Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Reverse (-)

61170195 .. 61172398

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAGGAGTGGCAAGTGATGCAGGCTCAGCAGTGGCGCCTCTTGCCAAGTGGAGGGATGAGTTTGCGAGGACGTTTCAGTACTATTTGGACCGTTCGACTCCTAATCCAGTCCATAGGTGGCTGGGAACACTTGCTGTGGCTGCGATTTATGTGTTGCGAGTTTACTTGGTTCAGGGGTTTTACATAGTGTCATACGGCCTCGGAATTTATATCTTGAATCTGTTGATTGGGTTTCTCTCGCCAAAGGTTGATCCGGAGCTTGAGGCCTTGGATGGGGCAGCATTGCCAACGAGAGGCTCAGATGAGTTTAAACCATTCATCCGCCGCCTTCCTGAGTTCAAGTTCTGGTATTCCATTACAAAGGCTTTCTGTGTCGCCTTTCTGATGACCTTCTTTTCTGTATTTGATGTCCCTGTTTTCTGGCCCATACTCCTCTGTTATTGGATTGTTCTTTTTGTCCTTACAATGAAGCGCCAAATCATGCACATGATCAAGTACAAGTATGTTCCATTCAGCGTTGGAAAGCAGAGGTATGTAGGGAAGCCTGCTGCAAGTAGTAGTGGCTCCGCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

192

Amino Acids

21.87

Weight (kDa)

9.3

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	18 - 179	3.6e-76	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccII	CGCG	1 cut(s)	572
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	4 cut(s)	325, 328, 570, 572
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	83, 500
AfiI	CCNNNNNNNGG	3 cut(s)	54, 276, 296
AgsI	TTSAA	2 cut(s)	220, 343
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
AlwI	GGATC	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	3 cut(s)	199, 267, 425
ApeKI	GCWGC	3 cut(s)	143, 281, 551
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	40, 477
AspS9I	GGNCC	2 cut(s)	91, 426
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	130, 293, 538
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	492
BfoI	RGCGCY	2 cut(s)	41, 478
BisI	GCNGC	4 cut(s)	144, 282, 328, 552
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	145, 283, 329, 553
BmcAI	AGTACT	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 426
BmiI	GGNNCC	2 cut(s)	39, 568
BmsI	GCATC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	202, 270, 570
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 276, 296
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	202, 270, 570
BseGI	GGATG	3 cut(s)	64, 280, 321
BseLI	CCNNNNNNNGG	3 cut(s)	54, 276, 296
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	42, 315, 327
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	130, 293, 538
BseYI	CCCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	201, 269, 427
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	54, 276, 296
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	201, 269, 427
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	253, 492
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	4 cut(s)	325, 328, 570, 572
BspANI	GGCC	3 cut(s)	201, 269, 427
BspCNI	CTCAG	3 cut(s)	41, 314, 328
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	39, 568
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	202, 270, 570
BssMI	GATC	2 cut(s)	253, 492
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	25, 549
BstDEI	CTNAG	3 cut(s)	28, 301, 336
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	64, 280, 321
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	2 cut(s)	41, 478
BstHHI	GCGC	2 cut(s)	40, 477
BstKTI	GATC	2 cut(s)	256, 495
BstMBI	GATC	2 cut(s)	253, 492
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 44, 143
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	3 cut(s)	130, 293, 538
BsuRI	GGCC	3 cut(s)	201, 269, 427
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	64, 280, 321
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	25, 549
CfoI	GCGC	2 cut(s)	40, 477
Cfr13I	GGNCC	2 cut(s)	91, 426
Cfr42I	CCGCGG	1 cut(s)	573
Csp6I	GTAC	2 cut(s)	82, 499
CviAII	CATG	2 cut(s)	484, 490
CviQI	GTAC	2 cut(s)	82, 499
DdeI	CTNAG	3 cut(s)	28, 301, 336
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	2 cut(s)	255, 494
DpnII	GATC	2 cut(s)	253, 492
DraI	TTTAAA	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	487, 493
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	483, 489
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	4 cut(s)	144, 282, 328, 552
FokI	GGATG	3 cut(s)	71, 287, 308
Fsp4HI	GCNGC	4 cut(s)	144, 282, 328, 552
GlaI	GCGC	2 cut(s)	39, 476
GluI	GCNGC	4 cut(s)	144, 282, 328, 552
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	2 cut(s)	41, 478
HaeIII	GGCC	3 cut(s)	201, 269, 427
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	2 cut(s)	40, 477
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	487, 493
Hin6I	GCGC	2 cut(s)	38, 475
HinP1I	GCGC	2 cut(s)	38, 475
HinfI	GANTC	2 cut(s)	100, 220
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	206, 304, 387
Hpy188III	TCNNGA	3 cut(s)	217, 257, 335
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	341, 403
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	23, 487, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 44, 143
HpyF3I	CTNAG	3 cut(s)	28, 301, 336
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	487, 493
HspAI	GCGC	2 cut(s)	38, 475
KasI	GGCGCC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	492
KspI	CCGCGG	1 cut(s)	573
Kzo9I	GATC	2 cut(s)	253, 492
LmnI	GCTCC	2 cut(s)	259, 572
Lsp1109I	GCAGC	3 cut(s)	130, 293, 538
LweI	GCATC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	74
MalI	GATC	2 cut(s)	255, 494
MboI	GATC	2 cut(s)	253, 492
MluCI	AATT	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	48, 51, 63, 212, 259, 290, 446, 525
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	257
MssI	GTTTAAAC	1 cut(s)	313
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 44, 143
NarI	GGCGCC	1 cut(s)	38
NdeII	GATC	2 cut(s)	253, 492
NlaIII	CATG	2 cut(s)	487, 493
NlaIV	GGNNCC	2 cut(s)	39, 568
PceI	AGGCCT	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	145, 283, 329, 553
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	41
PmeI	GTTTAAAC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	39, 568
PspPI	GGNCC	2 cut(s)	91, 426
RsaI	GTAC	2 cut(s)	83, 500
RsaNI	GTAC	2 cut(s)	82, 499
RseI	CAYNNNNRTG	1 cut(s)	488
SacII	CCGCGG	1 cut(s)	573
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	4 cut(s)	144, 282, 328, 552
Sau3AI	GATC	2 cut(s)	253, 492
Sau96I	GGNCC	2 cut(s)	91, 426
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	94
SetI	ASST	6 cut(s)	77, 122, 252, 264, 395, 536
SfaNI	GCATC	1 cut(s)	10
SfoI	GGCGCC	1 cut(s)	39
Sfr303I	CCGCGG	1 cut(s)	573
SgrBI	CCGCGG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	207
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	4 cut(s)	325, 328, 570, 572
SspDI	GGCGCC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	207
TatI	WGTACW	2 cut(s)	81, 498
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	3 cut(s)	143, 281, 551
TspDTI	ATGAA	2 cut(s)	310, 485
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.