Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Forward (+)

2123380 .. 2125538

Gene Structure 2159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1029200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAGGAGTTGGGGGCGGCGATGCTGGCTCGGCGGTGGCGCCGTTGGCGAAGTGGAGGGACGAATTGTCAAGGGCATTTCAGTACTACTTGGACCGATCGACCCCGAATCCGGTTCACAGGTGGCTGGGGACTCTTGCCGTGGTGGCGGTTTATGTGCTCCGAGTTTTCTATGTTCAAGGGTTCTACATTGTGTCATACGGACTGGGAATTTATATCTTGAATCTGTTGATTGGGTTTCTGTCACCAAAGGTCGATCCGGAGCTCGAAGCGTTGGACGGGGCTTCGCTGCCAACCCGAGGTTCGGATGAGTTTAAGCCGTTCATTCGCCGCCTTCCCGAGTTCAAGTTCTGGTATTCCATTACAAAGGCTTTCTGTGTCGCTTTTCTGATGACCTTCTTCTCTGTGTTTGATGTCCCCGTTTTCTGGCCCATTCTCCTCTTTTATTGGGTCGTTCTTTTTACTCTTACAATGAAGCGCCAGATAATGCACATGATTAAGTACAAATATGTACCGTTCAGCATCGGAAAACAGAGGTATACAGGGAAGAGACCTGATGCTGCGAACTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

192

Amino Acids

21.94

Weight (kDa)

9.38

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	19 - 181	5.5e-76	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	539
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	4 cut(s)	18, 35, 149, 331
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	86, 503, 513
AfiI	CCNNNNNNNGG	4 cut(s)	112, 299, 304, 426
AgsI	TTSAA	3 cut(s)	179, 223, 346
AhdI	GACNNNNNGTC	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw21I	GWGCWC	2 cut(s)	162, 267
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	2 cut(s)	297, 338
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	289, 560
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	43, 480
AspS9I	GGNCC	2 cut(s)	94, 429
AsuHPI	GGTGA	1 cut(s)	237
AvaI	CYCGRG	2 cut(s)	297, 338
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	162, 267
BbvI	GCAGC	2 cut(s)	276, 547
BceAI	ACGGC	3 cut(s)	28, 125, 304
BcoDI	GTCTC	1 cut(s)	544
BfoI	RGCGCY	2 cut(s)	44, 481
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	19, 290, 331, 561
BlsI	GCNGC	4 cut(s)	20, 291, 332, 562
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	94
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmeT110I	CYCGRG	2 cut(s)	297, 338
BmgT120I	GGNCC	2 cut(s)	94, 429
BmiI	GGNNCC	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	13, 531, 547
BmuI	ACTGGG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	141, 298
BsaWI	WCCGGW	2 cut(s)	112, 259
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 299, 304, 426
Bse1I	ACTGG	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	141, 298
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	4 cut(s)	112, 299, 304, 426
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	276, 547
BseYI	CCCAGC	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	162, 267
BsiHKCI	CYCGRG	2 cut(s)	297, 338
BsiSI	CCGG	2 cut(s)	113, 260
BslFI	GGGAC	3 cut(s)	74, 145, 401
BslI	CCNNNNNNNGG	4 cut(s)	112, 299, 304, 426
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	3 cut(s)	74, 145, 401
BsnI	GGCC	1 cut(s)	430
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	2 cut(s)	297, 338
Bsp1286I	GDGCHC	2 cut(s)	162, 267
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	98, 256
BspACI	CCGC	4 cut(s)	18, 35, 149, 331
BspANI	GGCC	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	141, 298
BssMI	GATC	2 cut(s)	98, 256
BssNAI	GTATAC	1 cut(s)	540
BssNI	GRCGYC	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	568
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	313
BstH2I	RGCGCY	2 cut(s)	44, 481
BstHHI	GCGC	2 cut(s)	43, 480
BstKTI	GATC	2 cut(s)	101, 259
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	98, 256
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 32, 47, 146
BstV1I	GCAGC	2 cut(s)	276, 547
BstZ17I	GTATAC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	43, 480
Cfr13I	GGNCC	2 cut(s)	94, 429
Csp6I	GTAC	3 cut(s)	85, 502, 512
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	7 cut(s)	30, 127, 265, 284, 319, 371, 430
CviKI_1	RGCY	7 cut(s)	30, 127, 265, 284, 319, 371, 430
CviQI	GTAC	3 cut(s)	85, 502, 512
DdeI	CTNAG	1 cut(s)	568
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	2 cut(s)	100, 258
DpnII	GATC	2 cut(s)	98, 256
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	542
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	297, 338
EcoICRI	GAGCTC	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	1 cut(s)	496
FaiI	YATR	7 cut(s)	156, 174, 199, 216, 494, 510, 540
FaqI	GGGAC	3 cut(s)	74, 145, 401
FatI	CATG	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	4 cut(s)	19, 290, 331, 561
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	19, 290, 331, 561
GlaI	GCGC	2 cut(s)	42, 479
GluI	GCNGC	4 cut(s)	19, 290, 331, 561
GsaI	CCCAGC	1 cut(s)	131
HaeII	RGCGCY	2 cut(s)	44, 481
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	2 cut(s)	113, 260
HhaI	GCGC	2 cut(s)	43, 480
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	2 cut(s)	41, 478
HinP1I	GCGC	2 cut(s)	41, 478
HinfI	GANTC	3 cut(s)	109, 133, 223
HpaII	CCGG	2 cut(s)	113, 260
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	2 cut(s)	118, 540
Hpy188I	TCNGA	5 cut(s)	164, 307, 390, 527, 571
Hpy188III	TCNNGA	3 cut(s)	220, 260, 338
Hpy8I	GTNNAC	2 cut(s)	118, 540
HpyAV	CCTTC	2 cut(s)	344, 406
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 32, 47, 146
HpyF3I	CTNAG	1 cut(s)	568
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	2 cut(s)	41, 478
KasI	GGCGCC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	98, 256
LmnI	GCTCC	2 cut(s)	165, 262
Lsp1109I	GCAGC	2 cut(s)	276, 547
LweI	GCATC	3 cut(s)	13, 531, 547
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	100, 258
MboI	GATC	2 cut(s)	98, 256
MboII	GAAGA	2 cut(s)	391, 559
MhlI	GDGCHC	2 cut(s)	162, 267
MluCI	AATT	2 cut(s)	65, 210
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	4 cut(s)	51, 293, 449, 528
MroI	TCCGGA	1 cut(s)	259
MseI	TTAA	2 cut(s)	315, 498
MspI	CCGG	2 cut(s)	113, 260
MwoI	GCNNNNNNNGC	4 cut(s)	27, 32, 47, 146
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	2 cut(s)	98, 256
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	109, 223
PkrI	GCNGC	4 cut(s)	20, 291, 332, 562
Ple19I	CGATCG	1 cut(s)	101
PleI	GAGTC	1 cut(s)	127
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	94, 429
PvuI	CGATCG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	86, 503, 513
RsaNI	GTAC	3 cut(s)	85, 502, 512
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	315, 498
SatI	GCNGC	4 cut(s)	19, 290, 331, 561
Sau3AI	GATC	2 cut(s)	98, 256
Sau96I	GGNCC	2 cut(s)	94, 429
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	162, 267
SetI	ASST	7 cut(s)	125, 255, 267, 304, 398, 539, 556
SfaNI	GCATC	3 cut(s)	13, 531, 547
SfoI	GGCGCC	1 cut(s)	42
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	65, 210
SsiI	CCGC	4 cut(s)	18, 35, 149, 331
SspDI	GGCGCC	1 cut(s)	40
SstI	GAGCTC	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	101, 255, 267
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	65, 210
TatI	WGTACW	2 cut(s)	84, 501
TauI	GCSGC	2 cut(s)	21, 333
TfiI	GAWTC	2 cut(s)	109, 223
Tru1I	TTAA	2 cut(s)	315, 498
Tru9I	TTAA	2 cut(s)	315, 498
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	2 cut(s)	289, 560
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	313, 488
TspGWI	ACGGA	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.