pycom15g02020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017253
Physical Location & Seq
Reverse (-)
1196036 .. 1196920
885 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02020.1

Sequence Viewer

Length: 885 bp
ATGGATACTTACAAACCGGCGTTCGATTACGTGGCGGCGGAGAAAGCCATTGCCATGCGTAAGTACCGCTGCCACCAGAACTTCAAGTCCGTTCTGACGGTGTGCGCCGCCGTCTCTCCTCTCATCTTCGCTCTCTGCCGCTCTCTTCCGTCCGCATCCAAACTCTCCAGCGTCATTTCCAGCCAAGTCCACGCAGTCTTTGACAACCAGTTGTACGTTTTCACGCTCGTCATGGCGCTCCTCGCCGCCATCTACGCTCTGGCCCGCCAACATGACGAAGAATCCGCCCGATCACCGGATATCTACGAGGAGTTTGCCGTCAACAGAGTGTATTGCCGGAGCGTCGTGGTTAACGACGAAGATAACGGTGGTGTGTGTTCAGAAACAGAGAAGAAGCCTTCTTTTCCAGAAACAGAGTCGAAGGCAAATGAGGAGTCTAAGAATGCAGTGGTGCCATTTCCGCCGGTTAACGGCCGCGAAACGTTTACAGAAACGGAAACTCATTACGTCCCTCCGGTTATTACAATTACTACGGAGAGTGCTGACGTGGCATTGGTGGAGAAGGAGAAGCGGTACATGACAACACAATCGGAGGGTTTTGGGAAGAAGAAGATAAGTAGTACTACAAGAATTATGCGACGATCGGAGACGGAGATTTACCGGAAAAATAAGAGTTGCGGCGAGGAAGAGGTGGCGAGGCGGTCGGGGTCCGTGGAGGTGCTGGACAACGAGGAGTTCAACCGGAAAATACAGAAATTCATTGAAGATATGAAGCAGACTCAGAAGGAAGAGAAAAGGCAAGAGGAAGAAGATGAAAGGAGAAGGAGAAGAGCAGAGGGAAATTACGTTCGCATGGCTTCTTTTACCTCTTCAGTAATTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.55

Weight (kDa)

6.3

Isoelectric Point (pI)

74.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 1 cut(s) 477
AclI AACGTT 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 4 cut(s) 65, 215, 575, 622
AfiI CCNNNNNNNGG 2 cut(s) 295, 470
AgsI TTSAA 3 cut(s) 85, 739, 764
AjiI CACGTC 1 cut(s) 547
AloI GAACNNNNNNTCC 4 cut(s) 71, 103, 831, 863
Alw26I GTCTC 2 cut(s) 118, 641
AoxI GGCC 2 cut(s) 261, 472
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 755
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AspLEI GCGC 2 cut(s) 107, 238
AspS9I GGNCC 2 cut(s) 262, 708
AsuHPI GGTGA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 708
BanI GGYRCC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 257
BceAI ACGGC 3 cut(s) 95, 302, 487
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BcoDI GTCTC 2 cut(s) 118, 641
BfoI RGCGCY 1 cut(s) 239
BisI GCNGC 7 cut(s) 36, 70, 108, 139, 246, 475, 679
BlsI GCNGC 7 cut(s) 37, 71, 109, 140, 247, 476, 680
BmcAI AGTACT 1 cut(s) 622
Bme18I GGWCC 1 cut(s) 708
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 262, 708
BmiI GGNNCC 2 cut(s) 453, 709
BmsI GCATC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 4 cut(s) 295, 514, 660, 741
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 470
Bse118I RCCGGY 2 cut(s) 16, 463
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 295, 470
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 5 cut(s) 108, 230, 323, 446, 746
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 477
Bsh1285I CGRYCG 3 cut(s) 475, 644, 704
BshFI GGCC 2 cut(s) 263, 474
BshNI GGYRCC 1 cut(s) 451
BsiEI CGRYCG 3 cut(s) 475, 644, 704
BsiSI CCGG 7 cut(s) 17, 296, 337, 464, 515, 661, 742
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 295, 470
BsmAI GTCTC 2 cut(s) 118, 641
BsmBI CGTCTC 2 cut(s) 118, 641
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 2 cut(s) 263, 474
Bsp143I GATC 2 cut(s) 290, 641
BspANI GGCC 2 cut(s) 263, 474
BspCNI CTCAG 1 cut(s) 793
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 453, 709
BspQI GCTCTTC 1 cut(s) 823
BspT107I GGYRCC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 2 cut(s) 16, 463
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 2 cut(s) 16, 463
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 2 cut(s) 290, 641
Bst4CI ACNGT 2 cut(s) 100, 368
Bst6I CTCTTC 5 cut(s) 150, 681, 783, 823, 874
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 438, 780
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 2 cut(s) 107, 238
BstKTI GATC 2 cut(s) 293, 644
BstMAI GTCTC 2 cut(s) 118, 641
BstMBI GATC 2 cut(s) 290, 641
BstMCI CGRYCG 3 cut(s) 475, 644, 704
BstMWI GCNNNNNNNGC 5 cut(s) 44, 242, 254, 460, 548
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 472
BsuRI GGCC 2 cut(s) 263, 474
BtgI CCRYGG 1 cut(s) 711
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 453, 880
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 107, 238
Cfr10I RCCGGY 2 cut(s) 16, 463
Cfr13I GGNCC 2 cut(s) 262, 708
CseI GACGC 2 cut(s) 160, 331
Csp6I GTAC 4 cut(s) 64, 214, 574, 621
CviAII CATG 5 cut(s) 55, 232, 272, 577, 853
CviJI RGCY 6 cut(s) 47, 183, 263, 397, 474, 857
CviKI_1 RGCY 6 cut(s) 47, 183, 263, 397, 474, 857
CviQI GTAC 4 cut(s) 64, 214, 574, 621
DdeI CTNAG 2 cut(s) 438, 780
DpnI GATC 2 cut(s) 292, 643
DpnII GATC 2 cut(s) 290, 641
EaeI YGGCCR 1 cut(s) 472
EagI CGGCCG 1 cut(s) 472
Eam1104I CTCTTC 5 cut(s) 150, 681, 783, 823, 874
EarI CTCTTC 5 cut(s) 150, 681, 783, 823, 874
EciI GGCGGA 3 cut(s) 53, 274, 450
EclXI CGGCCG 1 cut(s) 472
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 708
Eco52I CGGCCG 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 855
EcoRV GATATC 1 cut(s) 301
Esp3I CGTCTC 2 cut(s) 118, 641
FaeI CATG 5 cut(s) 58, 235, 275, 580, 856
FaiI YATR 7 cut(s) 56, 233, 273, 578, 635, 770, 854
FaqI GGGAC 1 cut(s) 494
FatI CATG 5 cut(s) 54, 231, 271, 576, 852
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 7 cut(s) 36, 70, 108, 139, 246, 475, 679
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 7 cut(s) 36, 70, 108, 139, 246, 475, 679
GlaI GCGC 2 cut(s) 106, 237
GluI GCNGC 7 cut(s) 36, 70, 108, 139, 246, 475, 679
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 2 cut(s) 263, 474
HapII CCGG 7 cut(s) 17, 296, 337, 464, 515, 661, 742
HgaI GACGC 2 cut(s) 160, 331
HhaI GCGC 2 cut(s) 107, 238
Hin1II CATG 5 cut(s) 58, 235, 275, 580, 856
Hin6I GCGC 2 cut(s) 105, 236
HinP1I GCGC 2 cut(s) 105, 236
HincII GTYRAC 3 cut(s) 322, 352, 469
HindII GTYRAC 3 cut(s) 322, 352, 469
HinfI GANTC 4 cut(s) 281, 416, 434, 778
HpaI GTTAAC 2 cut(s) 352, 469
HpaII CCGG 7 cut(s) 17, 296, 337, 464, 515, 661, 742
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 5 cut(s) 190, 322, 352, 469, 486
Hpy188I TCNGA 5 cut(s) 96, 382, 592, 646, 783
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 5 cut(s) 190, 322, 352, 469, 486
Hpy99I CGWCG 3 cut(s) 347, 359, 642
HpyAV CCTTC 5 cut(s) 408, 415, 556, 778, 816
HpyCH4III ACNGT 2 cut(s) 100, 368
HpyCH4IV ACGT 6 cut(s) 30, 216, 482, 507, 546, 846
HpyCH4V TGCA 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 242, 254, 460, 548
HpyF3I CTNAG 2 cut(s) 438, 780
HpySE526I ACGT 6 cut(s) 30, 216, 482, 507, 546, 846
Hsp92II CATG 5 cut(s) 58, 235, 275, 580, 856
HspAI GCGC 2 cut(s) 105, 236
KspAI GTTAAC 2 cut(s) 352, 469
Kzo9I GATC 2 cut(s) 290, 641
LguI GCTCTTC 1 cut(s) 823
LmnI GCTCC 2 cut(s) 243, 339
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 164
MaeII ACGT 6 cut(s) 30, 216, 482, 507, 546, 846
MalI GATC 2 cut(s) 292, 643
MbiI CCGCTC 1 cut(s) 141
MboI GATC 2 cut(s) 290, 641
MluCI AATT 5 cut(s) 525, 630, 755, 841, 876
MlyI GAGTC 3 cut(s) 425, 443, 772
MseI TTAA 2 cut(s) 351, 468
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 7 cut(s) 17, 296, 337, 464, 515, 661, 742
Mva1269I GAATGC 1 cut(s) 448
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 5 cut(s) 44, 242, 254, 460, 548
NdeII GATC 2 cut(s) 290, 641
NlaIII CATG 5 cut(s) 58, 235, 275, 580, 856
NlaIV GGNNCC 2 cut(s) 453, 709
PciSI GCTCTTC 1 cut(s) 823
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 7 cut(s) 37, 71, 109, 140, 247, 476, 680
Ple19I CGATCG 1 cut(s) 644
PleI GAGTC 3 cut(s) 424, 442, 772
PpsI GAGTC 3 cut(s) 424, 442, 772
Ppu21I YACGTR 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 453, 709
PspPI GGNCC 2 cut(s) 262, 708
PvuI CGATCG 1 cut(s) 644
RsaI GTAC 4 cut(s) 65, 215, 575, 622
RsaNI GTAC 4 cut(s) 64, 214, 574, 621
RseI CAYNNNNRTG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 823
SaqAI TTAA 2 cut(s) 351, 468
SatI GCNGC 7 cut(s) 36, 70, 108, 139, 246, 475, 679
Sau3AI GATC 2 cut(s) 290, 641
Sau96I GGNCC 2 cut(s) 262, 708
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 3 cut(s) 425, 443, 772
SetI ASST 9 cut(s) 33, 219, 485, 510, 549, 693, 720, 849, 869
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 1 cut(s) 708
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 5 cut(s) 525, 630, 755, 841, 876
TaaI ACNGT 2 cut(s) 100, 368
TaiI ACGT 6 cut(s) 33, 219, 485, 510, 549, 849
TaqI TCGA 2 cut(s) 24, 419
TasI AATT 5 cut(s) 525, 630, 755, 841, 876
TatI WGTACW 1 cut(s) 620
TauI GCSGC 6 cut(s) 38, 110, 141, 248, 477, 681
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 351, 468
Tru9I TTAA 2 cut(s) 351, 468
TscAI CASTG 1 cut(s) 453
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 3 cut(s) 748, 785, 828
TspGWI ACGGA 6 cut(s) 79, 138, 509, 548, 665, 700
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 708
XapI RAATTY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.