Prupe.6G135400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017253
Physical Location & Seq
Forward (+)
10772911 .. 10773902
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G135400.1

Sequence Viewer

Length: 681 bp
ATGCATTCACACCAACCCTTTGATAACGTGATGGCAGCTGAGAAAGCCATTGTCATGAGAAGCTACCAAAACTTCAACAAGGAGATTCTGATCACACTGTGCTTCGCATTCCCGCCTCTCTTCTTAGCCCTCTGGTGCTCCTCCGCGTGGTATCCGGCCGCCGCCAATCTCTCCCACCAGTTTTACGGGGCACTCATTGCACTCTTCGGCAGTCATCATTTGTACGCTTTCTTGCTCTGCAACGTCCTTATTGTTGCCATCTACTCTATGTCCCCCATTGGGCGATCACCCGATGTCTACGAAGAGTCCGCCATCAACAGTGAGTATTGGTGGAATATATATCTGGAACCAGAGACAACGCCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATCAGAACAAACAAATCGCATGGTCTGAGGATATTAGTGCCGTAGTGCCTCTTGTTGATGACAACACAAAGATGAGTTGCAGCGAAGAGCCGACAGGGAGGCATCCAAGTGCTATGGAGGAACTGAACGATAAGGAATTCCAGCAGATAATAGATGATTCCATTTTTAGATCGAAGAAGGATATTCTGGGGGAAGATATTCAAAGTGAAAAATGTATGAAAGAAAAAGGAGAAGAAGAAGATAATAGGGCAACCACATCAGCATATATGTCTCTTTCAATATCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.88

Weight (kDa)

4.42

Isoelectric Point (pI)

82.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39470
prunus_persica Prupe.6G135400_v2.0.a1
pyrus_communis pycom15g02020
rosa_chinensis RchiOBHm_Chr6g0301481
rosa_laevigata RLG00000011250
rosa_multiflora Rmu_sc0014417.1_g000018
rosa_roxburghii Rroxscaffold_7G00166760
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG419100 Rh6BG425000 Rh6CG432300 Rh6DG418200
rosa_wichuraiana Rw6G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 146
AciI CCGC 5 cut(s) 113, 144, 159, 162, 309
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 527
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 147, 279
AgsI TTSAA 3 cut(s) 76, 593, 669
AluBI AGCT 2 cut(s) 38, 63
AluI AGCT 2 cut(s) 38, 63
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 347, 666
AlwI GGATC 1 cut(s) 399
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 35, 471
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 588
AsuHPI GGTGA 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 47, 483
BccI CCATC 3 cut(s) 25, 266, 320
BceAI ACGGC 1 cut(s) 416
BciVI GTATCC 1 cut(s) 162
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 347, 666
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 4 cut(s) 36, 159, 162, 472
BlsI GCNGC 4 cut(s) 37, 160, 163, 473
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 279
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 89
BseGI GGATG 1 cut(s) 493
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 147, 279
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 30, 408
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 9 cut(s) 130, 380, 383, 386, 389, 392, 395, 398, 401
BseSI GKGCMC 1 cut(s) 193
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 47, 483
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 147, 279
BsmAI GTCTC 2 cut(s) 347, 666
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 4, 107
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 140, 193
Bsp143I GATC 4 cut(s) 90, 284, 391, 560
BspACI CCGC 5 cut(s) 113, 144, 159, 162, 309
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 2 cut(s) 31, 409
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 399
BspQI GCTCTTC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 178
BssMI GATC 4 cut(s) 90, 284, 391, 560
Bst4CI ACNGT 2 cut(s) 99, 320
Bst6I CTCTTC 4 cut(s) 125, 209, 297, 471
BstAPI GCANNNNNTGC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 39, 124, 417
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 4 cut(s) 93, 287, 394, 563
BstMAI GTCTC 2 cut(s) 347, 666
BstMBI GATC 4 cut(s) 90, 284, 391, 560
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 44, 197
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 47, 483
BstZI CGGCCG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 95, 325
CciI TCATGA 1 cut(s) 54
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 55, 411
CviJI RGCY 6 cut(s) 38, 47, 63, 128, 158, 481
CviKI_1 RGCY 6 cut(s) 38, 47, 63, 128, 158, 481
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 3 cut(s) 39, 124, 417
DpnI GATC 4 cut(s) 92, 286, 393, 562
DpnII GATC 4 cut(s) 90, 284, 391, 560
DraIII CACNNNGTG 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 156
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 4 cut(s) 125, 209, 297, 471
EarI CTCTTC 4 cut(s) 125, 209, 297, 471
EciI GGCGGA 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 527
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 58, 414
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 54, 410
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 36, 159, 162, 472
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 4 cut(s) 36, 159, 162, 472
GluI GCNGC 4 cut(s) 36, 159, 162, 472
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 155
Hin1II CATG 2 cut(s) 58, 414
HinfI GANTC 3 cut(s) 85, 305, 548
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 90, 396, 418
Hpy188III TCNNGA 2 cut(s) 55, 344
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 99, 320
HpyCH4IV ACGT 2 cut(s) 27, 243
HpyCH4V TGCA 4 cut(s) 4, 200, 240, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 197
HpyF3I CTNAG 3 cut(s) 39, 124, 417
HpySE526I ACGT 2 cut(s) 27, 243
Hsp92II CATG 2 cut(s) 58, 414
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 90, 284, 391, 560
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 9 cut(s) 118, 168, 191, 329, 363, 375, 471, 545, 563
Lsp1109I GCAGC 2 cut(s) 47, 483
LweI GCATC 1 cut(s) 502
MaeII ACGT 2 cut(s) 27, 243
MalI GATC 4 cut(s) 92, 286, 393, 562
MboI GATC 4 cut(s) 90, 284, 391, 560
MboII GAAGA 9 cut(s) 112, 196, 314, 488, 577, 596, 635, 638, 641
MhlI GDGCHC 2 cut(s) 140, 193
MluCI AATT 1 cut(s) 527
MlyI GAGTC 1 cut(s) 314
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 1 cut(s) 679
MslI CAYNNNNRTG 3 cut(s) 53, 461, 498
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 155
Mva1269I GAATGC 2 cut(s) 4, 107
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 44, 197
NdeII GATC 4 cut(s) 90, 284, 391, 560
NlaIII CATG 2 cut(s) 58, 414
NlaIV GGNNCC 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 471
PctI GAATGC 2 cut(s) 4, 107
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 85, 548
PkrI GCNGC 4 cut(s) 37, 160, 163, 473
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 3 cut(s) 53, 461, 498
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 4 cut(s) 36, 159, 162, 472
Sau3AI GATC 4 cut(s) 90, 284, 391, 560
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 2 cut(s) 140, 193
SetI ASST 4 cut(s) 30, 40, 65, 246
SfaNI GCATC 1 cut(s) 502
SmiMI CAYNNNNRTG 3 cut(s) 53, 461, 498
Sse9I AATT 1 cut(s) 527
SsiI CCGC 5 cut(s) 113, 144, 159, 162, 309
TaaI ACNGT 2 cut(s) 99, 320
TaiI ACGT 2 cut(s) 30, 246
TaqI TCGA 1 cut(s) 563
TasI AATT 1 cut(s) 527
TauI GCSGC 2 cut(s) 161, 164
TfiI GAWTC 2 cut(s) 85, 548
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TscAI CASTG 2 cut(s) 102, 325
TseI GCWGC 2 cut(s) 35, 471
TspDTI ATGAA 1 cut(s) 623
TspRI CASTG 2 cut(s) 102, 325
XapI RAATTY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 588
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.