Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006892.1

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Reverse (-)

35409 .. 35911

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006892.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgcagatagaaatcttgggttcagatatgatgggtgatgataagaagaaacctgtaccggttaaacaatcagatgtcaaaaggactagaagggatcgtggggaactggaggatataatgttcaagttatttgaaagacaaccaaattgggcattgaagcagcttgtgcaagagactgatcaacctgcgcaattcttgaaagagatactaaatgagctctgtgtatacaacaaaaggggaaccaaccagggtacttatgagcttaagccagagtacaagaaatctgttgatgatacacctgcagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

102

Amino Acids

11.96

Weight (kDa)

5.6

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	3 cut(s)	57, 253, 275
AflII	CTTAAG	1 cut(s)	263
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	124, 134, 157, 199
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	163, 217, 262
AluI	AGCT	3 cut(s)	163, 217, 262
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	160
AsiGI	ACCGGT	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	94, 178
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	102
BspTI	CTTAAG	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	94, 178
BssNAI	GTATAC	1 cut(s)	226
Bst1107I	GTATAC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	97, 181
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	94, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	56, 252, 274
CspAI	ACCGGT	1 cut(s)	58
CviJI	RGCY	4 cut(s)	163, 217, 262, 268
CviKI_1	RGCY	4 cut(s)	163, 217, 262, 268
CviQI	GTAC	3 cut(s)	56, 252, 274
DpnI	GATC	2 cut(s)	96, 180
DpnII	GATC	2 cut(s)	94, 178
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	219
FaiI	YATR	4 cut(s)	29, 116, 226, 258
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	87
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	128
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	25, 73
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	4, 169, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	94, 178
LpnPI	CCDG	7 cut(s)	66, 72, 92, 198, 233, 260, 282
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	87
MalI	GATC	2 cut(s)	96, 180
MboI	GATC	2 cut(s)	94, 178
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	145, 191
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	63, 264
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	94, 178
NlaIV	GGNNCC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	304
RsaI	GTAC	3 cut(s)	57, 253, 275
RsaNI	GTAC	3 cut(s)	56, 252, 274
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	63, 264
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	94, 178
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	55, 165, 187, 219, 264, 301
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	145, 191
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	246
TasI	AATT	2 cut(s)	145, 191
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	63, 264
Tru9I	TTAA	2 cut(s)	63, 264
TseI	GCWGC	1 cut(s)	160
Vha464I	CTTAAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.