RLG00000011250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017253
Physical Location & Seq
Reverse (-)
7984802 .. 7985632
831 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011250

Sequence Viewer

Length: 831 bp
ATGGATTCACAGAGAGTAGTCTTCGACAGTGTCAAGGCCGAGAAAGCCAATGCCATGAGACGTTACCGGTGGCGCCAGAACCTCCGGTGGTTGTGGAAGGCGTGTCTGCTACTCGCGCCTCTCTCTTACACGCTCTGCCGCGACGCGCCCCGCCAACTCCTTTTCGCCATTTTCAACAGCAACCTCTGCGTTTTTTTGATTCTTAATGCCTTGGTTGTCGTCACATGTGTTTTGTCCGGCGAAAACGTCGCCCGCAGAGACAAGTCCGGAGGAGTTACGGAGAATGATATTTACGGCGAGTACGTTGCCAACGTGGAGTCTACTCGCCGGAGTGACCCTGTCGCCGGATTCGACGGGTCTGAGTTGGTCAATCCCGAGGCGGAGGAGGGTTTAGCGAAGGAGAAAGAAATTGGATGTTTCGTTTCTTGCCGGAGTATGGTCGCTGGATATGAGTCTCCGGAAGAAACTGAGACGGCTATTTTGCCGGAGGAAGTTTCAAACTTCCAAGGAACCGAATCCTATGAGAATGTGAATGCGGAATCTCTCCTGCCGGTTTGTGAGGACAAAGCGGTTACTGAATGTAAAATTGTGGTCTCTCCAGTTTCTGCTGTTACTACAAGTACTAGTGGTTGTGGTGAGGAAAGCGAAAAGGTGAAGAGTTACCGGAGGACACAATCGGAGAGTTTCGAGAAGAAGAGGAAGGAGCCTAAGAGGGGTTTGCAGAGATCGAAAACAAAGATGGAGGACTTGTCGGCTGAGGAGTTCCAACGCCAGATTGAGCTTTTCATTACTGCTAATAAGTTGATTCAGATGCTTGAGGAAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.07

Weight (kDa)

5.1

Isoelectric Point (pI)

69.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 320
AccII CGCG 3 cut(s) 116, 141, 146
AccIII TCCGGA 2 cut(s) 266, 457
AciI CCGC 6 cut(s) 139, 151, 253, 380, 536, 569
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 2 cut(s) 302, 622
AfiI CCNNNNNNNGG 3 cut(s) 344, 436, 713
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 175, 498
AhlI ACTAGT 1 cut(s) 623
AluBI AGCT 1 cut(s) 781
AluI AGCT 1 cut(s) 781
Alw26I GTCTC 5 cut(s) 52, 252, 459, 464, 598
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 2 cut(s) 266, 457
AoxI GGCC 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
AsiGI ACCGGT 1 cut(s) 66
AspLEI GCGC 3 cut(s) 75, 118, 148
AsuHPI GGTGA 2 cut(s) 647, 664
AvaI CYCGRG 1 cut(s) 374
BanI GGYRCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 756
BccI CCATC 1 cut(s) 733
BceAI ACGGC 2 cut(s) 310, 489
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 5 cut(s) 52, 252, 459, 464, 598
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmcAI AGTACT 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 3 cut(s) 74, 511, 705
BmsI GCATC 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 210, 375, 505
BsaWI WCCGGW 5 cut(s) 66, 84, 266, 457, 663
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 436, 713
Bse118I RCCGGY 2 cut(s) 66, 550
Bse1I ACTGG 1 cut(s) 599
BseAI TCCGGA 2 cut(s) 266, 457
BseDI CCNNGG 3 cut(s) 210, 375, 505
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 344, 436, 713
BseMII CTCAG 3 cut(s) 351, 459, 747
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 3 cut(s) 285, 398, 773
Bsh1236I CGCG 3 cut(s) 116, 141, 146
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 374
BslI CCNNNNNNNGG 3 cut(s) 344, 436, 713
BsmAI GTCTC 5 cut(s) 52, 252, 459, 464, 598
BsmBI CGTCTC 2 cut(s) 52, 464
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 374
Bsp13I TCCGGA 2 cut(s) 266, 457
Bsp143I GATC 1 cut(s) 725
BspACI CCGC 6 cut(s) 139, 151, 253, 380, 536, 569
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 352, 460, 748
BspEI TCCGGA 2 cut(s) 266, 457
BspFNI CGCG 3 cut(s) 116, 141, 146
BspLI GGNNCC 3 cut(s) 74, 511, 705
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 598
BsrFI RCCGGY 2 cut(s) 66, 550
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 2 cut(s) 66, 550
BssECI CCNNGG 3 cut(s) 210, 375, 505
BssMI GATC 1 cut(s) 725
BssNI GRCGYC 1 cut(s) 73
BssT1I CCWWGG 2 cut(s) 210, 505
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 650, 689
BstACI GRCGYC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 360, 468, 708, 756
BstF5I GGATG 1 cut(s) 419
BstFNI CGCG 3 cut(s) 116, 141, 146
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 3 cut(s) 75, 118, 148
BstKTI GATC 1 cut(s) 728
BstMAI GTCTC 5 cut(s) 52, 252, 459, 464, 598
BstMBI GATC 1 cut(s) 725
BstMWI GCNNNNNNNGC 3 cut(s) 44, 115, 186
BstNSI RCATGY 1 cut(s) 228
BstUI CGCG 3 cut(s) 116, 141, 146
BstV2I GAAGAC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 3 cut(s) 75, 118, 148
Cfr10I RCCGGY 2 cut(s) 66, 550
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 301, 621
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 2 cut(s) 55, 225
CviJI RGCY 6 cut(s) 38, 47, 476, 706, 755, 781
CviKI_1 RGCY 6 cut(s) 38, 47, 476, 706, 755, 781
CviQI GTAC 2 cut(s) 301, 621
DdeI CTNAG 4 cut(s) 360, 468, 708, 756
DinI GGCGCC 1 cut(s) 74
DpnI GATC 1 cut(s) 727
DpnII GATC 1 cut(s) 725
Eam1104I CTCTTC 2 cut(s) 650, 689
EarI CTCTTC 2 cut(s) 650, 689
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 210, 505
Eco31I GGTCTC 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 210, 505
EgeI GGCGCC 1 cut(s) 74
EheI GGCGCC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 210, 505
Esp3I CGTCTC 2 cut(s) 52, 464
FaeI CATG 2 cut(s) 58, 228
FaiI YATR 5 cut(s) 56, 226, 437, 450, 522
FatI CATG 2 cut(s) 54, 224
FauI CCCGC 2 cut(s) 158, 260
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 624
GlaI GCGC 3 cut(s) 74, 117, 147
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 152
HhaI GCGC 3 cut(s) 75, 118, 148
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 58, 228
Hin6I GCGC 3 cut(s) 73, 116, 146
HinP1I GCGC 3 cut(s) 73, 116, 146
HinfI GANTC 8 cut(s) 5, 199, 317, 348, 452, 515, 539, 805
HphI GGTGA 2 cut(s) 647, 664
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 361, 679, 810
Hpy188III TCNNGA 4 cut(s) 267, 374, 458, 688
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 3 cut(s) 146, 251, 356
HpyAV CCTTC 3 cut(s) 91, 391, 694
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 4 cut(s) 61, 246, 303, 312
HpyCH4V TGCA 1 cut(s) 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 115, 186
HpyF3I CTNAG 4 cut(s) 360, 468, 708, 756
HpySE526I ACGT 4 cut(s) 61, 246, 303, 312
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 58, 228
HspAI GCGC 3 cut(s) 73, 116, 146
KasI GGCGCC 1 cut(s) 72
Kpn2I TCCGGA 2 cut(s) 266, 457
Kzo9I GATC 1 cut(s) 725
LmnI GCTCC 1 cut(s) 703
LweI GCATC 1 cut(s) 801
MaeI CTAG 1 cut(s) 624
MaeII ACGT 4 cut(s) 61, 246, 303, 312
MaeIII GTNAC 7 cut(s) 62, 220, 274, 332, 571, 610, 659
MalI GATC 1 cut(s) 727
MboI GATC 1 cut(s) 725
MboII GAAGA 5 cut(s) 13, 473, 667, 703, 706
MluCI AATT 2 cut(s) 408, 585
Mly113I GGCGCC 1 cut(s) 73
MlyI GAGTC 2 cut(s) 326, 461
MmeI TCCRAC 1 cut(s) 790
MroI TCCGGA 2 cut(s) 266, 457
MseI TTAA 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 538
MvnI CGCG 3 cut(s) 116, 141, 146
MwoI GCNNNNNNNGC 3 cut(s) 44, 115, 186
NarI GGCGCC 1 cut(s) 73
NdeII GATC 1 cut(s) 725
NlaIII CATG 2 cut(s) 58, 228
NlaIV GGNNCC 3 cut(s) 74, 511, 705
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 220, 332
NspI RCATGY 1 cut(s) 228
PciI ACATGT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 3 cut(s) 300, 309, 348
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 6 cut(s) 5, 199, 348, 515, 539, 805
PflFI GACNNNGTC 2 cut(s) 29, 338
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 2 cut(s) 325, 460
PluTI GGCGCC 1 cut(s) 76
PpsI GAGTC 2 cut(s) 325, 460
PscI ACATGT 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 74, 511, 705
PstNI CAGNNNCTG 1 cut(s) 605
PsyI GACNNNGTC 2 cut(s) 29, 338
RsaI GTAC 2 cut(s) 302, 622
RsaNI GTAC 2 cut(s) 301, 621
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 2 cut(s) 326, 461
SetI ASST 8 cut(s) 64, 84, 186, 249, 306, 315, 654, 783
SfaNI GCATC 1 cut(s) 801
SfoI GGCGCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 2 cut(s) 408, 585
SsiI CCGC 6 cut(s) 139, 151, 253, 380, 536, 569
SspDI GGCGCC 1 cut(s) 72
SspMI CTAG 1 cut(s) 624
StyI CCWWGG 2 cut(s) 210, 505
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 4 cut(s) 64, 249, 306, 315
TaqI TCGA 4 cut(s) 24, 351, 687, 728
TasI AATT 2 cut(s) 408, 585
TatI WGTACW 1 cut(s) 620
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 6 cut(s) 5, 199, 348, 515, 539, 805
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 220, 332
Tsp45I GTSAC 2 cut(s) 220, 332
TspDTI ATGAA 1 cut(s) 775
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 34
Tth111I GACNNNGTC 2 cut(s) 29, 338
XceI RCATGY 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 1 cut(s) 624
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.