Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Forward (+)

33870216 .. 33872763

Gene Structure 2548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G371700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGGAGGAGCGTGGTAATGGTAGTAGTAGTAGCAGGAACTTGGACACAGGGAAGGCCGAGAGCCCGGTGTGGCTGATGAAGTGCCCGGTGGTCGTAGCCAAGTCATGGAACTCTCACAACCCCTCTGATCCCCACCCTCTCTCCAAAGTCGTCCTCTCTCTCGATCCCCTCCGCGCCGACGACCCCTCTTCCCTCGAGTTCAAAATGGAGATGGCTGGCAGCAGTGGGGCTGCGAATTTGCCTAAAAGTTATTCCTTGAATATGTTTAAAGACTTCGTTCCCATGTGCGTTTTCTCCGAGACAAATCAAGGCAAGGTTTCTATGGAAGGGAAAGTAGAGCATAAGTTTGACATGAAGCCCCATGGTTCAAACATTGAGGAGTATGGAAAGTTGTGTCGTGAAAGGACAAACAAGTCAATGATCAAGAATAGGCAAATACAGGTGATTGACAATGACCGAGGAATACATATGAGGCCCATGCCTGGTATGATTGGCTTGATTTCATCCACTTCCAAGGATAAGAAGAAAACTCATCCGGTTAAACAATCAGACATGAAAAGGACTAGAAGAGACCGGGGGGAACTGGAGGATATCGTGTTCAAGTTATTTGAAAAACAACCAAATTGGACTTTGAAGCAGCTTGTGCAAGAAACTGATCAGCCTGCTCAATTCTTGAAAGAGATACTGAATGAGCTCTGCGTGTACAATAAAAGAGGAACTAACCAGGGTACTTATGAGCTTAAGCCGGAGTACAAGAAATCTGTTGAGGATACAGCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

8.72

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	2 cut(s)	125, 161
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	3 cut(s)	707, 733, 755
AfiI	CCNNNNNNNGG	2 cut(s)	108, 485
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	7 cut(s)	205, 262, 372, 604, 614, 637, 679
AjnI	CCWGG	2 cut(s)	484, 726
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	4 cut(s)	643, 697, 742, 779
AluI	AGCT	4 cut(s)	643, 697, 742, 779
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	296, 567
AlwI	GGATC	2 cut(s)	125, 161
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	57, 476
ApeKI	GCWGC	3 cut(s)	222, 233, 640
ApoI	RAATTY	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	3 cut(s)	68, 89, 578
AsuHPI	GGTGA	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	68, 699
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	3 cut(s)	220, 234, 652
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	486, 728
BciVI	GTATCC	1 cut(s)	766
BclI	TGATCA	2 cut(s)	423, 658
BcnI	CCSGG	3 cut(s)	68, 89, 578
BcoDI	GTCTC	2 cut(s)	296, 567
BfaI	CTAG	1 cut(s)	567
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	3 cut(s)	223, 234, 641
BlsI	GCNGC	3 cut(s)	224, 235, 642
Bme1390I	CCNGG	5 cut(s)	68, 89, 486, 578, 728
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	477
BmrFI	CCNGG	5 cut(s)	68, 89, 486, 578, 728
BpmI	CTGGAG	1 cut(s)	608
BpuMI	CCSGG	3 cut(s)	68, 89, 578
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	5 cut(s)	364, 460, 516, 577, 727
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 485
Bse1I	ACTGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	486, 728
BseDI	CCNNGG	5 cut(s)	364, 460, 516, 577, 727
BseGI	GGATG	2 cut(s)	506, 535
BseLI	CCNNNNNNNGG	2 cut(s)	108, 485
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	3 cut(s)	20, 23, 395
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	220, 234, 652
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	59, 478
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	68, 89, 539, 577, 749
BslI	CCNNNNNNNGG	2 cut(s)	108, 485
BsmAI	GTCTC	2 cut(s)	296, 567
BsnI	GGCC	2 cut(s)	59, 478
Bso31I	GGTCTC	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	68, 89, 699
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	4 cut(s)	130, 166, 423, 658
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	59, 478
BspFNI	CGCG	1 cut(s)	177
BspPI	GGATC	2 cut(s)	125, 161
BspTI	CTTAAG	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	5 cut(s)	364, 460, 516, 577, 727
BssMI	GATC	4 cut(s)	130, 166, 423, 658
BssT1I	CCWWGG	2 cut(s)	364, 516
Bst2UI	CCWGG	2 cut(s)	486, 728
Bst6I	CTCTTC	2 cut(s)	196, 565
BstAFI	CTTAAG	1 cut(s)	743
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstAUI	TGTACA	1 cut(s)	705
BstC8I	GCNNGC	2 cut(s)	220, 666
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	506, 535
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	133, 169, 426, 661
BstMAI	GTCTC	2 cut(s)	296, 567
BstMBI	GATC	4 cut(s)	130, 166, 423, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstNI	CCWGG	2 cut(s)	486, 728
BstSCI	CCNGG	5 cut(s)	66, 87, 484, 576, 726
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	220, 234, 652
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	59, 478
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	506, 535
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	220, 666
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	706, 732, 754
CviAII	CATG	6 cut(s)	108, 286, 355, 365, 481, 556
CviQI	GTAC	3 cut(s)	706, 732, 754
DpnI	GATC	4 cut(s)	132, 168, 425, 660
DpnII	GATC	4 cut(s)	130, 166, 423, 658
DraI	TTTAAA	1 cut(s)	271
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	2 cut(s)	196, 565
EarI	CTCTTC	2 cut(s)	196, 565
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	364, 516
Eco24I	GRGCYC	2 cut(s)	68, 699
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	697
EcoRII	CCWGG	2 cut(s)	484, 726
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	364, 516
EcoT38I	GRGCYC	2 cut(s)	68, 699
ErhI	CCWWGG	2 cut(s)	364, 516
FaeI	CATG	6 cut(s)	111, 289, 358, 368, 484, 559
FatI	CATG	6 cut(s)	107, 285, 354, 364, 480, 555
FauNDI	CATATG	1 cut(s)	471
FbaI	TGATCA	2 cut(s)	423, 658
Fnu4HI	GCNGC	3 cut(s)	223, 234, 641
FokI	GGATG	2 cut(s)	493, 522
FriOI	GRGCYC	2 cut(s)	68, 699
Fsp4HI	GCNGC	3 cut(s)	223, 234, 641
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	223, 234, 641
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	59, 478
HapII	CCGG	5 cut(s)	68, 89, 539, 577, 749
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	6 cut(s)	111, 289, 358, 368, 484, 559
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HpaII	CCGG	5 cut(s)	68, 89, 539, 577, 749
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	3 cut(s)	130, 301, 553
Hpy188III	TCNNGA	4 cut(s)	164, 401, 427, 676
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	49, 323
HpyCH4V	TGCA	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
Hsp92II	CATG	6 cut(s)	111, 289, 358, 368, 484, 559
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	2 cut(s)	423, 658
Kzo9I	GATC	4 cut(s)	130, 166, 423, 658
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	220, 234, 652
MaeI	CTAG	1 cut(s)	567
MalI	GATC	4 cut(s)	132, 168, 425, 660
MboI	GATC	4 cut(s)	130, 166, 423, 658
MboII	GAAGA	3 cut(s)	183, 538, 582
MhlI	GDGCHC	3 cut(s)	68, 89, 699
MluCI	AATT	3 cut(s)	238, 625, 671
MseI	TTAA	3 cut(s)	270, 543, 744
MspA1I	CMGCKG	1 cut(s)	779
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	5 cut(s)	68, 89, 539, 577, 749
MspR9I	CCNGG	5 cut(s)	68, 89, 486, 578, 728
MvaI	CCWGG	2 cut(s)	486, 728
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	646
NciI	CCSGG	3 cut(s)	68, 89, 578
NcoI	CCATGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	471
NdeII	GATC	4 cut(s)	130, 166, 423, 658
NlaIII	CATG	6 cut(s)	111, 289, 358, 368, 484, 559
NmeAIII	GCCGAG	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	224, 235, 642
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	484, 726
PspGI	CCWGG	2 cut(s)	484, 726
PspPI	GGNCC	1 cut(s)	477
PspXI	VCTCGAGB	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	3 cut(s)	707, 733, 755
RsaNI	GTAC	3 cut(s)	706, 732, 754
SacI	GAGCTC	1 cut(s)	699
SaqAI	TTAA	3 cut(s)	270, 543, 744
SatI	GCNGC	3 cut(s)	223, 234, 641
Sau3AI	GATC	4 cut(s)	130, 166, 423, 658
Sau96I	GGNCC	1 cut(s)	477
ScrFI	CCNGG	5 cut(s)	68, 89, 486, 578, 728
SduI	GDGCHC	3 cut(s)	68, 89, 699
SetI	ASST	6 cut(s)	321, 447, 645, 699, 744, 781
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	197, 743
SmoI	CTYRAG	2 cut(s)	197, 743
Sse9I	AATT	3 cut(s)	238, 625, 671
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	5 cut(s)	66, 87, 484, 576, 726
StyI	CCWWGG	2 cut(s)	364, 516
TaqI	TCGA	2 cut(s)	165, 198
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	3 cut(s)	238, 625, 671
TatI	WGTACW	2 cut(s)	705, 753
Tru1I	TTAA	3 cut(s)	270, 543, 744
Tru9I	TTAA	3 cut(s)	270, 543, 744
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	222, 233, 640
TspDTI	ATGAA	4 cut(s)	95, 371, 495, 572
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	743
XapI	RAATTY	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.