FvH4_2g39470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017253
Physical Location & Seq
Reverse (-)
28352451 .. 28353664
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39470.t1

Sequence Viewer

Length: 795 bp
ATGGATTCACAGAGAGTCGTCGACTTCGACAGTGTCAAGGCCGAGAAAGTCAATGCCATGAGGCGTTACATGTGGCGCCAGAACCTCCGGTGGTTGTTGAAGGCGTGTTTGCCACTCGCGCCGCTCTCTTACGCGCTCTGCCTCGACGCTCCCCGCCAACTCCTTATTGCCGTTTTCAACAGCAACCTCTGCGTCTTCCTGCTTCTCAATGCCTTGGTTGTCGTCACGTGCGTTTTGTCCGGTGAAAACAACAACTCCGGAGGAGGAGTTGCGGAGCGCGATATTTACGGCGAGTACGTCGCTAACGTGGAGTCTGCTCGCCGGAGTGGCCGCAAGGAGTGTGAGTTAGTCACTCCGGAAGCGGAGGAGGATTTAGTGAAGGGCAAAGAAGTCGGATGCTTTGTTTCTCGCCGGAGTATGGTTGCCGGATTTGAAACAGAGACGACTACGTTGCCGGAGGAAGTATCAAACTTGAAAGGAACTGAATCCTATGAGAATGTGAATGTGGAATCTCTGCCGGTTTGTGAAGACAAAGCGGTTACTGAATGTAAAACTGTGGTCTCTCCGGTTTCCGCAGTTACTACAAATACTAGTGGTTGTGGTGAGGAACGCGAAAAGGTGAAGAGTTACCGGAGGACACAATCGGAGAGTTTCGAGAAGGAGAGAAGAAAGCCTAAGAAGGGTTTGGAGAGATCGGTAACAGAGATGCACAGGAAAACTGAGCCGGAGAGTCGGAGCTCGGTGGAGGACTTGTCCGATGAGGAGTTCCAGCGGCAGGTTGAAGCTTATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.69

Weight (kDa)

5.33

Isoelectric Point (pI)

65.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 21
AccII CGCG 4 cut(s) 119, 134, 279, 612
AccIII TCCGGA 2 cut(s) 257, 355
AciI CCGC 8 cut(s) 122, 154, 272, 331, 362, 536, 573, 772
AcoI YGGCCR 1 cut(s) 328
AcvI CACGTG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 418, 680, 775
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 5 cut(s) 100, 178, 434, 475, 782
AhlI ACTAGT 1 cut(s) 590
AluBI AGCT 2 cut(s) 738, 785
AluI AGCT 2 cut(s) 738, 785
Alw21I GWGCWC 1 cut(s) 740
Alw26I GTCTC 2 cut(s) 434, 565
Aor13HI TCCGGA 2 cut(s) 257, 355
AoxI GGCC 2 cut(s) 39, 328
AspLEI GCGC 4 cut(s) 78, 121, 136, 279
AsuHPI GGTGA 3 cut(s) 254, 614, 631
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 740
BbrPI CACGTG 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 187, 534
Bbv12I GWGCWC 1 cut(s) 740
BceAI ACGGC 2 cut(s) 155, 304
BcgI CGANNNNNNTGC 4 cut(s) 373, 407, 433, 467
BcoDI GTCTC 2 cut(s) 434, 565
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 766
BglI GCCNNNNNGGC 1 cut(s) 327
BisI GCNGC 3 cut(s) 122, 331, 773
BlsI GCNGC 3 cut(s) 123, 332, 774
BmiI GGNNCC 1 cut(s) 77
BmsI GCATC 2 cut(s) 386, 696
BpiI GAAGAC 2 cut(s) 187, 534
BsaAI YACGTR 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 6 cut(s) 87, 239, 257, 355, 565, 630
BsaXI ACNNNNNCTCC 8 cut(s) 239, 252, 269, 282, 329, 359, 737, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 680, 775
Bse118I RCCGGY 1 cut(s) 517
BseAI TCCGGA 2 cut(s) 257, 355
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 3 cut(s) 418, 680, 775
BseMII CTCAG 1 cut(s) 711
BseRI GAGGAG 4 cut(s) 276, 279, 380, 776
Bsh1236I CGCG 4 cut(s) 119, 134, 279, 612
BshFI GGCC 2 cut(s) 41, 330
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 740
BslI CCNNNNNNNGG 3 cut(s) 418, 680, 775
BsmAI GTCTC 2 cut(s) 434, 565
BsmBI CGTCTC 1 cut(s) 434
BsnI GGCC 2 cut(s) 41, 330
Bso31I GGTCTC 1 cut(s) 565
Bsp1286I GDGCHC 1 cut(s) 740
Bsp13I TCCGGA 2 cut(s) 257, 355
Bsp143I GATC 1 cut(s) 692
BspACI CCGC 8 cut(s) 122, 154, 272, 331, 362, 536, 573, 772
BspANI GGCC 2 cut(s) 41, 330
BspCNI CTCAG 1 cut(s) 712
BspEI TCCGGA 2 cut(s) 257, 355
BspFNI CGCG 4 cut(s) 119, 134, 279, 612
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 565
BsrBI CCGCTC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 692
BssNI GRCGYC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 32, 556
Bst6I CTCTTC 1 cut(s) 617
BstACI GRCGYC 1 cut(s) 76
BstAPI GCANNNNNTGC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 675, 720
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 4 cut(s) 119, 134, 279, 612
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 4 cut(s) 78, 121, 136, 279
BstKTI GATC 1 cut(s) 695
BstMAI GTCTC 2 cut(s) 434, 565
BstMBI GATC 1 cut(s) 692
BstMWI GCNNNNNNNGC 3 cut(s) 118, 189, 327
BstNSI RCATGY 1 cut(s) 73
BstUI CGCG 4 cut(s) 119, 134, 279, 612
BstV2I GAAGAC 2 cut(s) 187, 534
BsuRI GGCC 2 cut(s) 41, 330
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 4 cut(s) 78, 121, 136, 279
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 2 cut(s) 155, 181
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 58, 70
CviJI RGCY 6 cut(s) 41, 330, 673, 724, 738, 785
CviKI_1 RGCY 6 cut(s) 41, 330, 673, 724, 738, 785
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 675, 720
DinI GGCGCC 1 cut(s) 77
DpnI GATC 1 cut(s) 694
DpnII GATC 1 cut(s) 692
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Ecl136II GAGCTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 740
Eco31I GGTCTC 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 738
Eco72I CACGTG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 740
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 2 cut(s) 61, 73
FaiI YATR 4 cut(s) 59, 71, 419, 492
FatI CATG 2 cut(s) 57, 69
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 122, 331, 773
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 3 cut(s) 122, 331, 773
FspBI CTAG 1 cut(s) 591
GlaI GCGC 4 cut(s) 77, 120, 135, 278
GluI GCNGC 3 cut(s) 122, 331, 773
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 41, 330
HgaI GACGC 2 cut(s) 155, 181
HhaI GCGC 4 cut(s) 78, 121, 136, 279
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 2 cut(s) 61, 73
Hin6I GCGC 4 cut(s) 76, 119, 134, 277
HinP1I GCGC 4 cut(s) 76, 119, 134, 277
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 6 cut(s) 5, 15, 311, 485, 509, 730
HphI GGTGA 3 cut(s) 254, 614, 631
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 395, 646, 735, 757
Hpy188III TCNNGA 3 cut(s) 258, 356, 655
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 3 cut(s) 23, 149, 302
HpyAV CCTTC 4 cut(s) 94, 373, 652, 673
HpyCH4III ACNGT 2 cut(s) 32, 556
HpyCH4IV ACGT 4 cut(s) 227, 297, 306, 449
HpyCH4V TGCA 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 189, 327
HpyF3I CTNAG 2 cut(s) 675, 720
HpySE526I ACGT 4 cut(s) 227, 297, 306, 449
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 2 cut(s) 61, 73
HspAI GCGC 4 cut(s) 76, 119, 134, 277
KasI GGCGCC 1 cut(s) 75
Kpn2I TCCGGA 2 cut(s) 257, 355
Kzo9I GATC 1 cut(s) 692
LmnI GCTCC 3 cut(s) 154, 274, 735
LweI GCATC 2 cut(s) 386, 696
MaeI CTAG 1 cut(s) 591
MaeII ACGT 4 cut(s) 227, 297, 306, 449
MaeIII GTNAC 7 cut(s) 65, 223, 349, 538, 577, 626, 697
MalI GATC 1 cut(s) 694
MbiI CCGCTC 1 cut(s) 124
MboI GATC 1 cut(s) 692
MboII GAAGA 4 cut(s) 187, 539, 634, 678
MhlI GDGCHC 1 cut(s) 740
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 3 cut(s) 24, 320, 739
MmeI TCCRAC 2 cut(s) 373, 713
MroI TCCGGA 2 cut(s) 257, 355
MseI TTAA 1 cut(s) 793
MspA1I CMGCKG 1 cut(s) 772
MvnI CGCG 4 cut(s) 119, 134, 279, 612
MwoI GCNNNNNNNGC 3 cut(s) 118, 189, 327
NarI GGCGCC 1 cut(s) 76
NdeII GATC 1 cut(s) 692
NlaIII CATG 2 cut(s) 61, 73
NlaIV GGNNCC 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 223, 349
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 4 cut(s) 24, 228, 294, 303
PfeI GAWTC 3 cut(s) 5, 485, 509
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 123, 332, 774
PleI GAGTC 3 cut(s) 23, 319, 738
PluTI GGCGCC 1 cut(s) 79
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 3 cut(s) 23, 319, 738
Ppu21I YACGTR 1 cut(s) 228
PscI ACATGT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 740
PspCI CACGTG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SacI GAGCTC 1 cut(s) 740
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 793
SatI GCNGC 3 cut(s) 122, 331, 773
Sau3AI GATC 1 cut(s) 692
SchI GAGTC 3 cut(s) 24, 320, 739
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 2 cut(s) 386, 696
SfoI GGCGCC 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 590
SsiI CCGC 8 cut(s) 122, 154, 272, 331, 362, 536, 573, 772
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 740
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 32, 556
TaiI ACGT 4 cut(s) 230, 300, 309, 452
TaqI TCGA 4 cut(s) 21, 27, 144, 654
TauI GCSGC 3 cut(s) 124, 333, 775
TfiI GAWTC 3 cut(s) 5, 485, 509
Tru1I TTAA 1 cut(s) 793
Tru9I TTAA 1 cut(s) 793
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 223, 349
Tsp45I GTSAC 2 cut(s) 223, 349
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 32
XceI RCATGY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.