Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Forward (+)

1135732 .. 1136961

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1019600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTTCAACTGTGTTTTGCAAAATTTTCTTCACTTTCAGGATGGTATTTAGGGTTTAGACGACTACAAAGCCAGCTTTATGCTGGGCTTAGACTACTGGATATCAGAAAAATGGAGAAAATTGAGTCTTGGCTTATAATGTGCAGGGTGACCTCCAGAAACTTGTTCCCTAATAAGCATAGCTCTATGGATGGCCAATTTGTTCATCAAGTCATATGTTATACATTCTGCTTTTGCATTCCTGGCAAAGTTTCTGTGGAAGGTAAAGTGGATCACAAGTTTGATATGAAGCCCCACGGTACTAACATTGAGGAGTATGGGAAGCTGTGTCGTGAAAGGACAAACAAGTCCATGATCAAGAATAGACAAATACAGATGATCGATAATGACCGAGGAGTACTTATGAGGCCCATGCCTGGGATGATTGGCTTGGTTTCATCCACTTCAAAGGATAAGAAGAAAACTGCACCGGTTAAACAATCAGACATGAAAAGGACTAGAAGAGATCGTGGGGAGCTGGAGGATATAGTGTTCAAGTTATTTGAACAAAAACAACCAAACTGGACCTTGAAGCAGCTGGTGCAAGAAACCAATCAACCTGCGCAATTCTTGAAAGAGATACTGAATGAGCTGTGTGTGTACAACAAAAGGGGAACCAACCAGGGTACTTATGAGCTTAAGCCGGAATACAAGAAATCTGTCGAGGATACTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

240

Amino Acids

28.04

Weight (kDa)

9.43

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIF_beta	PF02270	167 - 231	3.1e-20	TFIIF, beta subunit HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AasI	GACNNNNNNGTC	1 cut(s)	346
Acc16I	TGCGCA	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	607
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	4 cut(s)	301, 399, 641, 667
AfiI	CCNNNNNNNGG	2 cut(s)	416, 417
AflII	CTTAAG	1 cut(s)	677
AgeI	ACCGGT	1 cut(s)	469
AgsI	TTSAA	6 cut(s)	8, 447, 535, 545, 571, 613
AjnI	CCWGG	3 cut(s)	241, 415, 660
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
AluBI	AGCT	7 cut(s)	76, 183, 325, 517, 577, 631, 676
AluI	AGCT	7 cut(s)	76, 183, 325, 517, 577, 631, 676
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	193, 407
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	1 cut(s)	23
AsiGI	ACCGGT	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	408, 564
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	2 cut(s)	36, 185
BciT130I	CCWGG	3 cut(s)	243, 417, 662
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	354
BfaI	CTAG	1 cut(s)	498
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
BmcAI	AGTACT	1 cut(s)	399
Bme1390I	CCNGG	3 cut(s)	243, 417, 662
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	2 cut(s)	408, 564
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	3 cut(s)	243, 417, 662
BpmI	CTGGAG	2 cut(s)	139, 539
Bsa29I	ATCGAT	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	295, 391, 416, 661
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 417
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	102, 566
BseBI	CCWGG	3 cut(s)	243, 417, 662
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	4 cut(s)	295, 391, 416, 661
BseGI	GGATG	4 cut(s)	47, 196, 426, 437
BseLI	CCNNNNNNNGG	2 cut(s)	416, 417
BseNI	ACTGG	2 cut(s)	102, 566
BseRI	GAGGAG	2 cut(s)	326, 408
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	163, 450
BshFI	GGCC	2 cut(s)	195, 409
BshTI	ACCGGT	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	470, 683
BslI	CCNNNNNNNGG	2 cut(s)	416, 417
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	195, 409
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	4 cut(s)	271, 354, 378, 505
BspANI	GGCC	2 cut(s)	195, 409
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	102, 566
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	4 cut(s)	295, 391, 416, 661
BssMI	GATC	4 cut(s)	271, 354, 378, 505
Bst2UI	CCWGG	3 cut(s)	243, 417, 662
Bst4CI	ACNGT	2 cut(s)	12, 299
Bst6I	CTCTTC	1 cut(s)	496
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstAUI	TGTACA	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	295
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	4 cut(s)	47, 196, 426, 437
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	4 cut(s)	274, 357, 381, 508
BstMBI	GATC	4 cut(s)	271, 354, 378, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 580
BstNI	CCWGG	3 cut(s)	243, 417, 662
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	241, 415, 660
BstV1I	GCAGC	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	2 cut(s)	195, 409
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	4 cut(s)	47, 196, 426, 437
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	408, 564
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	4 cut(s)	300, 398, 640, 666
CspAI	ACCGGT	1 cut(s)	469
CviAII	CATG	3 cut(s)	352, 412, 487
CviQI	GTAC	4 cut(s)	300, 398, 640, 666
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	273, 356, 380, 507
DpnII	GATC	4 cut(s)	271, 354, 378, 505
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	564
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	3 cut(s)	241, 415, 660
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	3 cut(s)	355, 415, 490
FatI	CATG	3 cut(s)	351, 411, 486
FauNDI	CATATG	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	4 cut(s)	54, 203, 424, 433
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	1 cut(s)	498
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	575
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	2 cut(s)	139, 539
HaeIII	GGCC	2 cut(s)	195, 409
HapII	CCGG	2 cut(s)	470, 683
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	3 cut(s)	355, 415, 490
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	470, 683
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	2 cut(s)	107, 484
Hpy188III	TCNNGA	5 cut(s)	39, 156, 332, 358, 610
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	12, 299
HpyCH4V	TGCA	5 cut(s)	20, 144, 237, 467, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 580
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	355, 415, 490
HspAI	GCGC	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	271, 354, 378, 505
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	4 cut(s)	273, 356, 380, 507
MboI	GATC	4 cut(s)	271, 354, 378, 505
MboII	GAAGA	3 cut(s)	21, 469, 513
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	4 cut(s)	23, 120, 197, 605
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	163, 304, 386, 399, 514, 697
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	474, 678
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	577
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	470, 683
MspR9I	CCNGG	3 cut(s)	243, 417, 662
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	3 cut(s)	243, 417, 662
MwoI	GCNNNNNNNGC	2 cut(s)	243, 580
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	4 cut(s)	271, 354, 378, 505
NlaIII	CATG	3 cut(s)	355, 415, 490
NlaIV	GGNNCC	1 cut(s)	655
NmuCI	GTSAC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	603
PctI	GAATGC	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	3 cut(s)	241, 415, 660
PspEI	GGTNACC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	3 cut(s)	241, 415, 660
PspN4I	GGNNCC	1 cut(s)	655
PspPI	GGNCC	2 cut(s)	408, 564
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	4 cut(s)	301, 399, 641, 667
RsaNI	GTAC	4 cut(s)	300, 398, 640, 666
SaqAI	TTAA	2 cut(s)	474, 678
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	4 cut(s)	271, 354, 378, 505
Sau96I	GGNCC	2 cut(s)	408, 564
ScaI	AGTACT	1 cut(s)	399
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	243, 417, 662
SinI	GGWCC	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	4 cut(s)	23, 120, 197, 605
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	241, 415, 660
TaaI	ACNGT	2 cut(s)	12, 299
TaqI	TCGA	2 cut(s)	381, 702
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	4 cut(s)	23, 120, 197, 605
TatI	WGTACW	2 cut(s)	397, 639
Tru1I	TTAA	2 cut(s)	474, 678
Tru9I	TTAA	2 cut(s)	474, 678
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	574
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	194, 302, 426, 503
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.