Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357351.1

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Reverse (-)

630 .. 983

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggaaggagtggcaagtgatgcaggctcagcagtggcgcctcttgccaagtggagggatgagtttgcgaggacgtttcagtactatttggaccgttcgactcctaatccagtccataggtggctgggaacacttgctgtggctgccatttatgtgttgcgagtttacttggttcaggggttttacattgtgtcatacggcctcggaatttatatcttgaatctgttgattgggtttctctcgccaaaggttgatcccgagcttgaggccttggatggggcagcattgccaacgagaggctcagatgagtttaaaccattcatccgccgccttcctgagttcaagttctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

117

Amino Acids

13.22

Weight (kDa)

6.56

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	325, 328
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	54, 276, 296
AgsI	TTSAA	2 cut(s)	220, 343
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	199, 267
ApeKI	GCWGC	2 cut(s)	143, 281
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	130, 293
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	214
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	3 cut(s)	144, 282, 328
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	3 cut(s)	145, 283, 329
BmcAI	AGTACT	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	202, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 276, 296
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	202, 270
BseGI	GGATG	3 cut(s)	64, 280, 321
BseLI	CCNNNNNNNGG	3 cut(s)	54, 276, 296
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	42, 315, 327
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	130, 293
BseYI	CCCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	201, 269
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	257
BslI	CCNNNNNNNGG	3 cut(s)	54, 276, 296
BsnI	GGCC	2 cut(s)	201, 269
BsoBI	CYCGRG	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	325, 328
BspANI	GGCC	2 cut(s)	201, 269
BspCNI	CTCAG	3 cut(s)	41, 314, 328
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	202, 270
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	28, 301, 336
BstF5I	GGATG	3 cut(s)	64, 280, 321
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 44, 143
BstV1I	GCAGC	2 cut(s)	130, 293
BsuRI	GGCC	2 cut(s)	201, 269
BtsCI	GGATG	3 cut(s)	64, 280, 321
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	7 cut(s)	27, 124, 143, 201, 262, 269, 300
CviKI_1	RGCY	7 cut(s)	27, 124, 143, 201, 262, 269, 300
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	3 cut(s)	28, 301, 336
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraI	TTTAAA	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	270
FaiI	YATR	4 cut(s)	117, 153, 196, 213
Fnu4HI	GCNGC	3 cut(s)	144, 282, 328
FokI	GGATG	3 cut(s)	71, 287, 308
Fsp4HI	GCNGC	3 cut(s)	144, 282, 328
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	144, 282, 328
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	201, 269
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	100, 220
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	206, 304
Hpy188III	TCNNGA	3 cut(s)	217, 257, 335
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 44, 143
HpyF3I	CTNAG	3 cut(s)	28, 301, 336
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	6 cut(s)	9, 110, 123, 161, 334, 348
Lsp1109I	GCAGC	2 cut(s)	130, 293
LweI	GCATC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	74
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MluCI	AATT	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	48, 51, 63, 212, 259, 290
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	152
MssI	GTTTAAAC	1 cut(s)	313
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 44, 143
NarI	GGCGCC	1 cut(s)	38
NdeII	GATC	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	145, 283, 329
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	41
PmeI	GTTTAAAC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	3 cut(s)	144, 282, 328
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	91
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	94
SetI	ASST	4 cut(s)	77, 122, 252, 264
SfaNI	GCATC	1 cut(s)	10
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	207
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	325, 328
SspDI	GGCGCC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	2 cut(s)	143, 281
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.