Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Reverse (-)

60661083 .. 60662723

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGAGTCTAATCTATCGAATTGAGCTAGCTTTTGTTGGCTCAGCAGTGGCGCCTCTTGCCAAGTGGAGGGATGAGTTTGCGAGGACGTTTCAGTACTATTTGGACCGTTCCACTCCTAATCCAGTCCATAGGTGGCTGGGAACACTTGCTGTGGCTGCCATTTATGTGTTGCGAGTTTACTTGGTTCAGGGGTTTTACATTGTGTCATACGGCCTCGGAATTTATATCTTGAATCTGTTGATTGGGTTTCTCTCGCCAAAGGTTGATCCCGAGCTTGAGGCCTTGGATGGGGCAGCATTGCCAACGAGAGGCTCAGATGAGTTTAAACCATTCATCCGCCGCCTTCCTGAGTTCAAGTTCTGGTATTCCATTACAAAGGCTTTCTGTGTCGCCTTTCTGATGACCTTCTTTTCTGTATTTGATGTCCCTGTTTTCTGGCCCATACTCCTCTGTTATTGGATTGTTCTTTTTGTCCTTACAATGAAGCGCCAAATCATGCACATGATCAAGTACAAGTATGTTCCATTCAGCATTGGAAAGCAGAGGTATGTAGGGAAGCCTGCTGCAAGTAGTAGTGGCTCCGCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

197

Amino Acids

22.69

Weight (kDa)

9.39

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	23 - 184	3.5e-76	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	1 cut(s)	587
AciI	CCGC	4 cut(s)	340, 343, 585, 587
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	98, 515
AfiI	CCNNNNNNNGG	3 cut(s)	69, 291, 311
AgsI	TTSAA	2 cut(s)	235, 358
AluBI	AGCT	3 cut(s)	28, 32, 277
AluI	AGCT	3 cut(s)	28, 32, 277
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	214, 282, 440
ApeKI	GCWGC	3 cut(s)	158, 296, 566
ApoI	RAATTY	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	55, 492
AspS9I	GGNCC	2 cut(s)	106, 441
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	145, 308, 553
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	229
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	1 cut(s)	29
BfoI	RGCGCY	2 cut(s)	56, 493
BisI	GCNGC	4 cut(s)	159, 297, 343, 567
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	4 cut(s)	160, 298, 344, 568
BmcAI	AGTACT	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	106, 441
BmiI	GGNNCC	2 cut(s)	54, 583
BmtI	GCTAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	217, 285, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 291, 311
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	299
BseDI	CCNNGG	3 cut(s)	217, 285, 585
BseGI	GGATG	3 cut(s)	79, 295, 336
BseLI	CCNNNNNNNGG	3 cut(s)	69, 291, 311
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	57, 330, 342
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	145, 308, 553
BseYI	CCCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	3 cut(s)	216, 284, 442
BshNI	GGYRCC	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	69, 291, 311
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	216, 284, 442
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	268, 507
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	4 cut(s)	340, 343, 585, 587
BspANI	GGCC	3 cut(s)	216, 284, 442
BspCNI	CTCAG	3 cut(s)	56, 329, 343
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	2 cut(s)	54, 583
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	217, 285, 585
BssMI	GATC	2 cut(s)	268, 507
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	30, 564
BstDEI	CTNAG	3 cut(s)	43, 316, 351
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	3 cut(s)	79, 295, 336
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	2 cut(s)	56, 493
BstHHI	GCGC	2 cut(s)	55, 492
BstKTI	GATC	2 cut(s)	271, 510
BstMBI	GATC	2 cut(s)	268, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 158
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	3 cut(s)	145, 308, 553
BsuRI	GGCC	3 cut(s)	216, 284, 442
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	3 cut(s)	79, 295, 336
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	30, 564
CfoI	GCGC	2 cut(s)	55, 492
Cfr13I	GGNCC	2 cut(s)	106, 441
Cfr42I	CCGCGG	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	97, 514
CviAII	CATG	2 cut(s)	499, 505
CviQI	GTAC	2 cut(s)	97, 514
DdeI	CTNAG	3 cut(s)	43, 316, 351
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	2 cut(s)	270, 509
DpnII	GATC	2 cut(s)	268, 507
DraI	TTTAAA	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	502, 508
FaiI	YATR	9 cut(s)	132, 168, 211, 228, 446, 500, 506, 522, 552
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	498, 504
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	159, 297, 343, 567
FokI	GGATG	3 cut(s)	86, 302, 323
Fsp4HI	GCNGC	4 cut(s)	159, 297, 343, 567
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	54, 491
GluI	GCNGC	4 cut(s)	159, 297, 343, 567
GsaI	CCCAGC	1 cut(s)	143
HaeII	RGCGCY	2 cut(s)	56, 493
HaeIII	GGCC	3 cut(s)	216, 284, 442
HhaI	GCGC	2 cut(s)	55, 492
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	502, 508
Hin6I	GCGC	2 cut(s)	53, 490
HinP1I	GCGC	2 cut(s)	53, 490
HinfI	GANTC	2 cut(s)	7, 235
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	221, 319, 402
Hpy188III	TCNNGA	3 cut(s)	232, 272, 350
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	356, 418
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	502, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 158
HpyF3I	CTNAG	3 cut(s)	43, 316, 351
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	502, 508
HspAI	GCGC	2 cut(s)	53, 490
KasI	GGCGCC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	507
KspI	CCGCGG	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	268, 507
LmnI	GCTCC	1 cut(s)	587
LpnPI	CCDG	8 cut(s)	125, 138, 176, 349, 363, 424, 444, 576
Lsp1109I	GCAGC	3 cut(s)	145, 308, 553
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	89
MalI	GATC	2 cut(s)	270, 509
MboI	GATC	2 cut(s)	268, 507
MluCI	AATT	2 cut(s)	21, 222
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	8 cut(s)	63, 66, 78, 227, 274, 305, 461, 540
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	2 cut(s)	167, 503
MspA1I	CMGCKG	1 cut(s)	587
MssI	GTTTAAAC	1 cut(s)	328
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	59, 158
NarI	GGCGCC	1 cut(s)	53
NdeII	GATC	2 cut(s)	268, 507
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	502, 508
NlaIV	GGNNCC	2 cut(s)	54, 583
PceI	AGGCCT	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	160, 298, 344, 568
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	56
PmeI	GTTTAAAC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	54, 583
PspPI	GGNCC	2 cut(s)	106, 441
RsaI	GTAC	2 cut(s)	98, 515
RsaNI	GTAC	2 cut(s)	97, 514
RseI	CAYNNNNRTG	2 cut(s)	167, 503
SacII	CCGCGG	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	159, 297, 343, 567
Sau3AI	GATC	2 cut(s)	268, 507
Sau96I	GGNCC	2 cut(s)	106, 441
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	1 cut(s)	16
SetI	ASST	8 cut(s)	30, 34, 92, 137, 267, 279, 410, 551
SfoI	GGCGCC	1 cut(s)	54
Sfr303I	CCGCGG	1 cut(s)	588
SgrBI	CCGCGG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	167, 503
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	21, 222
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	4 cut(s)	340, 343, 585, 587
SspDI	GGCGCC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	19
TasI	AATT	2 cut(s)	21, 222
TatI	WGTACW	2 cut(s)	96, 513
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	3 cut(s)	158, 296, 566
TspDTI	ATGAA	2 cut(s)	325, 500
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.