Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Forward (+)

1284751 .. 1286633

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGCGTCGAGAAGAGAGAGAGAGATTCGACGGAGGAGGAGCGCGGGAACAGCAGCAGCAGCAGCAGCAGTCGGATGGACACGGGGAGGGCGGAGGCCCCGGTGTGGCTGATGAAGTGCCCGGTGGTCGTCGCCAAGTCCTGGAGCTCCCACAACCCCTCCGATCCCCACAAAGTGGACCCGATCGCCAAAGTCGTCCTCTCTTTCGATCCCCTCCGCGCCGACGACCCATCTGCCATGGAGTTCAAGATGGAGATGCCTGGCTCCGCGGCCGCGAATTTGCCACAAAGTTATTCCTTGAATATGTTTAAAGACTTCGTTCCCATGTGCGTTTTTTCGGAAACAAATCAAGGCAAAGTTTCTGTGGAAGGTAAAGTGGATCTCAAGTTTGATATGAAGCCTCACGGTACTAACATTGAGGAGTATGGGAAGCTGTGTCGTGAAAGGACAAACAAATCCATGATCAAGAACAGACAAATACAGATGATCGACAATGACCGAGGAATACTTATGAGGCCCATGCCTGGGATGATTGGTTTGGTTTCATCCACCTCAAAGGATAAGAAGAAAACGGCACCGGTTAAACAATCAGACATGAAAAGGACTAGAAGAGATCGTGGGGAACTGGAGGACATAGTGTTCAAGTTATTTGAACAAAAACAACCAAACTGGACCTTGAAGCAGCTGGTGCAAGAAACCAATCAACCTGCGCAATTCTTGAAAGAGATACTGAATGAGCTCTGCGTTTACAACAAAAGGGGAACGAACCAGGGTACTTATGAGCTCAAGCCAGAATACAAGAAATCTGTTGAGGATACTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

276

Amino Acids

31.34

Weight (kDa)

8.52

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	574
AccB7I	CCANNNNNTGG	2 cut(s)	141, 175
AccII	CGCG	4 cut(s)	45, 219, 269, 275
AciI	CCGC	6 cut(s)	45, 92, 217, 267, 269, 273
AclWI	GGATC	3 cut(s)	158, 203, 387
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	6
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	409, 775
AfiI	CCNNNNNNNGG	5 cut(s)	105, 141, 175, 524, 525
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	6 cut(s)	247, 301, 643, 653, 679, 721
AjnI	CCWGG	4 cut(s)	140, 259, 523, 768
AloI	GAACNNNNNNTCC	2 cut(s)	623, 655
AluBI	AGCT	5 cut(s)	147, 433, 685, 739, 784
AluI	AGCT	5 cut(s)	147, 433, 685, 739, 784
Alw21I	GWGCWC	3 cut(s)	149, 741, 786
AlwI	GGATC	3 cut(s)	158, 203, 387
AoxI	GGCC	3 cut(s)	96, 270, 515
ApeKI	GCWGC	6 cut(s)	54, 57, 60, 63, 66, 682
ApoI	RAATTY	1 cut(s)	277
AsiGI	ACCGGT	1 cut(s)	577
AspLEI	GCGC	3 cut(s)	45, 221, 712
AspS9I	GGNCC	4 cut(s)	97, 178, 516, 672
AsuC2I	CCSGG	2 cut(s)	101, 122
AvaII	GGWCC	2 cut(s)	178, 672
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	3 cut(s)	149, 741, 786
Bbv12I	GWGCWC	3 cut(s)	149, 741, 786
BbvI	GCAGC	6 cut(s)	66, 69, 72, 75, 78, 694
BccI	CCATC	3 cut(s)	70, 238, 244
BceAI	ACGGC	1 cut(s)	588
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	4 cut(s)	142, 261, 525, 770
BciVI	GTATCC	1 cut(s)	808
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	2 cut(s)	101, 122
BfaI	CTAG	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	808
BisI	GCNGC	8 cut(s)	55, 58, 61, 64, 67, 270, 273, 683
BlsI	GCNGC	8 cut(s)	56, 59, 62, 65, 68, 271, 274, 684
Bme1390I	CCNGG	6 cut(s)	101, 122, 142, 261, 525, 770
Bme18I	GGWCC	2 cut(s)	178, 672
BmgT120I	GGNCC	4 cut(s)	97, 178, 516, 672
BmiI	GGNNCC	4 cut(s)	99, 180, 265, 576
BmrFI	CCNGG	6 cut(s)	101, 122, 142, 261, 525, 770
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	2 cut(s)	163, 647
BpuEI	CTTGAG	2 cut(s)	368, 770
BpuMI	CCSGG	2 cut(s)	101, 122
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	6 cut(s)	99, 237, 267, 499, 524, 769
BsaWI	WCCGGW	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 141, 175, 524, 525
Bse118I	RCCGGY	1 cut(s)	577
Bse1I	ACTGG	2 cut(s)	630, 674
BseBI	CCWGG	4 cut(s)	142, 261, 525, 770
BseDI	CCNNGG	6 cut(s)	99, 237, 267, 499, 524, 769
BseGI	GGATG	3 cut(s)	81, 534, 545
BseLI	CCNNNNNNNGG	5 cut(s)	105, 141, 175, 524, 525
BseNI	ACTGG	2 cut(s)	630, 674
BseRI	GAGGAG	3 cut(s)	50, 53, 434
BseSI	GKGCMC	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	6 cut(s)	66, 69, 72, 75, 78, 694
Bsh1236I	CGCG	4 cut(s)	45, 219, 269, 275
Bsh1285I	CGRYCG	2 cut(s)	186, 273
BshFI	GGCC	3 cut(s)	98, 272, 517
BshNI	GGYRCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	577
BsiEI	CGRYCG	2 cut(s)	186, 273
BsiHKAI	GWGCWC	3 cut(s)	149, 741, 786
BsiSI	CCGG	3 cut(s)	101, 122, 578
BslI	CCNNNNNNNGG	5 cut(s)	105, 141, 175, 524, 525
BsnI	GGCC	3 cut(s)	98, 272, 517
Bsp1286I	GDGCHC	4 cut(s)	122, 149, 741, 786
Bsp143I	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	6 cut(s)	45, 92, 217, 267, 269, 273
BspANI	GGCC	3 cut(s)	98, 272, 517
BspFNI	CGCG	4 cut(s)	45, 219, 269, 275
BspLI	GGNNCC	4 cut(s)	99, 180, 265, 576
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	3 cut(s)	158, 203, 387
BspT107I	GGYRCC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	630, 674
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	6 cut(s)	99, 237, 267, 499, 524, 769
BssMI	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	4 cut(s)	142, 261, 525, 770
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	8, 604
BstACI	GRCGYC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstDSI	CCRYGG	2 cut(s)	237, 267
BstF5I	GGATG	3 cut(s)	81, 534, 545
BstFNI	CGCG	4 cut(s)	45, 219, 269, 275
BstHHI	GCGC	3 cut(s)	45, 221, 712
BstKTI	GATC	7 cut(s)	166, 186, 211, 382, 465, 489, 616
BstMBI	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
BstMCI	CGRYCG	2 cut(s)	186, 273
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 60, 63, 66, 688
BstNI	CCWGG	4 cut(s)	142, 261, 525, 770
BstSCI	CCNGG	6 cut(s)	99, 120, 140, 259, 523, 768
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	4 cut(s)	45, 219, 269, 275
BstV1I	GCAGC	6 cut(s)	66, 69, 72, 75, 78, 694
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BstZI	CGGCCG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	3 cut(s)	98, 272, 517
BtgI	CCRYGG	2 cut(s)	237, 267
BtsCI	GGATG	3 cut(s)	81, 534, 545
BveI	ACCTGC	1 cut(s)	715
CciNI	GCGGCCGC	1 cut(s)	270
CfoI	GCGC	3 cut(s)	45, 221, 712
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	4 cut(s)	97, 178, 516, 672
Cfr42I	CCGCGG	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	408, 774
CspAI	ACCGGT	1 cut(s)	577
CviAII	CATG	5 cut(s)	238, 325, 460, 520, 595
CviQI	GTAC	2 cut(s)	408, 774
DpnI	GATC	7 cut(s)	165, 185, 210, 381, 464, 488, 615
DpnII	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
DraI	TTTAAA	1 cut(s)	310
DraIII	CACNNNGTG	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	8, 604
EarI	CTCTTC	2 cut(s)	8, 604
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	3 cut(s)	147, 739, 784
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	3 cut(s)	149, 741, 786
Eco47I	GGWCC	2 cut(s)	178, 672
Eco52I	CGGCCG	1 cut(s)	270
Eco53kI	GAGCTC	3 cut(s)	147, 739, 784
EcoICRI	GAGCTC	3 cut(s)	147, 739, 784
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	4 cut(s)	140, 259, 523, 768
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	3 cut(s)	149, 741, 786
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	5 cut(s)	241, 328, 463, 523, 598
FatI	CATG	5 cut(s)	237, 324, 459, 519, 594
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	462
Fnu4HI	GCNGC	8 cut(s)	55, 58, 61, 64, 67, 270, 273, 683
FokI	GGATG	3 cut(s)	88, 532, 541
FriOI	GRGCYC	3 cut(s)	149, 741, 786
Fsp4HI	GCNGC	8 cut(s)	55, 58, 61, 64, 67, 270, 273, 683
FspBI	CTAG	1 cut(s)	606
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	3 cut(s)	44, 220, 711
GluI	GCNGC	8 cut(s)	55, 58, 61, 64, 67, 270, 273, 683
GsuI	CTGGAG	2 cut(s)	163, 647
HaeIII	GGCC	3 cut(s)	98, 272, 517
HapII	CCGG	3 cut(s)	101, 122, 578
HhaI	GCGC	3 cut(s)	45, 221, 712
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	241, 328, 463, 523, 598
Hin6I	GCGC	3 cut(s)	43, 219, 710
HinP1I	GCGC	3 cut(s)	43, 219, 710
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	3 cut(s)	101, 122, 578
Hpy166II	GTNNAC	2 cut(s)	178, 748
Hpy188I	TCNGA	4 cut(s)	75, 163, 340, 592
Hpy188III	TCNNGA	5 cut(s)	10, 247, 440, 466, 718
Hpy8I	GTNNAC	2 cut(s)	178, 748
Hpy99I	CGWCG	4 cut(s)	11, 34, 134, 227
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 60, 63, 66, 688
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	241, 328, 463, 523, 598
HspAI	GCGC	3 cut(s)	43, 219, 710
Ksp22I	TGATCA	1 cut(s)	462
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
LmnI	GCTCC	4 cut(s)	40, 144, 152, 269
Lsp1109I	GCAGC	6 cut(s)	66, 69, 72, 75, 78, 694
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	606
MalI	GATC	7 cut(s)	165, 185, 210, 381, 464, 488, 615
MboI	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
MboII	GAAGA	3 cut(s)	25, 577, 621
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	4 cut(s)	122, 149, 741, 786
MluCI	AATT	2 cut(s)	277, 713
MmeI	TCCRAC	1 cut(s)	53
MseI	TTAA	2 cut(s)	309, 582
MspA1I	CMGCKG	2 cut(s)	269, 685
MspI	CCGG	3 cut(s)	101, 122, 578
MspR9I	CCNGG	6 cut(s)	101, 122, 142, 261, 525, 770
MvaI	CCWGG	4 cut(s)	142, 261, 525, 770
MvnI	CGCG	4 cut(s)	45, 219, 269, 275
MwoI	GCNNNNNNNGC	5 cut(s)	51, 60, 63, 66, 688
NciI	CCSGG	2 cut(s)	101, 122
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
NlaIII	CATG	5 cut(s)	241, 328, 463, 523, 598
NlaIV	GGNNCC	4 cut(s)	99, 180, 265, 576
NotI	GCGGCCGC	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	26
PflMI	CCANNNNNTGG	2 cut(s)	141, 175
PfoI	TCCNGGA	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	577
PkrI	GCNGC	8 cut(s)	56, 59, 62, 65, 68, 271, 274, 684
Ple19I	CGATCG	1 cut(s)	186
Psp124BI	GAGCTC	3 cut(s)	149, 741, 786
Psp6I	CCWGG	4 cut(s)	140, 259, 523, 768
PspGI	CCWGG	4 cut(s)	140, 259, 523, 768
PspN4I	GGNNCC	4 cut(s)	99, 180, 265, 576
PspPI	GGNCC	4 cut(s)	97, 178, 516, 672
PsuI	RGATCY	1 cut(s)	379
PvuI	CGATCG	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	2 cut(s)	409, 775
RsaNI	GTAC	2 cut(s)	408, 774
SacI	GAGCTC	3 cut(s)	149, 741, 786
SacII	CCGCGG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	309, 582
SatI	GCNGC	8 cut(s)	55, 58, 61, 64, 67, 270, 273, 683
Sau3AI	GATC	7 cut(s)	163, 183, 208, 379, 462, 486, 613
Sau96I	GGNCC	4 cut(s)	97, 178, 516, 672
ScrFI	CCNGG	6 cut(s)	101, 122, 142, 261, 525, 770
SduI	GDGCHC	4 cut(s)	122, 149, 741, 786
SetI	ASST	9 cut(s)	149, 373, 435, 554, 677, 687, 709, 741, 786
SfaNI	GCATC	1 cut(s)	246
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	2 cut(s)	178, 672
SmlI	CTYRAG	2 cut(s)	383, 785
SmoI	CTYRAG	2 cut(s)	383, 785
Sse9I	AATT	2 cut(s)	277, 713
SsiI	CCGC	6 cut(s)	45, 92, 217, 267, 269, 273
SspMI	CTAG	1 cut(s)	606
SstI	GAGCTC	3 cut(s)	149, 741, 786
StyD4I	CCNGG	6 cut(s)	99, 120, 140, 259, 523, 768
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	9, 29, 207, 489
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	2 cut(s)	277, 713
TauI	GCSGC	2 cut(s)	272, 275
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	309, 582
Tru9I	TTAA	2 cut(s)	309, 582
TseI	GCWGC	6 cut(s)	54, 57, 60, 63, 66, 682
TspDTI	ATGAA	4 cut(s)	128, 410, 534, 611
TspGWI	ACGGA	1 cut(s)	47
Van91I	CCANNNNNTGG	2 cut(s)	141, 175
VpaK11BI	GGWCC	2 cut(s)	178, 672
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.