Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011658

Physical Location & Seq

Genomic Coordinates Forward (+)

1464873 .. 1467276

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1024700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTCAGGAAAATATTGATGGAAGGAGTTGAGGGCGGCGATGCTGGGTCGGCAGTGGCGCCGTTGGCGAAGTGGAGAGACGAATTTTCAAGGACATTTCAGTACTACTTGGACCGGTCGACCCCGAACCCGGTTCACAGGTGGCTGGGGACTCTTGCTGTGGCGGTGGTTTACGTGCTCCGAGTTTACTATATTCAAGGGTTCTACATTGTGTCATACGGCCTGGGAATCTATATCTTGAATCTGTTGATTGGTTTTCTGTCACCAAAGGTTGATCCAGAGCTCGAAGCGGACGGGGCTTCCCTGCCAACCCGAGGTTCCGATGAGTTTAAGCCGTTCATTCGCCGCCTTCCCGAGTTCAAATTCTGGTATTCCATTACAAAGGCTTTCTGTATCGCCTTTCTGATGACCTTCTTCTCCGCGTTTGACGTCCCTGTTTTCTGGCCCATTCTCCTCTGTTATTGGATCGTTCTTTTTGCTCTTACAATGAAGCGCCAGATAATGCACATGATTAAGTACAAATATGTACCATTCAGCATCGGAAAACAGAGGTATACAGGGCAGAGACGTGCTGCAGCGAACTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

197

Amino Acids

22.72

Weight (kDa)

9.49

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	25 - 186	1.4e-76	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39600 FvH4_2g39600
malus_domestica	MD08G1029200.v1.1 MD15G1024700.v1.1
prunus_persica	Prupe.1G377000_v2.0.a1
pyrus_communis	pycom08g02300
rosa_chinensis	RchiOBHm_Chr6g0301321
rosa_multiflora	Rmu_co8357351.1_g000001 Rmu_sc0003197.1_g000010 Rmu_sc0013354.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166920
rosa_rugosa	Rorug06G0303400 Rorug06G0303500 Rorug06G0303600
rosa_samantha	Rh6AG417200 Rh6BG423800 Rh6CG431000 Rh6DG416900
rosa_wichuraiana	Rw6G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	119, 554
AccII	CGCG	1 cut(s)	422
AciI	CCGC	5 cut(s)	36, 164, 290, 346, 420
AclWI	GGATC	2 cut(s)	269, 473
AcsI	RAATTY	2 cut(s)	83, 362
AcyI	GRCGYC	2 cut(s)	59, 429
AfaI	GTAC	3 cut(s)	104, 518, 528
AfiI	CCNNNNNNNGG	2 cut(s)	130, 314
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	4 cut(s)	90, 197, 241, 361
AjiI	CACGTC	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	2 cut(s)	180, 285
Alw26I	GTCTC	2 cut(s)	72, 559
AlwI	GGATC	2 cut(s)	269, 473
Ama87I	CYCGRG	2 cut(s)	312, 353
AoxI	GGCC	2 cut(s)	220, 443
ApeKI	GCWGC	2 cut(s)	572, 575
ApoI	RAATTY	2 cut(s)	83, 362
AsiGI	ACCGGT	1 cut(s)	114
AspLEI	GCGC	2 cut(s)	61, 495
AspS9I	GGNCC	2 cut(s)	112, 444
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	255
AvaI	CYCGRG	2 cut(s)	312, 353
AvaII	GGWCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	180, 285
BbvI	GCAGC	2 cut(s)	559, 587
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	3 cut(s)	46, 235, 319
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	72, 559
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	2 cut(s)	62, 496
BisI	GCNGC	4 cut(s)	37, 346, 573, 576
BlsI	GCNGC	4 cut(s)	38, 347, 574, 577
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	131, 224
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	312, 353
BmgBI	CACGTC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	112, 444
BmiI	GGNNCC	2 cut(s)	60, 319
BmrFI	CCNGG	2 cut(s)	131, 224
BmsI	GCATC	2 cut(s)	31, 546
BpuMI	CCSGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	175
BsaHI	GRCGYC	2 cut(s)	59, 429
BsaJI	CCNNGG	2 cut(s)	223, 313
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 314
Bse118I	RCCGGY	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	223, 313
BseLI	CCNNNNNNNGG	2 cut(s)	130, 314
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	559, 587
BseYI	CCCAGC	2 cut(s)	44, 145
Bsh1236I	CGCG	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	222, 445
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	180, 285
BsiHKCI	CYCGRG	2 cut(s)	312, 353
BsiSI	CCGG	2 cut(s)	115, 131
BslFI	GGGAC	2 cut(s)	163, 416
BslI	CCNNNNNNNGG	2 cut(s)	130, 314
BsmAI	GTCTC	2 cut(s)	72, 559
BsmBI	CGTCTC	2 cut(s)	72, 559
BsmFI	GGGAC	2 cut(s)	163, 416
BsnI	GGCC	2 cut(s)	222, 445
BsoBI	CYCGRG	2 cut(s)	312, 353
Bsp1286I	GDGCHC	2 cut(s)	180, 285
Bsp143I	GATC	2 cut(s)	274, 465
BspACI	CCGC	5 cut(s)	36, 164, 290, 346, 420
BspANI	GGCC	2 cut(s)	222, 445
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	60, 319
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	2 cut(s)	269, 473
BspT107I	GGYRCC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	223, 313
BssMI	GATC	2 cut(s)	274, 465
BssNAI	GTATAC	1 cut(s)	555
BssNI	GRCGYC	2 cut(s)	59, 429
Bst1107I	GTATAC	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	224
BstACI	GRCGYC	2 cut(s)	59, 429
BstBAI	YACGTR	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	583
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	2 cut(s)	62, 496
BstHHI	GCGC	2 cut(s)	61, 495
BstKTI	GATC	2 cut(s)	277, 468
BstMAI	GTCTC	2 cut(s)	72, 559
BstMBI	GATC	2 cut(s)	274, 465
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 65, 296
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	129, 222
BstSFI	CTRYAG	1 cut(s)	573
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	559, 587
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	222, 445
BtgZI	GCGATG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
CfoI	GCGC	2 cut(s)	61, 495
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	112, 444
Csp6I	GTAC	3 cut(s)	103, 517, 527
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	7 cut(s)	145, 222, 283, 299, 334, 386, 445
CviKI_1	RGCY	7 cut(s)	145, 222, 283, 299, 334, 386, 445
CviQI	GTAC	3 cut(s)	103, 517, 527
DdeI	CTNAG	1 cut(s)	583
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	2 cut(s)	276, 467
DpnII	GATC	2 cut(s)	274, 465
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	2 cut(s)	312, 353
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
Esp3I	CGTCTC	2 cut(s)	72, 559
FaeI	CATG	1 cut(s)	511
FaiI	YATR	6 cut(s)	192, 217, 234, 509, 525, 555
FaqI	GGGAC	2 cut(s)	163, 416
FatI	CATG	1 cut(s)	507
FblI	GTMKAC	2 cut(s)	119, 554
Fnu4HI	GCNGC	4 cut(s)	37, 346, 573, 576
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	37, 346, 573, 576
GlaI	GCGC	2 cut(s)	60, 494
GluI	GCNGC	4 cut(s)	37, 346, 573, 576
GsaI	CCCAGC	2 cut(s)	48, 149
HaeII	RGCGCY	2 cut(s)	62, 496
HaeIII	GGCC	2 cut(s)	222, 445
HapII	CCGG	2 cut(s)	115, 131
HhaI	GCGC	2 cut(s)	61, 495
Hin1I	GRCGYC	2 cut(s)	59, 429
Hin1II	CATG	1 cut(s)	511
Hin6I	GCGC	2 cut(s)	59, 493
HinP1I	GCGC	2 cut(s)	59, 493
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	151, 228, 241
HpaII	CCGG	2 cut(s)	115, 131
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	5 cut(s)	120, 136, 172, 187, 555
Hpy188I	TCNGA	5 cut(s)	182, 322, 405, 542, 586
Hpy188III	TCNNGA	4 cut(s)	7, 238, 278, 353
Hpy8I	GTNNAC	5 cut(s)	120, 136, 172, 187, 555
HpyAV	CCTTC	3 cut(s)	17, 359, 421
HpyCH4IV	ACGT	3 cut(s)	174, 429, 568
HpyCH4V	TGCA	2 cut(s)	505, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 65, 296
HpyF3I	CTNAG	1 cut(s)	583
HpySE526I	ACGT	3 cut(s)	174, 429, 568
Hsp92I	GRCGYC	2 cut(s)	59, 429
Hsp92II	CATG	1 cut(s)	511
HspAI	GCGC	2 cut(s)	59, 493
KasI	GGCGCC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	274, 465
LmnI	GCTCC	1 cut(s)	183
Lsp1109I	GCAGC	2 cut(s)	559, 587
LweI	GCATC	2 cut(s)	31, 546
MaeII	ACGT	3 cut(s)	174, 429, 568
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	2 cut(s)	276, 467
MboI	GATC	2 cut(s)	274, 465
MboII	GAAGA	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	180, 285
MluCI	AATT	2 cut(s)	83, 362
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	25, 308, 464, 543
MseI	TTAA	2 cut(s)	330, 513
MspI	CCGG	2 cut(s)	115, 131
MspR9I	CCNGG	2 cut(s)	131, 224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	50, 65, 296
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	274, 465
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	2 cut(s)	60, 319
NmuCI	GTSAC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	228, 241
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	38, 347, 574, 577
PleI	GAGTC	1 cut(s)	145
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	2 cut(s)	44, 145
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	60, 319
PspPI	GGNCC	2 cut(s)	112, 444
PstI	CTGCAG	1 cut(s)	577
RsaI	GTAC	3 cut(s)	104, 518, 528
RsaNI	GTAC	3 cut(s)	103, 517, 527
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	330, 513
SatI	GCNGC	4 cut(s)	37, 346, 573, 576
Sau3AI	GATC	2 cut(s)	274, 465
Sau96I	GGNCC	2 cut(s)	112, 444
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	131, 224
SduI	GDGCHC	2 cut(s)	180, 285
SetI	ASST	9 cut(s)	143, 177, 273, 285, 319, 413, 432, 554, 571
SfaNI	GCATC	2 cut(s)	31, 546
SfcI	CTRYAG	1 cut(s)	573
SfoI	GGCGCC	1 cut(s)	60
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	2 cut(s)	83, 362
SsiI	CCGC	5 cut(s)	36, 164, 290, 346, 420
SspDI	GGCGCC	1 cut(s)	58
SspI	AATATT	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	129, 222
TaiI	ACGT	3 cut(s)	177, 432, 571
TaqI	TCGA	2 cut(s)	119, 285
TasI	AATT	2 cut(s)	83, 362
TatI	WGTACW	2 cut(s)	102, 516
TauI	GCSGC	2 cut(s)	39, 348
TfiI	GAWTC	2 cut(s)	228, 241
Tru1I	TTAA	2 cut(s)	330, 513
Tru9I	TTAA	2 cut(s)	330, 513
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	2 cut(s)	572, 575
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	328, 503
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	83, 362
XmiI	GTMKAC	2 cut(s)	119, 554
ZraI	GACGTC	1 cut(s)	430
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.