAGATCGGGCATCCCATTTAGATGGTGCTCTCAAAGAGTGCATGCGACAGATTAGAAATCTTAAGGAAGATCATGAACAGAAATTGCAAGAAGTTGTTTTCACCAAAACGAAGCAATGTGACAAAATCAAGCATGAGCTCGAAGCAAGGATAGGTAATTTAGATCAAGAGCTCCTAAGGTCTGCTGCTGAAAATGCTGCTATTTCAAGGTCTTTACAAGAGCGGTCAAACATGCTATACAAGGTCAATGAAGAAAAGTCACAAGCTGAGGCAGAAATTGAGCGTTTCAAGAGCAACATTGAATCTTGTGAAAGGGAAATAAACTCTCTGAAATATGAACTTCATATTGCTTCCAAGGAGCTGGAAATTCGTACAGAGGAAAAGAACATGAGCGTGAGGTCTGCAGATGCGGCCAATAAGCAGCATATGGAGGGTGTGAAAAAAATAACTAAGCTAGAAGCAGAGTGCCAAAGACTACGTGGTCTTGTGCGGAAGAAGTTGCCTGGTCCTGCTGCACTTGCCCAAATGAAGCTTGAGGTTGAGAGTTTAGGCCGAGATTATGGAGAAACTCGGTTGAAGAGATCTCCTGTTAAGGCTTCTAGTCCACATATGTCCCAGGTGACTGAGTTTTCCCTTGACAATGTACAGAAGTTTCAGAAGGAGAATGAATTTCTGACAGAACGGTTATTAGCAATGGAAGAAGAAACAAAAATGCTTAAAGAAGCTTTGTCAAAACGTAACAGCGAATTGCAGGTTTCTAGGAGTATTTGTGCGAAGACAGTCAGCAAGCTTCAAGCATTAGAAGCACAGCTTCAAATCAGTGGTCAACAGAAAGGTTCCCCAACATCTGTTGTTCACATCACCACTGAAGGTTCCTTGAGTCAGAATGCAAGCAATCCACCAAGTTTCACCTCCATGTCTGAAGATGGAAATGATGATGACAGAAGCTGTGCTGAGTCTTGGGGCACAACATTGAACTCTGATGTCTCACACATCAAGAAGGAGAAAAACAATGAAAAGTCGAGCAAAGCTGAAAATCAAAATCATTTGAATCTTATGGATGACTTTCTGGAGATGGAGAAGTTGGCTTGCTTGCCTAATGACTCAAATGGAGATCTCTCTGTTTCAGATAGTCCAAACAATAAGTCAGGAATAGAGACCAATGACGCATCAGGAGAAGTCACTGCCGCAAAAGATATACAATCTGAGCAGCAGCATGATTCAAGTCCACTGGCAAAGCATCAAGCATCTTCTAATGGGAACCTGACAGTGCTCAGTCCTGGAGCTAATGAAAACAAGCTGCCTCTGGTGAAGCTCCGATCAAGAATCTCGGTGCTGTTAGAGTTATTATCCAAGGACACTGATTTTGGTAAAGTTATTGAGGATATCAAGCATGTGGTTCAGGAAGCACAAGATACTCTGTACCCTCACACTGTAAACTGTGTTTCTGAAGAAATTCACAGCTTTGATGCCATATGTGATAGGCAGGCACACCCTGAGGGCTCTGTTCTAACTACAGAAAAGGAAATCACAGCCAAAGAGACCATGACTGCAATAACTGAAGAACTGGCATCTGCCATATCCTTGATCCATGACTTTGTGCTGCTCTTAGGAAAAAAAATGGTGGGAGTGCATGACACATTTCCTGATGGCAATGAATTAAGTCAGAAGATTGAAGAATTTTCTGGCACATATAGTAAAGTTATTCATGGGAACTTGAGTTTGGTTGATTTGGTTCTTGACCTTTCTCATGTGTTAGCAAATGCCAGTGAACTCAAGTTTAATGTTATAGGTTTCCAGGGTGTTGAAGCAGGAAGGAATAGTCCTGATTGTATTGACAAGGTGGCCTTACCAGAGAATAAAGTAGTTGAGAAGGATTCATCAGAAAGATATCAAAATCATTGTGCCGACATTTCTAATCATTCTAACCCTGAAGTTCCTGATGATGGAAATCTAGTCTCCAGCTTTGGGTCAAATGCCACCCCATGCAAAATCTCGGTGGAGGAGTTTGAGCAATTGAAATCAGAGAAAGATAACCTGTCTATAGATTTGGCAAGATGCGCGGAAAATCTGGAGATGACTACGTCCAAGTTACAGGAAACCGAGCAGCTTCTTGCAGAAGCTAAAACACAATTTGCTTCTGCTCAAAATTCAAACAGCTTAAATGAGACGCAGCTGAAATGTATGGCAGAATCATACAGGTCACTGGAATCACGAGCCCATGAGTTAGAAACTGAACTGAAGCTACTACAGGTCAGAACTGAAACTCTGGAAAAGGAGCTGCAAGAAGAACAGAGGAATCATCAAGATGCTTTGGCTAGATGCACAGAACTTCAAGAAGAGTTGAAAAGGCAGGAGACCTTAGCAGCCGAGGCAGCAGCTGAGACGGAATTCAAGACCAAACAGGACATGGAATTGGCGGATGCAGCAGAGAAGCTTGCCGAGTGTCAAGAAACCATATTTCTTCTCGGCAAGCAGTTGAAATCTTTGCATCCTCAACCAGAGACCATGGGATCTCCATACAGTGAGAGGAGTCAAAGGGTTGAAGGGTTCACTGAGGATGAACCCACCACTACCAAAGCCATGAATTTGCATGACTCGGATCAAGCTGAGATTGAAGGTGCTGCTTCTCCCAATGTTCTTAGAGCGGGTGGCGAGTCACCCATCTATCTGTACAATGCCCCATGCAGCCCATCTGATACAGATGGGAAATCTCCTGGCAATGCCAAAACCTCAAAACACAGGCCCACAAAGTCGAGTTCCTCATCTGGCGGCTCTTCTAACCCAACACCGGAGAAACATCCACGCGGATTCAGCAGGTTTTTCTCCTCCAAAGGAAAGAATGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015631 GO:0016020 GO:0016043 GO:0022607 GO:0030154 GO:0031109 GO:0032502 GO:0032989 GO:0034622 GO:0043933 GO:0044085 GO:0044464 GO:0046785 GO:0048468 GO:0048856 GO:0048869 GO:0051258 GO:0065003 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

1106

Amino Acids

123.0

Weight (kDa)

5.15

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	50 - 204	4.6e-07	Coiled-coil domain-containing protein 39
FPP	PF05911	115 - 992	0.0	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835 AT1G19835
fragaria_vesca	FvH4_2g38730 FvH4_2g38730 FvH4_2g38730
malus_domestica	MD08G1015000.v1.1
prunus_persica	Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1 Prupe.1G368000_v2.0.a1
pyrus_communis	pycom08g01340 pycom15g01230
rosa_chinensis	RchiOBHm_Chr6g0302571
rosa_laevigata	RLG00000011160
rosa_multiflora	Rmu_sc0005455.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165600
rosa_rugosa	Rorug06G0315100
rosa_samantha	Rh6AG428500 Rh6BG474100 Rh6CG440700 Rh6DG427500
rosa_wichuraiana	Rw6G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	948
Acc36I	ACCTGC	2 cut(s)	1210, 3276
AccBSI	CCGCTC	2 cut(s)	691, 3116
AccII	CGCG	2 cut(s)	2531, 3276
AclWI	GGATC	6 cut(s)	186, 249, 291, 2050, 2989, 3078
AcoI	YGGCCR	2 cut(s)	17, 879
AcsI	RAATTY	7 cut(s)	834, 1136, 1923, 2147, 2617, 2858, 3055
AcuI	CTGAAG	9 cut(s)	396, 426, 489, 1356, 1410, 1938, 2049, 2421, 2729
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	6 cut(s)	257, 337, 841, 1113, 1892, 3143
AfiI	CCNNNNNNNGG	3 cut(s)	2414, 2436, 3259
AflII	CTTAAG	1 cut(s)	530
AjnI	CCWGG	6 cut(s)	339, 970, 1083, 1747, 2265, 3184
AjuI	GAANNNNNNNTTGG	2 cut(s)	2174, 2206
Alw21I	GWGCWC	4 cut(s)	499, 609, 642, 1743
Alw26I	GTCTC	8 cut(s)	1459, 1619, 2003, 2431, 2630, 2819, 2846, 2966
AlwI	GGATC	6 cut(s)	186, 249, 291, 2050, 2989, 3078
AlwNI	CAGNNNCTG	3 cut(s)	83, 1416, 2849
AoxI	GGCC	7 cut(s)	17, 63, 346, 879, 1018, 2313, 3212
ApoI	RAATTY	7 cut(s)	834, 1136, 1923, 2147, 2617, 2858, 3055
ArsI	GACNNNNNNTTYG	6 cut(s)	1276, 1308, 1598, 1630, 1817, 1849
Asp700I	GAANNNNTTC	1 cut(s)	1923
AspLEI	GCGC	1 cut(s)	2531
AspS9I	GGNCC	5 cut(s)	4, 262, 346, 974, 3213
AsuHPI	GGTGA	6 cut(s)	562, 1099, 1321, 1369, 1789, 3120
AvaII	GGWCC	3 cut(s)	4, 262, 974
AxyI	CCTNAGG	2 cut(s)	644, 1965
BaeGI	GKGCMC	1 cut(s)	1436
BanII	GRGCYC	4 cut(s)	609, 642, 1973, 2689
BauI	CACGAG	1 cut(s)	2682
BbsI	GAAGAC	2 cut(s)	257, 1250
Bbv12I	GWGCWC	4 cut(s)	499, 609, 642, 1743
BbvCI	CCTCAGC	1 cut(s)	735
BccI	CCATC	8 cut(s)	485, 1388, 1537, 2111, 2408, 3140, 3167, 3169
BceAI	ACGGC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
BcoDI	GTCTC	8 cut(s)	1459, 1619, 2003, 2431, 2630, 2819, 2846, 2966
BfaI	CTAG	6 cut(s)	923, 1068, 1227, 2423, 2787, 3319
BfmI	CTRYAG	4 cut(s)	870, 1983, 2511, 2717
BfrI	CTTAAG	1 cut(s)	530
BfuAI	ACCTGC	2 cut(s)	1210, 3276
BglII	AGATCT	2 cut(s)	1049, 1582
Bme1390I	CCNGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
Bme18I	GGWCC	3 cut(s)	4, 262, 974
BmgT120I	GGNCC	5 cut(s)	4, 262, 346, 974, 3213
BmiI	GGNNCC	3 cut(s)	1306, 1342, 1730
BmrFI	CCNGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
BpiI	GAAGAC	2 cut(s)	257, 1250
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	4 cut(s)	1559, 1770, 2413, 2561
Bpu10I	CCTNAGC	3 cut(s)	67, 735, 2830
BpuEI	CTTGAG	4 cut(s)	1022, 1366, 2206, 2228
BsaAI	YACGTR	1 cut(s)	947
BsaBI	GATNNNNATC	1 cut(s)	2418
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	4 cut(s)	1619, 2003, 2819, 2966
BsaJI	CCNNGG	8 cut(s)	20, 339, 822, 1083, 1821, 2266, 2838, 2976
BsaWI	WCCGGW	1 cut(s)	3259
BsaXI	ACNNNNNCTCC	2 cut(s)	1222, 1252
Bsc4I	CCNNNNNNNGG	3 cut(s)	2414, 2436, 3259
Bse1I	ACTGG	5 cut(s)	172, 1704, 2040, 2235, 2679
Bse21I	CCTNAGG	2 cut(s)	644, 1965
Bse3DI	GCAATG	4 cut(s)	590, 1167, 2128, 3196
Bse8I	GATNNNNATC	1 cut(s)	2418
BseBI	CCWGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
BseDI	CCNNGG	8 cut(s)	20, 339, 822, 1083, 1821, 2266, 2838, 2976
BseGI	GGATG	6 cut(s)	479, 1534, 2896, 2959, 3034, 3268
BseJI	GATNNNNATC	1 cut(s)	2418
BseLI	CCNNNNNNNGG	3 cut(s)	2414, 2436, 3259
BseMI	GCAATG	4 cut(s)	590, 1167, 2128, 3196
BseNI	ACTGG	5 cut(s)	172, 1704, 2040, 2235, 2679
BseRI	GAGGAG	3 cut(s)	2486, 3013, 3286
BseSI	GKGCMC	1 cut(s)	1436
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	2 cut(s)	2531, 3276
BshFI	GGCC	7 cut(s)	19, 65, 348, 881, 1020, 2315, 3214
BsiHKAI	GWGCWC	4 cut(s)	499, 609, 642, 1743
BsiSI	CCGG	1 cut(s)	3260
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	3 cut(s)	2414, 2436, 3259
BsmAI	GTCTC	8 cut(s)	1459, 1619, 2003, 2431, 2630, 2819, 2846, 2966
BsmBI	CGTCTC	2 cut(s)	2630, 2846
BsmFI	GGGAC	1 cut(s)	1066
BsmI	GAATGC	2 cut(s)	235, 1360
BsnI	GGCC	7 cut(s)	19, 65, 348, 881, 1020, 2315, 3214
Bso31I	GGTCTC	4 cut(s)	1619, 2003, 2819, 2966
Bsp1286I	GDGCHC	7 cut(s)	499, 609, 642, 1436, 1743, 1973, 2689
Bsp1407I	TGTACA	2 cut(s)	1111, 3141
Bsp19I	CCATGG	1 cut(s)	2976
BspANI	GGCC	7 cut(s)	19, 65, 348, 881, 1020, 2315, 3214
BspFNI	CGCG	2 cut(s)	2531, 3276
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	1306, 1342, 1730
BspMAI	CTGCAG	1 cut(s)	874
BspMI	ACCTGC	2 cut(s)	1210, 3276
BspPI	GGATC	6 cut(s)	186, 249, 291, 2050, 2989, 3078
BspQI	GCTCTTC	1 cut(s)	3250
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	4 cut(s)	1619, 2003, 2819, 2966
BsrBI	CCGCTC	2 cut(s)	691, 3116
BsrDI	GCAATG	4 cut(s)	590, 1167, 2128, 3196
BsrGI	TGTACA	2 cut(s)	1111, 3141
BsrI	ACTGG	5 cut(s)	172, 1704, 2040, 2235, 2679
BssECI	CCNNGG	8 cut(s)	20, 339, 822, 1083, 1821, 2266, 2838, 2976
BssNI	GRCGYC	1 cut(s)	92
BssSI	CACGAG	1 cut(s)	2682
BssT1I	CCWWGG	3 cut(s)	822, 1821, 2976
Bst2BI	CACGAG	1 cut(s)	2682
Bst2UI	CCWGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
Bst4CI	ACNGT	6 cut(s)	1152, 1249, 1738, 1903, 1910, 2993
Bst6I	CTCTTC	3 cut(s)	1040, 2802, 3250
BstACI	GRCGYC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	530
BstAUI	TGTACA	2 cut(s)	1111, 3141
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	9 cut(s)	363, 512, 1256, 1360, 1558, 1562, 1956, 2907, 2942
BstDSI	CCRYGG	2 cut(s)	20, 2976
BstF5I	GGATG	6 cut(s)	479, 1534, 2896, 2959, 3034, 3268
BstFNI	CGCG	2 cut(s)	2531, 3276
BstHHI	GCGC	1 cut(s)	2531
BstMAI	GTCTC	8 cut(s)	1459, 1619, 2003, 2431, 2630, 2819, 2846, 2966
BstNI	CCWGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
BstNSI	RCATGY	4 cut(s)	365, 514, 703, 1865
BstSCI	CCNGG	6 cut(s)	339, 970, 1083, 1747, 2265, 3184
BstSFI	CTRYAG	4 cut(s)	870, 1983, 2511, 2717
BstSLI	GKGCMC	1 cut(s)	1436
BstUI	CGCG	2 cut(s)	2531, 3276
BstV2I	GAAGAC	2 cut(s)	257, 1250
BstX2I	RGATCY	3 cut(s)	1049, 1582, 2981
BstXI	CCANNNNNNTGG	2 cut(s)	491, 829
BstYI	RGATCY	3 cut(s)	1049, 1582, 2981
Bsu36I	CCTNAGG	2 cut(s)	644, 1965
BsuRI	GGCC	7 cut(s)	19, 65, 348, 881, 1020, 2315, 3214
BtgI	CCRYGG	2 cut(s)	20, 2976
BtsCI	GGATG	6 cut(s)	479, 1534, 2896, 2959, 3034, 3268
BtsI	GCAGTG	1 cut(s)	1650
BveI	ACCTGC	2 cut(s)	1210, 3276
Cac8I	GCNNGC	9 cut(s)	363, 512, 1256, 1360, 1558, 1562, 1956, 2907, 2942
CaiI	CAGNNNCTG	3 cut(s)	83, 1416, 2849
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	2531
Cfr13I	GGNCC	5 cut(s)	4, 262, 346, 974, 3213
CseI	GACGC	4 cut(s)	100, 457, 1643, 2647
Csp6I	GTAC	6 cut(s)	256, 336, 840, 1112, 1891, 3142
CviQI	GTAC	6 cut(s)	256, 336, 840, 1112, 1891, 3142
DrdI	GACNNNNNNGTC	1 cut(s)	948
DseDI	GACNNNNNNGTC	1 cut(s)	948
EaeI	YGGCCR	2 cut(s)	17, 879
Eam1104I	CTCTTC	3 cut(s)	1040, 2802, 3250
EarI	CTCTTC	3 cut(s)	1040, 2802, 3250
EciI	GGCGGA	1 cut(s)	2903
Ecl136II	GAGCTC	2 cut(s)	607, 640
Eco130I	CCWWGG	3 cut(s)	822, 1821, 2976
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	4 cut(s)	609, 642, 1973, 2689
Eco31I	GGTCTC	4 cut(s)	1619, 2003, 2819, 2966
Eco32I	GATATC	2 cut(s)	1855, 2360
Eco47I	GGWCC	3 cut(s)	4, 262, 974
Eco53kI	GAGCTC	2 cut(s)	607, 640
Eco57I	CTGAAG	9 cut(s)	396, 426, 489, 1356, 1410, 1938, 2049, 2421, 2729
Eco81I	CCTNAGG	2 cut(s)	644, 1965
EcoICRI	GAGCTC	2 cut(s)	607, 640
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	2858
EcoRII	CCWGG	6 cut(s)	339, 970, 1083, 1747, 2265, 3184
EcoRV	GATATC	2 cut(s)	1855, 2360
EcoT14I	CCWWGG	3 cut(s)	822, 1821, 2976
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	4 cut(s)	609, 642, 1973, 2689
ErhI	CCWWGG	3 cut(s)	822, 1821, 2976
Esp3I	CGTCTC	2 cut(s)	2630, 2846
FalI	AAGNNNNNCTT	4 cut(s)	1263, 1295, 2300, 2332
FaqI	GGGAC	1 cut(s)	1066
FauI	CCCGC	1 cut(s)	3109
FauNDI	CATATG	4 cut(s)	235, 894, 1077, 1943
FokI	GGATG	6 cut(s)	466, 1541, 2903, 2946, 3041, 3255
FriOI	GRGCYC	4 cut(s)	609, 642, 1973, 2689
FspBI	CTAG	6 cut(s)	923, 1068, 1227, 2423, 2787, 3319
GlaI	GCGC	1 cut(s)	2530
GsuI	CTGGAG	4 cut(s)	1559, 1770, 2413, 2561
HaeIII	GGCC	7 cut(s)	19, 65, 348, 881, 1020, 2315, 3214
HapII	CCGG	1 cut(s)	3260
HgaI	GACGC	4 cut(s)	100, 457, 1643, 2647
HhaI	GCGC	1 cut(s)	2531
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	2529
HinP1I	GCGC	1 cut(s)	2529
HincII	GTYRAC	1 cut(s)	1295
HindII	GTYRAC	1 cut(s)	1295
HindIII	AAGCTT	4 cut(s)	998, 1191, 1256, 2903
HpaII	CCGG	1 cut(s)	3260
HphI	GGTGA	6 cut(s)	562, 1099, 1321, 1369, 1789, 3120
Hpy166II	GTNNAC	7 cut(s)	1073, 1295, 1324, 1697, 1906, 2240, 3021
Hpy8I	GTNNAC	7 cut(s)	1073, 1295, 1324, 1697, 1906, 2240, 3021
Hpy99I	CGWCG	2 cut(s)	12, 94
HpyAV	CCTTC	8 cut(s)	55, 1120, 1331, 1462, 2277, 2335, 3008, 3080
HpyCH4III	ACNGT	6 cut(s)	1152, 1249, 1738, 1903, 1910, 2993
HpyCH4IV	ACGT	4 cut(s)	254, 946, 1204, 2552
HpySE526I	ACGT	4 cut(s)	254, 946, 1204, 2552
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	1 cut(s)	2529
LguI	GCTCTTC	1 cut(s)	3250
LmnI	GCTCC	6 cut(s)	148, 645, 826, 1751, 1788, 2746
MaeI	CTAG	6 cut(s)	923, 1068, 1227, 2423, 2787, 3319
MaeII	ACGT	4 cut(s)	254, 946, 1204, 2552
MbiI	CCGCTC	2 cut(s)	691, 3116
MfeI	CAATTG	1 cut(s)	2483
MflI	RGATCY	3 cut(s)	1049, 1582, 2981
MhlI	GDGCHC	7 cut(s)	499, 609, 642, 1436, 1743, 1973, 2689
MlyI	GAGTC	8 cut(s)	89, 208, 1357, 1433, 1565, 3010, 3059, 3134
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	1923
MseI	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2129, 2250, 2630
MslI	CAYNNNNRTG	4 cut(s)	489, 860, 1382, 2775
MspA1I	CMGCKG	2 cut(s)	2644, 2849
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	3260
MspR9I	CCNGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
MunI	CAATTG	1 cut(s)	2483
Mva1269I	GAATGC	2 cut(s)	235, 1360
MvaI	CCWGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
MvnI	CGCG	2 cut(s)	2531, 3276
NcoI	CCATGG	1 cut(s)	2976
NdeI	CATATG	4 cut(s)	235, 894, 1077, 1943
NlaIV	GGNNCC	3 cut(s)	1306, 1342, 1730
NmeAIII	GCCGAG	4 cut(s)	1046, 2863, 2916, 2935
NmuCI	GTSAC	7 cut(s)	445, 587, 726, 1087, 1648, 2670, 3126
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	4 cut(s)	365, 514, 703, 1865
PaeI	GCATGC	2 cut(s)	365, 514
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	3250
PctI	GAATGC	2 cut(s)	235, 1360
PdmI	GAANNNNTTC	1 cut(s)	1923
Pfl23II	CGTACG	1 cut(s)	255
PflFI	GACNNNGTC	1 cut(s)	2551
PfoI	TCCNGGA	1 cut(s)	1747
PleI	GAGTC	8 cut(s)	88, 207, 1356, 1432, 1565, 3009, 3059, 3133
PpsI	GAGTC	8 cut(s)	88, 207, 1356, 1432, 1565, 3009, 3059, 3133
Ppu21I	YACGTR	1 cut(s)	947
Psp124BI	GAGCTC	2 cut(s)	609, 642
Psp6I	CCWGG	6 cut(s)	339, 970, 1083, 1747, 2265, 3184
PspGI	CCWGG	6 cut(s)	339, 970, 1083, 1747, 2265, 3184
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	1306, 1342, 1730
PspPI	GGNCC	5 cut(s)	4, 262, 346, 974, 3213
PsrI	GAACNNNNNNTAC	2 cut(s)	2697, 2729
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	3 cut(s)	83, 1416, 2849
PsuI	RGATCY	3 cut(s)	1049, 1582, 2981
PsyI	GACNNNGTC	1 cut(s)	2551
PvuII	CAGCTG	2 cut(s)	2644, 2849
RsaI	GTAC	6 cut(s)	257, 337, 841, 1113, 1892, 3143
RsaNI	GTAC	6 cut(s)	256, 336, 840, 1112, 1891, 3142
RseI	CAYNNNNRTG	4 cut(s)	489, 860, 1382, 2775
SacI	GAGCTC	2 cut(s)	609, 642
SapI	GCTCTTC	1 cut(s)	3250
SaqAI	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2129, 2250, 2630
Sau96I	GGNCC	5 cut(s)	4, 262, 346, 974, 3213
SchI	GAGTC	8 cut(s)	89, 208, 1357, 1433, 1565, 3010, 3059, 3134
ScrFI	CCNGG	6 cut(s)	341, 972, 1085, 1749, 2267, 3186
SduI	GDGCHC	7 cut(s)	499, 609, 642, 1436, 1743, 1973, 2689
SfcI	CTRYAG	4 cut(s)	870, 1983, 2511, 2717
SinI	GGWCC	3 cut(s)	4, 262, 974
SmiMI	CAYNNNNRTG	4 cut(s)	489, 860, 1382, 2775
SmlI	CTYRAG	5 cut(s)	530, 1001, 1345, 2185, 2243
SmoI	CTYRAG	5 cut(s)	530, 1001, 1345, 2185, 2243
SphI	GCATGC	2 cut(s)	365, 514
SseBI	AGGCCT	1 cut(s)	65
SspMI	CTAG	6 cut(s)	923, 1068, 1227, 2423, 2787, 3319
SstI	GAGCTC	2 cut(s)	609, 642
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	6 cut(s)	339, 970, 1083, 1747, 2265, 3184
StyI	CCWWGG	3 cut(s)	822, 1821, 2976
TaaI	ACNGT	6 cut(s)	1152, 1249, 1738, 1903, 1910, 2993
TaiI	ACGT	4 cut(s)	257, 949, 1207, 2555
TaqI	TCGA	3 cut(s)	609, 1490, 3224
TaqII	GACCGA	1 cut(s)	21
TatI	WGTACW	2 cut(s)	1111, 3141
TauI	GCSGC	3 cut(s)	881, 1658, 3243
Tru1I	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2129, 2250, 2630
Tru9I	TTAA	8 cut(s)	354, 425, 531, 1059, 1185, 2129, 2250, 2630
TseFI	GTSAC	7 cut(s)	445, 587, 726, 1087, 1648, 2670, 3126
Tsp45I	GTSAC	7 cut(s)	445, 587, 726, 1087, 1648, 2670, 3126
TspGWI	ACGGA	2 cut(s)	25, 2870
Tth111I	GACNNNGTC	1 cut(s)	2551
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	3 cut(s)	4, 262, 974
XapI	RAATTY	7 cut(s)	834, 1136, 1923, 2147, 2617, 2858, 3055
XceI	RCATGY	4 cut(s)	365, 514, 703, 1865
XcmI	CCANNNNNNNNNTGG	2 cut(s)	944, 2875
XmnI	GAANNNNTTC	1 cut(s)	1923
XspI	CTAG	6 cut(s)	923, 1068, 1227, 2423, 2787, 3319
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.