RchiOBHm_Chr6g0301481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017253
Physical Location & Seq
Forward (+)
61854823 .. 61855962
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27077

Sequence Viewer

Length: 840 bp
ATGGATTCACAGAGACTCGTCTTCGACAGTGTCAAGGCCGAGAAAGCCAATGCCATGAGACATTACCGGTGGCGCCAGAACCTCCGGTGGTTGTGGAAGGCGTGTCTGCTATTCGCGCCGCTCTCTTACGCGCTCTGCCGCGACGCGCCCCGCCAACTCCTTATCGCCGTTTTCAACAGCAACCTCTGCGTTTTTTTGCTTCTTAATGCCTTGGTTGTCGTCACGTGTGTTTTGTCCGGCGAAAACGTCGCCGGCAGCGACAAGTCCGGAGGAGTTACGGAGAACGATATTTACGGCGAGTACGTTGCCAACGTGGAGTCTACTCGCCGGAGTGACCCTGTCGCCGGATTCAAGGGGTCTGAGTTGGTCAATCCCGAGGCGGAGGAGGGTTTAGCGAAGGAGAAAGAAATTGTATGTTTCGTTTCTCGCCGGAGTATGGTCGCCGGATATGAGTCTCCGGCGGAAACTGAGACGGCTATTTTGCCGGAGGAAGTTTCAAACTTCCAAGGAATCGAATCCTATGAGAATGTGAATGTGGAATCTCTACTGCCGGTTTGTGAAGACAAAGCGGTTACTGAATGTAAAATTGTGGTCTCTCCAGTTTCTGCAGTTACCACGAGTACTAGTGGTAGTGGTTGTGGTGAGGAAAGCGAAAAGGTGAAGGGTTACCGGAGGACACAGTCGGAGAGTTTCGAGAAGAAGAGGAAGGAGCCTAAGAGGGGTTTGCAGCGATCGAAAACAAAGATGGAGGACTTGTCGGCTGAGGAGTTCCGACACCAGATCGAGCTTTTCATTACTGCTAATAAGTACATGATTCAGATGCTTGAGGAAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.25

Weight (kDa)

5.32

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 320
AccII CGCG 4 cut(s) 116, 131, 141, 146
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 6 cut(s) 119, 139, 151, 380, 461, 569
AcvI CACGTG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 3 cut(s) 302, 622, 809
AfiI CCNNNNNNNGG 3 cut(s) 344, 436, 719
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 175, 352, 498
AhlI ACTAGT 1 cut(s) 623
AluBI AGCT 1 cut(s) 787
AluI AGCT 1 cut(s) 787
Alw26I GTCTC 5 cut(s) 7, 52, 459, 464, 598
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 255, 727
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
AsiGI ACCGGT 1 cut(s) 66
AspLEI GCGC 4 cut(s) 75, 118, 133, 148
AsuHPI GGTGA 2 cut(s) 653, 670
AvaI CYCGRG 1 cut(s) 374
BanI GGYRCC 1 cut(s) 72
BauI CACGAG 1 cut(s) 616
BbrPI CACGTG 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 13, 567
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 267, 739
BccI CCATC 1 cut(s) 739
BceAI ACGGC 3 cut(s) 152, 310, 489
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 5 cut(s) 7, 52, 459, 464, 598
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 4 cut(s) 119, 139, 256, 728
BlsI GCNGC 4 cut(s) 120, 140, 257, 729
BmcAI AGTACT 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 74, 711
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 2 cut(s) 13, 567
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 210, 375, 505
BsaWI WCCGGW 4 cut(s) 66, 84, 266, 669
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 436, 719
Bse118I RCCGGY 3 cut(s) 66, 251, 550
Bse1I ACTGG 1 cut(s) 599
BseAI TCCGGA 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 210, 375, 505
BseLI CCNNNNNNNGG 3 cut(s) 344, 436, 719
BseMII CTCAG 3 cut(s) 351, 459, 753
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 3 cut(s) 285, 398, 779
BseXI GCAGC 2 cut(s) 267, 739
Bsh1236I CGCG 4 cut(s) 116, 131, 141, 146
Bsh1285I CGRYCG 1 cut(s) 734
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 734
BsiHKCI CYCGRG 1 cut(s) 374
BslI CCNNNNNNNGG 3 cut(s) 344, 436, 719
BsmAI GTCTC 5 cut(s) 7, 52, 459, 464, 598
BsmBI CGTCTC 1 cut(s) 464
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 374
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 731, 780
BspACI CCGC 6 cut(s) 119, 139, 151, 380, 461, 569
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 352, 460, 754
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 4 cut(s) 116, 131, 141, 146
BspLI GGNNCC 2 cut(s) 74, 711
BspMAI CTGCAG 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 3 cut(s) 66, 251, 550
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 3 cut(s) 66, 251, 550
BssECI CCNNGG 3 cut(s) 210, 375, 505
BssMI GATC 2 cut(s) 731, 780
BssNI GRCGYC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 616
BssT1I CCWWGG 2 cut(s) 210, 505
Bst2BI CACGAG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 29, 681
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 360, 468, 714, 762
BstEII GGTNACC 1 cut(s) 665
BstFNI CGCG 4 cut(s) 116, 131, 141, 146
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 4 cut(s) 75, 118, 133, 148
BstKTI GATC 2 cut(s) 734, 783
BstMAI GTCTC 5 cut(s) 7, 52, 459, 464, 598
BstMBI GATC 2 cut(s) 731, 780
BstMCI CGRYCG 1 cut(s) 734
BstMWI GCNNNNNNNGC 3 cut(s) 44, 115, 186
BstPI GGTNACC 1 cut(s) 665
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 4 cut(s) 116, 131, 141, 146
BstV1I GCAGC 2 cut(s) 267, 739
BstV2I GAAGAC 2 cut(s) 13, 567
BsuRI GGCC 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 4 cut(s) 75, 118, 133, 148
Cfr10I RCCGGY 3 cut(s) 66, 251, 550
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 301, 621, 808
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 2 cut(s) 55, 811
CviJI RGCY 6 cut(s) 38, 47, 476, 712, 761, 787
CviKI_1 RGCY 6 cut(s) 38, 47, 476, 712, 761, 787
CviQI GTAC 3 cut(s) 301, 621, 808
DdeI CTNAG 4 cut(s) 360, 468, 714, 762
DinI GGCGCC 1 cut(s) 74
DpnI GATC 2 cut(s) 733, 782
DpnII GATC 2 cut(s) 731, 780
Eam1104I CTCTTC 1 cut(s) 695
EarI CTCTTC 1 cut(s) 695
EciI GGCGGA 2 cut(s) 395, 476
Eco130I CCWWGG 2 cut(s) 210, 505
Eco31I GGTCTC 1 cut(s) 598
Eco72I CACGTG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 665
EcoO65I GGTNACC 1 cut(s) 665
EcoT14I CCWWGG 2 cut(s) 210, 505
EgeI GGCGCC 1 cut(s) 74
EheI GGCGCC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 210, 505
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 2 cut(s) 58, 814
FaiI YATR 6 cut(s) 56, 415, 437, 450, 522, 812
FatI CATG 2 cut(s) 54, 810
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 119, 139, 256, 728
Fsp4HI GCNGC 4 cut(s) 119, 139, 256, 728
FspBI CTAG 1 cut(s) 624
GlaI GCGC 4 cut(s) 74, 117, 132, 147
GluI GCNGC 4 cut(s) 119, 139, 256, 728
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 152
HhaI GCGC 4 cut(s) 75, 118, 133, 148
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 58, 814
Hin6I GCGC 4 cut(s) 73, 116, 131, 146
HinP1I GCGC 4 cut(s) 73, 116, 131, 146
HinfI GANTC 9 cut(s) 5, 15, 317, 348, 452, 510, 515, 539, 814
HphI GGTGA 2 cut(s) 653, 670
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 4 cut(s) 361, 685, 773, 819
Hpy188III TCNNGA 3 cut(s) 267, 374, 694
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 2 cut(s) 146, 251
HpyAV CCTTC 4 cut(s) 91, 391, 655, 700
HpyCH4III ACNGT 2 cut(s) 29, 681
HpyCH4IV ACGT 4 cut(s) 224, 246, 303, 312
HpyCH4V TGCA 2 cut(s) 608, 727
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 115, 186
HpyF3I CTNAG 4 cut(s) 360, 468, 714, 762
HpySE526I ACGT 4 cut(s) 224, 246, 303, 312
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 58, 814
HspAI GCGC 4 cut(s) 73, 116, 131, 146
KasI GGCGCC 1 cut(s) 72
Kpn2I TCCGGA 1 cut(s) 266
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 731, 780
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 2 cut(s) 267, 739
LweI GCATC 1 cut(s) 810
MaeI CTAG 1 cut(s) 624
MaeII ACGT 4 cut(s) 224, 246, 303, 312
MaeIII GTNAC 6 cut(s) 220, 274, 332, 571, 610, 665
MalI GATC 2 cut(s) 733, 782
MbiI CCGCTC 1 cut(s) 121
MboI GATC 2 cut(s) 731, 780
MboII GAAGA 4 cut(s) 13, 572, 709, 712
MluCI AATT 2 cut(s) 408, 585
Mly113I GGCGCC 1 cut(s) 73
MlyI GAGTC 3 cut(s) 9, 326, 461
MmeI TCCRAC 2 cut(s) 663, 796
MroI TCCGGA 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 204
MvnI CGCG 4 cut(s) 116, 131, 141, 146
MwoI GCNNNNNNNGC 3 cut(s) 44, 115, 186
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 1 cut(s) 73
NdeII GATC 2 cut(s) 731, 780
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 58, 814
NlaIV GGNNCC 2 cut(s) 74, 711
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 220, 332
PcsI WCGNNNNNNNCGW 3 cut(s) 255, 300, 309
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 6 cut(s) 5, 348, 510, 515, 539, 814
PflFI GACNNNGTC 3 cut(s) 29, 338, 679
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 4 cut(s) 120, 140, 257, 729
Ple19I CGATCG 1 cut(s) 734
PleI GAGTC 3 cut(s) 9, 325, 460
PluTI GGCGCC 1 cut(s) 76
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
PpsI GAGTC 3 cut(s) 9, 325, 460
Ppu21I YACGTR 1 cut(s) 225
PspCI CACGTG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 665
PspN4I GGNNCC 2 cut(s) 74, 711
PsrI GAACNNNNNNTAC 2 cut(s) 275, 307
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 605
PsyI GACNNNGTC 3 cut(s) 29, 338, 679
PvuI CGATCG 1 cut(s) 734
RsaI GTAC 3 cut(s) 302, 622, 809
RsaNI GTAC 3 cut(s) 301, 621, 808
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 119, 139, 256, 728
Sau3AI GATC 2 cut(s) 731, 780
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 3 cut(s) 9, 326, 461
SetI ASST 8 cut(s) 84, 186, 227, 249, 306, 315, 660, 789
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 1 cut(s) 606
SfoI GGCGCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 2 cut(s) 408, 585
SsiI CCGC 6 cut(s) 119, 139, 151, 380, 461, 569
SspDI GGCGCC 1 cut(s) 72
SspMI CTAG 1 cut(s) 624
StyI CCWWGG 2 cut(s) 210, 505
TaaI ACNGT 2 cut(s) 29, 681
TaiI ACGT 4 cut(s) 227, 249, 306, 315
TaqI TCGA 5 cut(s) 24, 513, 693, 734, 783
TasI AATT 2 cut(s) 408, 585
TatI WGTACW 2 cut(s) 620, 807
TauI GCSGC 2 cut(s) 121, 141
TfiI GAWTC 6 cut(s) 5, 348, 510, 515, 539, 814
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 220, 332
TseI GCWGC 2 cut(s) 255, 727
Tsp45I GTSAC 2 cut(s) 220, 332
TspDTI ATGAA 1 cut(s) 781
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 34
Tth111I GACNNNGTC 3 cut(s) 29, 338, 679
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 1 cut(s) 624
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.