Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Forward (+)

28405533 .. 28407882

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGGAGGAGGAGTGGCGAGTGATGCAGGCTCGGCGGTGGCGCCGATTGCCAAGTGGAGGGATGAGTTTGCAAGGACATTTCAGTACTACTTGGACCGGTCGACTCCTAACCCGGTCCACAGGTGGCTGGGGACACTGGCTGTGGCTGCGATTTACGTGTTGCGAGTTTACTTGGTTCAGGGGTTCTACATTGTGTCTTATGGATTGGGGATTTATATCTTGAATCTGTTGATTGGGTTTTTGTCGCCGAAGGTTGATCCGGAGCTTGAGGGCTTGGATGGGGCTGCATTGCCGATGAGGGGATCGGATGAGTTTAAGCCATTTATCCGCCGCCTTCCTGAGTTCAAGTTCTGGTATTCCATTACAAAGGCTTTCTGTGTCGCCTTTCTGATGACCTTCTTCTCTGTTTTTGATGTCCCTGTTTTCTGGCCCATACTCCTCTGTTATTGGATTGTTCTTTTTGTCCTTACAATGAAGCGCCAAATCATGCACATGATCAAGTACAAGTATGTTCCATTCAGCATTGGAAAGCAGAGGTATGTAGGGAAGCCTGCTGGAAGTAGTAGTGGCTCTGCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

195

Amino Acids

22.0

Weight (kDa)

9.3

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	20 - 181	9.5e-76	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	4 cut(s)	38, 331, 334, 578
AclWI	GGATC	2 cut(s)	254, 313
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	89, 506
AfiI	CCNNNNNNNGG	2 cut(s)	60, 302
AflIII	ACRYGT	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	226, 349
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AlwI	GGATC	2 cut(s)	254, 313
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	149, 287
AsiGI	ACCGGT	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	46, 483
AspS9I	GGNCC	3 cut(s)	97, 118, 432
AsuC2I	CCSGG	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	97, 118
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	136, 274
BccI	CCATC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	116
BfoI	RGCGCY	2 cut(s)	47, 484
BisI	GCNGC	3 cut(s)	150, 288, 334
BlsI	GCNGC	3 cut(s)	151, 289, 335
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	97, 118
BmgT120I	GGNCC	3 cut(s)	97, 118, 432
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	99, 262
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 302
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	262
BseGI	GGATG	3 cut(s)	70, 286, 316
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	60, 302
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	3 cut(s)	24, 27, 431
BseXI	GCAGC	2 cut(s)	136, 274
BseYI	CCCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	433
BshNI	GGYRCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	100, 116, 263
BslFI	GGGAC	2 cut(s)	148, 404
BslI	CCNNNNNNNGG	2 cut(s)	60, 302
BsmFI	GGGAC	2 cut(s)	148, 404
BsnI	GGCC	1 cut(s)	433
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	259, 305, 498
BspACI	CCGC	4 cut(s)	38, 331, 334, 578
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	1 cut(s)	334
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	254, 313
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	99
BssMI	GATC	3 cut(s)	259, 305, 498
BssNI	GRCGYC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	31, 555
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	70, 286, 316
BstH2I	RGCGCY	2 cut(s)	47, 484
BstHHI	GCGC	2 cut(s)	46, 483
BstKTI	GATC	3 cut(s)	262, 308, 501
BstMBI	GATC	3 cut(s)	259, 305, 498
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 35, 50, 149
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	136, 274
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	70, 286, 316
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	31, 555
CfoI	GCGC	2 cut(s)	46, 483
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	97, 118, 432
Csp6I	GTAC	2 cut(s)	88, 505
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	2 cut(s)	490, 496
CviQI	GTAC	2 cut(s)	88, 505
DdeI	CTNAG	1 cut(s)	342
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	3 cut(s)	261, 307, 500
DpnII	GATC	3 cut(s)	259, 305, 498
EciI	GGCGGA	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	97, 118
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
FaeI	CATG	2 cut(s)	493, 499
FaiI	YATR	7 cut(s)	204, 219, 437, 491, 497, 513, 543
FaqI	GGGAC	2 cut(s)	148, 404
FatI	CATG	2 cut(s)	489, 495
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	150, 288, 334
FokI	GGATG	3 cut(s)	77, 293, 323
Fsp4HI	GCNGC	3 cut(s)	150, 288, 334
GlaI	GCGC	2 cut(s)	45, 482
GluI	GCNGC	3 cut(s)	150, 288, 334
GsaI	CCCAGC	1 cut(s)	134
HaeII	RGCGCY	2 cut(s)	47, 484
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	3 cut(s)	100, 116, 263
HhaI	GCGC	2 cut(s)	46, 483
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	493, 499
Hin6I	GCGC	2 cut(s)	44, 481
HinP1I	GCGC	2 cut(s)	44, 481
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	106, 226
HpaII	CCGG	3 cut(s)	100, 116, 263
Hpy166II	GTNNAC	3 cut(s)	105, 121, 172
Hpy188I	TCNGA	2 cut(s)	310, 393
Hpy188III	TCNNGA	3 cut(s)	223, 263, 341
Hpy8I	GTNNAC	3 cut(s)	105, 121, 172
HpyAV	CCTTC	3 cut(s)	247, 347, 409
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	29, 74, 290, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 35, 50, 149
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	493, 499
HspAI	GCGC	2 cut(s)	44, 481
KasI	GGCGCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	3 cut(s)	259, 305, 498
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	136, 274
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	159
MalI	GATC	3 cut(s)	261, 307, 500
MboI	GATC	3 cut(s)	259, 305, 498
MboII	GAAGA	1 cut(s)	394
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	5, 54, 265, 294, 452, 531
MroI	TCCGGA	1 cut(s)	262
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	3 cut(s)	100, 116, 263
MspR9I	CCNGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	26, 35, 50, 149
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	259, 305, 498
NlaIII	CATG	2 cut(s)	493, 499
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	151, 289, 335
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	97, 118, 432
RsaI	GTAC	2 cut(s)	89, 506
RsaNI	GTAC	2 cut(s)	88, 505
RseI	CAYNNNNRTG	1 cut(s)	494
SalI	GTCGAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	150, 288, 334
Sau3AI	GATC	3 cut(s)	259, 305, 498
Sau96I	GGNCC	3 cut(s)	97, 118, 432
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	6 cut(s)	128, 162, 258, 270, 401, 542
SfaNI	GCATC	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	45
SinI	GGWCC	2 cut(s)	97, 118
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	4 cut(s)	38, 331, 334, 578
SspDI	GGCGCC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	114
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	104
TatI	WGTACW	2 cut(s)	87, 504
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	2 cut(s)	149, 287
TspDTI	ATGAA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	2 cut(s)	97, 118
XmiI	GTMKAC	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.