Rroxscaffold_7G00166760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017253
Physical Location & Seq
Reverse (-)
8136606 .. 8138238
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166760.1

Sequence Viewer

Length: 810 bp
ATGCATCAAGTTACTACAGGGGTCTACAGCTGTCAAGGCCGAGAAAGCCAATGCCATGAGACGTTACCGGTGGCGCCAGAACCTCCGGTGGCTGTGGAAGGCGTGTCTGCTAGTCGCGCCGCTCTCTTACGCGCTCTGCCGCGACGCGCCCCGCCAACTCCTTATCGCCGTTTTCAACAGCAACCTCTGCGTTTTTTGCTTCTTAATGCCTTGGTTGTCGTCACGTGTGTTTTGTCCGGCGAAACCGTCGCTGGCAGCGACAAGTCCGGAGGAGTTACGGAGAACGATATTTACGGCGAGTACGTTGCCAACGTGGAGTCTACTCGTCGGAGTGACCCTGTCGCCGGATTCAAGGGGTCTGAGTTGGTCAATCCCGAGGCGGAGGAGGGTTTAGCGAAGGAGAAAGAAATTGGATGTTTCGTTTCTCGCCGGAGTATGGTCGCCGGATATGAGTCTCCGGCGGAAACTGAGAAGGATATTTGGCCGGAGGAAGTTTCAAACTTCCAAGGAACCGAATCCTATGAGAATGTGAATGTGGAATCTCTACTGCCGGTTTGTGAAGACAAAGCGGTTACTGAATGTAAAATTGTGCTCTCTCCAGTTTCTGCAGTTACTACAAATACTAGTGGTTGTGGTGAGGAAAGCGAAACGGTGAAGAGTTACCGGAGGACACAATCGGAGAGTTTTGAGAAGAAGAGGAAGAAGCCTAAGAGGGGTTTGCAGCGATCGAAAACAAAGATGGATGACTTGTCCGCTGAGGAGTTCCAACGCCAGATTGAGCTCTTCATTAGCAGTCATTACCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.76

Weight (kDa)

5.51

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 2 cut(s) 24, 320
AccII CGCG 4 cut(s) 117, 132, 142, 147
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 8 cut(s) 120, 140, 152, 380, 461, 569, 753, 802
AcoI YGGCCR 1 cut(s) 482
AcvI CACGTG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 344, 436, 713
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 3 cut(s) 176, 352, 498
AhlI ACTAGT 1 cut(s) 623
AluBI AGCT 2 cut(s) 30, 781
AluI AGCT 2 cut(s) 30, 781
Alw21I GWGCWC 2 cut(s) 594, 783
Alw26I GTCTC 2 cut(s) 53, 459
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 2 cut(s) 37, 482
ApeKI GCWGC 2 cut(s) 255, 721
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 4 cut(s) 76, 119, 134, 149
AsuHPI GGTGA 2 cut(s) 647, 664
AvaI CYCGRG 1 cut(s) 374
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 783
BbrPI CACGTG 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 594, 783
BbvCI CCTCAGC 1 cut(s) 756
BbvI GCAGC 2 cut(s) 267, 733
BccI CCATC 1 cut(s) 733
BceAI ACGGC 2 cut(s) 153, 310
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 2 cut(s) 53, 459
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 2 cut(s) 111, 624
BfmI CTRYAG 3 cut(s) 15, 25, 606
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 4 cut(s) 120, 140, 256, 722
BlsI GCNGC 4 cut(s) 121, 141, 257, 723
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 75, 511
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 756
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 210, 375, 505
BsaWI WCCGGW 4 cut(s) 67, 85, 266, 663
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 436, 713
Bse118I RCCGGY 2 cut(s) 67, 550
Bse1I ACTGG 1 cut(s) 599
BseAI TCCGGA 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 210, 375, 505
BseGI GGATG 2 cut(s) 419, 748
BseLI CCNNNNNNNGG 3 cut(s) 344, 436, 713
BseMII CTCAG 3 cut(s) 351, 459, 747
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 3 cut(s) 285, 398, 773
BseXI GCAGC 2 cut(s) 267, 733
Bsh1236I CGCG 4 cut(s) 117, 132, 142, 147
Bsh1285I CGRYCG 1 cut(s) 728
BshFI GGCC 2 cut(s) 39, 484
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 728
BsiHKAI GWGCWC 2 cut(s) 594, 783
BsiHKCI CYCGRG 1 cut(s) 374
BslI CCNNNNNNNGG 3 cut(s) 344, 436, 713
BsmAI GTCTC 2 cut(s) 53, 459
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 2 cut(s) 39, 484
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 594, 783
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 1 cut(s) 725
BspACI CCGC 8 cut(s) 120, 140, 152, 380, 461, 569, 753, 802
BspANI GGCC 2 cut(s) 39, 484
BspCNI CTCAG 3 cut(s) 352, 460, 748
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 4 cut(s) 117, 132, 142, 147
BspLI GGNNCC 2 cut(s) 75, 511
BspMAI CTGCAG 1 cut(s) 610
BspQI GCTCTTC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 67, 550
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 2 cut(s) 67, 550
BssECI CCNNGG 3 cut(s) 210, 375, 505
BssMI GATC 1 cut(s) 725
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 210, 505
Bst4CI ACNGT 2 cut(s) 247, 652
Bst6I CTCTTC 3 cut(s) 650, 689, 788
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 360, 468, 708, 756
BstF5I GGATG 2 cut(s) 419, 748
BstFNI CGCG 4 cut(s) 117, 132, 142, 147
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 4 cut(s) 76, 119, 134, 149
BstKTI GATC 1 cut(s) 728
BstMAI GTCTC 2 cut(s) 53, 459
BstMBI GATC 1 cut(s) 725
BstMCI CGRYCG 1 cut(s) 728
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 116, 187, 196
BstSFI CTRYAG 3 cut(s) 15, 25, 606
BstUI CGCG 4 cut(s) 117, 132, 142, 147
BstV1I GCAGC 2 cut(s) 267, 733
BstV2I GAAGAC 1 cut(s) 567
BsuRI GGCC 2 cut(s) 39, 484
BtsCI GGATG 2 cut(s) 419, 748
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 4 cut(s) 76, 119, 134, 149
Cfr10I RCCGGY 2 cut(s) 67, 550
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 301
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 1 cut(s) 56
CviJI RGCY 7 cut(s) 30, 39, 48, 92, 484, 706, 781
CviKI_1 RGCY 7 cut(s) 30, 39, 48, 92, 484, 706, 781
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 4 cut(s) 360, 468, 708, 756
DinI GGCGCC 1 cut(s) 75
DpnI GATC 1 cut(s) 727
DpnII GATC 1 cut(s) 725
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 3 cut(s) 650, 689, 788
EarI CTCTTC 3 cut(s) 650, 689, 788
EciI GGCGGA 2 cut(s) 395, 476
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 2 cut(s) 210, 505
Eco24I GRGCYC 1 cut(s) 783
Eco53kI GAGCTC 1 cut(s) 781
Eco72I CACGTG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 210, 505
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 783
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 210, 505
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 57, 437, 450, 522
FatI CATG 1 cut(s) 55
FauI CCCGC 1 cut(s) 159
FblI GTMKAC 2 cut(s) 24, 320
Fnu4HI GCNGC 4 cut(s) 120, 140, 256, 722
FokI GGATG 2 cut(s) 426, 755
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 4 cut(s) 120, 140, 256, 722
FspBI CTAG 2 cut(s) 111, 624
GlaI GCGC 4 cut(s) 75, 118, 133, 148
GluI GCNGC 4 cut(s) 120, 140, 256, 722
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 2 cut(s) 39, 484
HgaI GACGC 1 cut(s) 153
HhaI GCGC 4 cut(s) 76, 119, 134, 149
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 4 cut(s) 74, 117, 132, 147
HinP1I GCGC 4 cut(s) 74, 117, 132, 147
HinfI GANTC 5 cut(s) 317, 348, 452, 515, 539
HphI GGTGA 2 cut(s) 647, 664
Hpy166II GTNNAC 2 cut(s) 25, 321
Hpy188I TCNGA 3 cut(s) 330, 361, 679
Hpy188III TCNNGA 2 cut(s) 267, 374
Hpy8I GTNNAC 2 cut(s) 25, 321
Hpy99I CGWCG 3 cut(s) 147, 251, 330
HpyAV CCTTC 3 cut(s) 92, 391, 466
HpyCH4III ACNGT 2 cut(s) 247, 652
HpyCH4IV ACGT 4 cut(s) 62, 224, 303, 312
HpyCH4V TGCA 3 cut(s) 4, 608, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 116, 187, 196
HpyF3I CTNAG 4 cut(s) 360, 468, 708, 756
HpySE526I ACGT 4 cut(s) 62, 224, 303, 312
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 4 cut(s) 74, 117, 132, 147
KasI GGCGCC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 266
Kzo9I GATC 1 cut(s) 725
LguI GCTCTTC 1 cut(s) 788
Lsp1109I GCAGC 2 cut(s) 267, 733
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 111, 624
MaeII ACGT 4 cut(s) 62, 224, 303, 312
MaeIII GTNAC 8 cut(s) 10, 63, 220, 274, 332, 571, 610, 659
MalI GATC 1 cut(s) 727
MbiI CCGCTC 1 cut(s) 122
MboI GATC 1 cut(s) 725
MboII GAAGA 6 cut(s) 572, 667, 703, 706, 712, 775
MhlI GDGCHC 2 cut(s) 594, 783
MluCI AATT 2 cut(s) 408, 585
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 2 cut(s) 326, 461
MmeI TCCRAC 2 cut(s) 308, 790
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 266
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 30, 755
MvnI CGCG 4 cut(s) 117, 132, 142, 147
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 116, 187, 196
NarI GGCGCC 1 cut(s) 74
NdeII GATC 1 cut(s) 725
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 75, 511
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 220, 332
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 3 cut(s) 255, 300, 309
PfeI GAWTC 3 cut(s) 348, 515, 539
PflFI GACNNNGTC 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 4 cut(s) 121, 141, 257, 723
Ple19I CGATCG 1 cut(s) 728
PleI GAGTC 2 cut(s) 325, 460
PluTI GGCGCC 1 cut(s) 77
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
PpsI GAGTC 2 cut(s) 325, 460
Ppu21I YACGTR 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 783
PspCI CACGTG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 75, 511
PsrI GAACNNNNNNTAC 2 cut(s) 275, 307
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 605
PsyI GACNNNGTC 1 cut(s) 338
PvuI CGATCG 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 788
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 120, 140, 256, 722
Sau3AI GATC 1 cut(s) 725
SchI GAGTC 2 cut(s) 326, 461
SduI GDGCHC 2 cut(s) 594, 783
SetI ASST 8 cut(s) 32, 65, 85, 187, 227, 306, 315, 783
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 3 cut(s) 15, 25, 606
SfoI GGCGCC 1 cut(s) 75
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 2 cut(s) 408, 585
SsiI CCGC 8 cut(s) 120, 140, 152, 380, 461, 569, 753, 802
SspDI GGCGCC 1 cut(s) 73
SspMI CTAG 2 cut(s) 111, 624
SstI GAGCTC 1 cut(s) 783
StyI CCWWGG 2 cut(s) 210, 505
TaaI ACNGT 2 cut(s) 247, 652
TaiI ACGT 4 cut(s) 65, 227, 306, 315
TaqI TCGA 1 cut(s) 728
TasI AATT 2 cut(s) 408, 585
TauI GCSGC 2 cut(s) 122, 142
TfiI GAWTC 3 cut(s) 348, 515, 539
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 2 cut(s) 220, 332
TseI GCWGC 2 cut(s) 255, 721
Tsp45I GTSAC 2 cut(s) 220, 332
TspDTI ATGAA 1 cut(s) 775
TspGWI ACGGA 1 cut(s) 293
Tth111I GACNNNGTC 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 24, 320
XspI CTAG 2 cut(s) 111, 624
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.