Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Reverse (-)

28070053 .. 28073020

Gene Structure 2968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGGAGAAGCCGTCGGGGAAGAGAGTCAAGTCGGAGGAGGATCACGTCGCGAAGAAGGTGAAGACGGAGGAGGACCACGGCGGTAGCAGAAGCTTGGATACTGGGAAAGCCGATAAGCTGGTGTGGCTGATGAAGCTGCCGCAGGCGGTGGCCAAGTCTTGGAACTCGCACCCTTCCTCCGATCCTCACCCCGTCGCCAAAGTCGTCCTCTCCCTCGATCCGCTCGAAACCGATGAGACCGCCGCCGTGCAGTTTAAAATGGAGGTCGCCCCCACTGAGACTGGGATGAAGCCGAAGAGTTATTCGATGAACATGTCGAAGGACTTTATTCCTATGTGTGTTTTCTCCGAGGCAAATCAAGGCAAGATCTCTGTGGAAGGAAAAGTAGAGCACAAGTTTGACATGAAGCCCCATGGTACAAACTTTGAGGAGTATGGGAAGTTGTGTCGAGAAAGGACAAACAAGTCCATGATCAAGAATAGGCAAATACAGGTGATCGACAATGACCGAGGAGTACATATGAGGCCCATGCCTGGTATGATTGGCTTGATTTCTACCAATCCCAAGGATAAGAAGAAACCTGTACCGGTTAAACAATCAGATGTCAAGAGGACTAGAAGGGATCGTGGGGAACTGGAGGATATCATGTTCAAGTTATTTGAAAGACAACCAAATTGGGCATTGAAGCAGCTTGTGCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATACTAAATGAGCTGTGTGTATACAACAAAAGGGGAACCAACCAGGGTACTTACGAGCTTAAGCCAGAGTACAAAAAATCTGTTGATGATACACCTGCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

280

Amino Acids

31.83

Weight (kDa)

8.87

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIF_beta_N	PF17683	40 - 148	2.7e-08	TFIIF, beta subunit N-terminus
TFIIF_beta	PF02270	207 - 270	6.3e-21	TFIIF, beta subunit HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	53
AciI	CCGC	7 cut(s)	84, 143, 149, 224, 243, 246, 833
AclWI	GGATC	4 cut(s)	51, 179, 215, 633
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	5 cut(s)	421, 519, 588, 784, 806
AfiI	CCNNNNNNNGG	2 cut(s)	162, 536
AflII	CTTAAG	1 cut(s)	794
AflIII	ACRYGT	1 cut(s)	315
AgeI	ACCGGT	1 cut(s)	589
AgsI	TTSAA	4 cut(s)	655, 665, 688, 730
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	535, 777
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
AluBI	AGCT	6 cut(s)	96, 121, 139, 694, 748, 793
AluI	AGCT	6 cut(s)	96, 121, 139, 694, 748, 793
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	3 cut(s)	233, 275, 698
AlwI	GGATC	4 cut(s)	51, 179, 215, 633
AoxI	GGCC	2 cut(s)	153, 527
ApeKI	GCWGC	2 cut(s)	139, 691
AsiGI	ACCGGT	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	76, 528
AsuHPI	GGTGA	3 cut(s)	73, 182, 508
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	85, 117
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	126, 703
BceAI	ACGGC	2 cut(s)	97, 233
BciT130I	CCWGG	2 cut(s)	537, 779
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	2 cut(s)	474, 709
BcoDI	GTCTC	3 cut(s)	233, 275, 698
BfaI	CTAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	4 cut(s)	140, 143, 246, 692
BlsI	GCNGC	4 cut(s)	141, 144, 247, 693
Bme1390I	CCNGG	2 cut(s)	537, 779
Bme18I	GGWCC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	76, 528
BmiI	GGNNCC	1 cut(s)	772
BmrFI	CCNGG	2 cut(s)	537, 779
BmrI	ACTGGG	2 cut(s)	114, 294
BmuI	ACTGGG	2 cut(s)	114, 294
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	6 cut(s)	79, 351, 415, 511, 567, 778
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 536
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	3 cut(s)	109, 289, 642
BseBI	CCWGG	2 cut(s)	537, 779
BseDI	CCNNGG	6 cut(s)	79, 351, 415, 511, 567, 778
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	162, 536
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	109, 289, 642
BseRI	GAGGAG	5 cut(s)	20, 53, 86, 446, 528
BseXI	GCAGC	2 cut(s)	126, 703
BsgI	GTGCAG	2 cut(s)	272, 702
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	155, 529
BshTI	ACCGGT	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	2 cut(s)	162, 536
BsmAI	GTCTC	3 cut(s)	233, 275, 698
BsnI	GGCC	2 cut(s)	155, 529
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
Bsp19I	CCATGG	1 cut(s)	415
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	7 cut(s)	84, 143, 149, 224, 243, 246, 833
BspANI	GGCC	2 cut(s)	155, 529
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	4 cut(s)	51, 179, 215, 633
BspTI	CTTAAG	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	3 cut(s)	109, 289, 642
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	6 cut(s)	79, 351, 415, 511, 567, 778
BssMI	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
BssNAI	GTATAC	1 cut(s)	757
BssT1I	CCWWGG	2 cut(s)	415, 567
Bst1107I	GTATAC	1 cut(s)	757
Bst2UI	CCWGG	2 cut(s)	537, 779
Bst6I	CTCTTC	2 cut(s)	17, 293
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	2 cut(s)	79, 415
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	8 cut(s)	46, 187, 223, 372, 477, 501, 628, 712
BstMAI	GTCTC	3 cut(s)	233, 275, 698
BstMBI	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 136, 697
BstNI	CCWGG	2 cut(s)	537, 779
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	535, 777
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	126, 703
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BstZ17I	GTATAC	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	155, 529
BtgI	CCRYGG	2 cut(s)	79, 415
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	276
BtuMI	TCGCGA	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	2 cut(s)	76, 528
Csp6I	GTAC	5 cut(s)	420, 518, 587, 783, 805
CspAI	ACCGGT	1 cut(s)	589
CviAII	CATG	6 cut(s)	316, 406, 416, 472, 532, 649
CviQI	GTAC	5 cut(s)	420, 518, 587, 783, 805
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	8 cut(s)	45, 186, 222, 371, 476, 500, 627, 711
DpnII	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
DraI	TTTAAA	1 cut(s)	259
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	17, 293
EarI	CTCTTC	2 cut(s)	17, 293
Eco130I	CCWWGG	2 cut(s)	415, 567
Eco31I	GGTCTC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	535, 777
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	415, 567
ErhI	CCWWGG	2 cut(s)	415, 567
FaeI	CATG	6 cut(s)	319, 409, 419, 475, 535, 652
FatI	CATG	6 cut(s)	315, 405, 415, 471, 531, 648
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	2 cut(s)	474, 709
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	4 cut(s)	140, 143, 246, 692
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	4 cut(s)	140, 143, 246, 692
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	4 cut(s)	140, 143, 246, 692
GsuI	CTGGAG	1 cut(s)	659
HaeIII	GGCC	2 cut(s)	155, 529
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	6 cut(s)	319, 409, 419, 475, 535, 652
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	73, 182, 508
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	4 cut(s)	37, 184, 352, 604
Hpy188III	TCNNGA	5 cut(s)	52, 452, 478, 610, 727
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	3 cut(s)	19, 53, 200
HpyAV	CCTTC	5 cut(s)	52, 186, 316, 374, 615
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	253, 700, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 136, 697
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	319, 409, 419, 475, 535, 652
Ksp22I	TGATCA	2 cut(s)	474, 709
Kzo9I	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
Lsp1109I	GCAGC	2 cut(s)	126, 703
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	48
MalI	GATC	8 cut(s)	45, 186, 222, 371, 476, 500, 627, 711
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
MboII	GAAGA	5 cut(s)	34, 67, 76, 310, 589
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	676, 722
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	15
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	258, 594, 795
Msp20I	TGGCCA	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	537, 779
MvaI	CCWGG	2 cut(s)	537, 779
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	127, 136, 697
NcoI	CCATGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
NlaIII	CATG	6 cut(s)	319, 409, 419, 475, 535, 652
NlaIV	GGNNCC	1 cut(s)	772
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 225
PflMI	CCANNNNNTGG	1 cut(s)	162
PinAI	ACCGGT	1 cut(s)	589
PkrI	GCNGC	4 cut(s)	141, 144, 247, 693
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	535, 777
PspGI	CCWGG	2 cut(s)	535, 777
PspN4I	GGNNCC	1 cut(s)	772
PspPI	GGNCC	2 cut(s)	76, 528
PsuI	RGATCY	1 cut(s)	369
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	5 cut(s)	421, 519, 588, 784, 806
RsaNI	GTAC	5 cut(s)	420, 518, 587, 783, 805
SaqAI	TTAA	3 cut(s)	258, 594, 795
SatI	GCNGC	4 cut(s)	140, 143, 246, 692
Sau3AI	GATC	8 cut(s)	43, 184, 220, 369, 474, 498, 625, 709
Sau96I	GGNCC	2 cut(s)	76, 528
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	537, 779
SduI	GDGCHC	1 cut(s)	396
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	2 cut(s)	676, 722
SsiI	CCGC	7 cut(s)	84, 143, 149, 224, 243, 246, 833
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	535, 777
StyI	CCWWGG	2 cut(s)	415, 567
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	6 cut(s)	219, 228, 308, 320, 451, 501
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	676, 722
TatI	WGTACW	2 cut(s)	517, 804
TauI	GCSGC	2 cut(s)	145, 248
Tru1I	TTAA	3 cut(s)	258, 594, 795
Tru9I	TTAA	3 cut(s)	258, 594, 795
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	139, 691
TspDTI	ATGAA	4 cut(s)	149, 305, 326, 422
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	162
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.