Rh6AG419100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017253
Physical Location & Seq
Forward (+)
61253306 .. 61254820
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG419100.1

Sequence Viewer

Length: 810 bp
ATGGATTCACAGAGACTAGTCTTCGACAGTGTCAAGGCCGAGAAAGCCAATGCCATGAGACATTACCGGTGGCGCCAGAACCTCCGGTGGTTGTGGAAGGCGTGTCTGCTAGTCGCGCCGCTCTCTTACGCGCTCTGCCGCGACGCGCCCCGCCAACTCCTTATCGCCGTTTTCAACAGCAACCTCTGCGTTTTTTTGCTTCTTAATGCCTTGGTTGTCGTCACGTGTGTTTTGTCCGGCGAAAACGTCGCCGGCAGCGACAAGTCCGGAGGAGTTACGGAGAACGACATTTACGGCGAGTACGTTGCCAACGTGGAGTCTACTCGCCGGAGTGACCCTGTCGCCGGATTCAAGGGGTCTGAGTTGGTCAATCCCGAGGCGGAGGAGGGTTTAGCGAAGGAGAAAGAAATTGGATGTTTCGTTTCTCGCCGGAGTATGGTCGCCGGATATGAGTCTCCGGCGGAGACTGAGACGGCTATTTTGCCGGAGGAAGATTCAAACTTCCAAGGAATCGAATCCTATGAGAATGTGAATGTGGAATCTCTACTGCCGGTTTGTGAAGACAAAGCGGTTACTGAATGTAAAATTGTGGTCTCTCCAGTTTCTGCAGTTACCACGAGTACTAGTGGTTGTGGTGAGGAAAGCGAAAAGGTGAAGGGTTACCGGAGGACACAATCGGAGAGTTTCGAGAAGAAGAGGAAGGAGCCTAAGAGGGGTTTGCAGCGATCGAAAACAAAGATGGACGACTTGTCGGATGAGGAGTTCCGACACCAGATCGAGCTTTTCATTACTGCTAATAAAAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.95

Weight (kDa)

5.29

Isoelectric Point (pI)

69.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 320
AccII CGCG 4 cut(s) 116, 131, 141, 146
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 6 cut(s) 119, 139, 151, 380, 461, 569
AcvI CACGTG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 2 cut(s) 302, 622
AfiI CCNNNNNNNGG 3 cut(s) 344, 436, 713
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 175, 352, 498
AhdI GACNNNNNGTC 1 cut(s) 748
AhlI ACTAGT 2 cut(s) 16, 623
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 1 cut(s) 781
AluI AGCT 1 cut(s) 781
Alw26I GTCTC 6 cut(s) 7, 52, 458, 459, 464, 598
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 255, 721
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
AsiGI ACCGGT 1 cut(s) 66
AspLEI GCGC 4 cut(s) 75, 118, 133, 148
AsuHPI GGTGA 2 cut(s) 647, 664
AvaI CYCGRG 1 cut(s) 374
BanI GGYRCC 1 cut(s) 72
BauI CACGAG 1 cut(s) 616
BbrPI CACGTG 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 13, 567
BbvI GCAGC 2 cut(s) 267, 733
BccI CCATC 1 cut(s) 733
BceAI ACGGC 3 cut(s) 152, 310, 489
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 6 cut(s) 7, 52, 458, 459, 464, 598
BcuI ACTAGT 2 cut(s) 16, 623
BfaI CTAG 3 cut(s) 17, 110, 624
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 4 cut(s) 119, 139, 256, 722
BlsI GCNGC 4 cut(s) 120, 140, 257, 723
BmcAI AGTACT 1 cut(s) 622
BmeRI GACNNNNNGTC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 74, 705
BpiI GAAGAC 2 cut(s) 13, 567
BpmI CTGGAG 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 210, 375, 505
BsaWI WCCGGW 4 cut(s) 66, 84, 266, 663
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 436, 713
Bse118I RCCGGY 3 cut(s) 66, 251, 550
Bse1I ACTGG 1 cut(s) 599
BseAI TCCGGA 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 210, 375, 505
BseGI GGATG 2 cut(s) 419, 760
BseLI CCNNNNNNNGG 3 cut(s) 344, 436, 713
BseMII CTCAG 2 cut(s) 351, 459
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 3 cut(s) 285, 398, 773
BseXI GCAGC 2 cut(s) 267, 733
Bsh1236I CGCG 4 cut(s) 116, 131, 141, 146
Bsh1285I CGRYCG 1 cut(s) 728
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 374
BslI CCNNNNNNNGG 3 cut(s) 344, 436, 713
BsmAI GTCTC 6 cut(s) 7, 52, 458, 459, 464, 598
BsmBI CGTCTC 1 cut(s) 464
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 374
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 725, 774
BspACI CCGC 6 cut(s) 119, 139, 151, 380, 461, 569
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 352, 460
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 4 cut(s) 116, 131, 141, 146
BspHI TCATGA 1 cut(s) 806
BspLI GGNNCC 2 cut(s) 74, 705
BspMAI CTGCAG 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 3 cut(s) 66, 251, 550
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 3 cut(s) 66, 251, 550
BssECI CCNNGG 3 cut(s) 210, 375, 505
BssMI GATC 2 cut(s) 725, 774
BssNI GRCGYC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 616
BssT1I CCWWGG 2 cut(s) 210, 505
Bst2BI CACGAG 1 cut(s) 616
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 689
BstACI GRCGYC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 360, 468, 708
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 2 cut(s) 419, 760
BstFNI CGCG 4 cut(s) 116, 131, 141, 146
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 4 cut(s) 75, 118, 133, 148
BstKTI GATC 2 cut(s) 728, 777
BstMAI GTCTC 6 cut(s) 7, 52, 458, 459, 464, 598
BstMBI GATC 2 cut(s) 725, 774
BstMCI CGRYCG 1 cut(s) 728
BstMWI GCNNNNNNNGC 3 cut(s) 44, 115, 186
BstPI GGTNACC 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 4 cut(s) 116, 131, 141, 146
BstV1I GCAGC 2 cut(s) 267, 733
BstV2I GAAGAC 2 cut(s) 13, 567
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 419, 760
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 806
CfoI GCGC 4 cut(s) 75, 118, 133, 148
Cfr10I RCCGGY 3 cut(s) 66, 251, 550
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 301, 621
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 2 cut(s) 55, 807
CviJI RGCY 5 cut(s) 38, 47, 476, 706, 781
CviKI_1 RGCY 5 cut(s) 38, 47, 476, 706, 781
CviQI GTAC 2 cut(s) 301, 621
DdeI CTNAG 3 cut(s) 360, 468, 708
DinI GGCGCC 1 cut(s) 74
DpnI GATC 2 cut(s) 727, 776
DpnII GATC 2 cut(s) 725, 774
DriI GACNNNNNGTC 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 689
Eam1105I GACNNNNNGTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 689
EciI GGCGGA 2 cut(s) 395, 476
Eco130I CCWWGG 2 cut(s) 210, 505
Eco31I GGTCTC 1 cut(s) 598
Eco72I CACGTG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 659
EcoT14I CCWWGG 2 cut(s) 210, 505
EgeI GGCGCC 1 cut(s) 74
EheI GGCGCC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 210, 505
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 2 cut(s) 58, 810
FaiI YATR 5 cut(s) 56, 437, 450, 522, 808
FatI CATG 2 cut(s) 54, 806
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 119, 139, 256, 722
FokI GGATG 2 cut(s) 426, 767
Fsp4HI GCNGC 4 cut(s) 119, 139, 256, 722
FspBI CTAG 3 cut(s) 17, 110, 624
GlaI GCGC 4 cut(s) 74, 117, 132, 147
GluI GCNGC 4 cut(s) 119, 139, 256, 722
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 152
HhaI GCGC 4 cut(s) 75, 118, 133, 148
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 58, 810
Hin6I GCGC 4 cut(s) 73, 116, 131, 146
HinP1I GCGC 4 cut(s) 73, 116, 131, 146
HinfI GANTC 8 cut(s) 5, 317, 348, 452, 494, 510, 515, 539
HphI GGTGA 2 cut(s) 647, 664
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 4 cut(s) 361, 679, 754, 767
Hpy188III TCNNGA 4 cut(s) 267, 374, 688, 807
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 2 cut(s) 146, 251
HpyAV CCTTC 4 cut(s) 91, 391, 649, 694
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 4 cut(s) 224, 246, 303, 312
HpyCH4V TGCA 2 cut(s) 608, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 115, 186
HpyF3I CTNAG 3 cut(s) 360, 468, 708
HpySE526I ACGT 4 cut(s) 224, 246, 303, 312
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 58, 810
HspAI GCGC 4 cut(s) 73, 116, 131, 146
KasI GGCGCC 1 cut(s) 72
Kpn2I TCCGGA 1 cut(s) 266
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 725, 774
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 2 cut(s) 267, 733
MaeI CTAG 3 cut(s) 17, 110, 624
MaeII ACGT 4 cut(s) 224, 246, 303, 312
MaeIII GTNAC 6 cut(s) 220, 274, 332, 571, 610, 659
MalI GATC 2 cut(s) 727, 776
MbiI CCGCTC 1 cut(s) 121
MboI GATC 2 cut(s) 725, 774
MboII GAAGA 5 cut(s) 13, 503, 572, 703, 706
MluCI AATT 2 cut(s) 408, 585
Mly113I GGCGCC 1 cut(s) 73
MlyI GAGTC 2 cut(s) 326, 461
MmeI TCCRAC 2 cut(s) 732, 790
MroI TCCGGA 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 204
MvnI CGCG 4 cut(s) 116, 131, 141, 146
MwoI GCNNNNNNNGC 3 cut(s) 44, 115, 186
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 1 cut(s) 73
NdeII GATC 2 cut(s) 725, 774
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 58, 810
NlaIV GGNNCC 2 cut(s) 74, 705
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 220, 332
PagI TCATGA 1 cut(s) 806
PcsI WCGNNNNNNNCGW 3 cut(s) 255, 300, 309
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 6 cut(s) 5, 348, 494, 510, 515, 539
PflFI GACNNNGTC 2 cut(s) 29, 338
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 4 cut(s) 120, 140, 257, 723
Ple19I CGATCG 1 cut(s) 728
PleI GAGTC 2 cut(s) 325, 460
PluTI GGCGCC 1 cut(s) 76
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
PpsI GAGTC 2 cut(s) 325, 460
Ppu21I YACGTR 1 cut(s) 225
PspCI CACGTG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 74, 705
PsrI GAACNNNNNNTAC 2 cut(s) 275, 307
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 605
PsyI GACNNNGTC 2 cut(s) 29, 338
PvuI CGATCG 1 cut(s) 728
RsaI GTAC 2 cut(s) 302, 622
RsaNI GTAC 2 cut(s) 301, 621
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 119, 139, 256, 722
Sau3AI GATC 2 cut(s) 725, 774
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 2 cut(s) 326, 461
SetI ASST 8 cut(s) 84, 186, 227, 249, 306, 315, 654, 783
SfcI CTRYAG 1 cut(s) 606
SfoI GGCGCC 1 cut(s) 74
SpeI ACTAGT 2 cut(s) 16, 623
Sse9I AATT 2 cut(s) 408, 585
SsiI CCGC 6 cut(s) 119, 139, 151, 380, 461, 569
SspDI GGCGCC 1 cut(s) 72
SspMI CTAG 3 cut(s) 17, 110, 624
StyI CCWWGG 2 cut(s) 210, 505
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 4 cut(s) 227, 249, 306, 315
TaqI TCGA 5 cut(s) 24, 513, 687, 728, 777
TasI AATT 2 cut(s) 408, 585
TatI WGTACW 1 cut(s) 620
TauI GCSGC 2 cut(s) 121, 141
TfiI GAWTC 6 cut(s) 5, 348, 494, 510, 515, 539
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 220, 332
TseI GCWGC 2 cut(s) 255, 721
Tsp45I GTSAC 2 cut(s) 220, 332
TspDTI ATGAA 2 cut(s) 775, 795
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 34
Tth111I GACNNNGTC 2 cut(s) 29, 338
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 3 cut(s) 17, 110, 624
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.