Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Forward (+)

34145489 .. 34147738

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G377000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAGGAGTGGGGGCTGATGCTGGCTCTGCTGTGGCGCCGTTTGCCAAGTGGAGAGACGAGTTTTCAAGGACATTTCAGTACTATTTGGACCGTTCGACCCCTAACCCTGTCTACAGGTGGCTGGGGACTCTTGCTGTAGCAGCCATTTATGTGCTCCGAGTTTACTATGTTCAAGGGTTTTACATTGTGTCGTATGGCCTGGGAATCTATATCTTGAATCTATTGATTGGGTTTCTCTCACCAAAGGTTGATCCTGAGCTTGAAGCCTTGGATGGGGCTTCACTGCCAACAAGAGGTTCAGATGAGTTTAAGCCATTCATCCGCCGGCTACCCGAGTTCAAGTTCTGGTATTCCATTACAAAGGCTTTCTGTGTGGCATTTCTGATGACCTTCTTTTCCATATTTGATGTCCCTGTTTTCTGGCCCATTCTCCTCTGTTATTGGATTGTTCTTTTTGTTCTTACAATGAAGCGCCAAATTCTGCACATGATTAAGTACAAATATATACCATTCAGCATCGGGAAGCAGAGGTATACAGGGAAGAAGCCTGCTACAAGTAGTGGTGGTTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

193

Amino Acids

22.06

Weight (kDa)

9.35

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	2 cut(s)	114, 536
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	83, 500
AfiI	CCNNNNNNNGG	2 cut(s)	276, 296
AgsI	TTSAA	5 cut(s)	69, 176, 220, 266, 343
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	199, 425
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	2 cut(s)	40, 477
AspS9I	GGNCC	2 cut(s)	91, 426
AsuHPI	GGTGA	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	115, 138
BfoI	RGCGCY	2 cut(s)	41, 478
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	91, 426
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	10, 528
Bpu10I	CCTNAGC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	202, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 296
Bse118I	RCCGGY	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	202, 270
BseGI	GGATG	2 cut(s)	280, 321
BseLI	CCNNNNNNNGG	2 cut(s)	276, 296
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	201, 427
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	2 cut(s)	142, 398
BslI	CCNNNNNNNGG	2 cut(s)	276, 296
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	142, 398
BsnI	GGCC	2 cut(s)	201, 427
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	201, 427
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	202, 270
BssMI	GATC	1 cut(s)	253
BssNAI	GTATAC	1 cut(s)	537
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	270
Bst1107I	GTATAC	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	25, 329, 552
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	280, 321
BstH2I	RGCGCY	2 cut(s)	41, 478
BstHHI	GCGC	2 cut(s)	40, 477
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 44, 143
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	2 cut(s)	115, 138
BstV1I	GCAGC	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	201, 427
BtsCI	GGATG	2 cut(s)	280, 321
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	25, 329, 552
CfoI	GCGC	2 cut(s)	40, 477
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	91, 426
Csp6I	GTAC	2 cut(s)	82, 499
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	2 cut(s)	82, 499
DdeI	CTNAG	1 cut(s)	258
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	493
FaiI	YATR	9 cut(s)	153, 171, 198, 213, 404, 491, 507, 509, 537
FaqI	GGGAC	2 cut(s)	142, 398
FatI	CATG	1 cut(s)	489
FblI	GTMKAC	2 cut(s)	114, 536
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	287, 308
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	2 cut(s)	39, 476
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	2 cut(s)	41, 478
HaeIII	GGCC	2 cut(s)	201, 427
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	2 cut(s)	40, 477
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	2 cut(s)	38, 475
HinP1I	GCGC	2 cut(s)	38, 475
HinfI	GANTC	3 cut(s)	130, 207, 220
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	3 cut(s)	115, 166, 537
Hpy188I	TCNGA	4 cut(s)	161, 304, 387, 574
Hpy188III	TCNNGA	3 cut(s)	217, 257, 523
Hpy8I	GTNNAC	3 cut(s)	115, 166, 537
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 44, 143
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	2 cut(s)	38, 475
KasI	GGCGCC	1 cut(s)	37
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	10, 528
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	290, 446, 525
MroNI	GCCGGC	1 cut(s)	327
MseI	TTAA	2 cut(s)	312, 495
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	29, 44, 143
NaeI	GCCGGC	1 cut(s)	329
NarI	GGCGCC	1 cut(s)	38
NdeII	GATC	1 cut(s)	253
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	207, 220
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	91, 426
PsrI	GAACNNNNNNTAC	1 cut(s)	553
RsaI	GTAC	2 cut(s)	83, 500
RsaNI	GTAC	2 cut(s)	82, 499
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	312, 495
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	91, 426
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	122, 252, 264, 301, 395, 536
SfaNI	GCATC	2 cut(s)	10, 528
SfcI	CTRYAG	2 cut(s)	115, 138
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	1 cut(s)	325
SspDI	GGCGCC	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	480
TatI	WGTACW	2 cut(s)	81, 498
TfiI	GAWTC	2 cut(s)	207, 220
Tru1I	TTAA	2 cut(s)	312, 495
Tru9I	TTAA	2 cut(s)	312, 495
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	310, 485
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	480
XmiI	GTMKAC	2 cut(s)	114, 536
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.