Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016776

Physical Location & Seq

Genomic Coordinates Reverse (-)

28458426 .. 28459316

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCCCATTGTTTTCCAAGGAAAGCAACAGCCAGCTACGACCCACTTCCCTCATTCTCTTCCTCTCCACAGCCTCTATATAAACAGCACCATTGCCATTCTCTATGCTCAAAGCTACCTGAGCTCATTATTCATTACCCTCATCATCAACCATTTCATATCATTAACATATCTTCACTCATTTCAATGGCCTCATCGGGATCATGGACATCAAGGCAAAACAAAATGTTCGAGAATGCTCTAGCAGTGTATGATAAGGACACCCCCGATAGGTGGCACAATATGGCGAGAGCTGTGGGTGGTAAGACAGCGGAGGAAGTGAAGAGACACTATGAAAGGCTTGTCGAAGATGTTAACCGGATTGAGTCCGGCGAAGTGCCATTGCCAAATTACACCAGGACATCAAAATCTGGTTCAGCTGGGAGCAACAAATCAGCCTACACTAACTCCATGGACATTGAAGACCAAAGGTTCAAGAGTCTGAAAATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

165

Amino Acids

18.66

Weight (kDa)

8.98

Isoelectric Point (pI)

70.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39750
malus_domestica	MD08G1031200.v1.1 MD15G1027000.v1.1
prunus_persica	Prupe.1G378800_v2.0.a1
pyrus_communis	pycom08g02460 pycom15g02300
rosa_chinensis	RchiOBHm_Chr6g0301111
rosa_roxburghii	Rroxscaffold_172G00445520 Rroxscaffold_7G00167150
rosa_rugosa	Rorug06G0301400
rosa_samantha	Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	270, 273
AgsI	TTSAA	3 cut(s)	186, 461, 475
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	5 cut(s)	36, 115, 124, 293, 419
AluI	AGCT	5 cut(s)	36, 115, 124, 293, 419
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	17, 450
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 273
Bse3DI	GCAATG	2 cut(s)	91, 380
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	17, 450
BseLI	CCNNNNNNNGG	2 cut(s)	270, 273
BseMI	GCAATG	2 cut(s)	91, 380
BseMII	CTCAG	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	358, 369
BslI	CCNNNNNNNGG	2 cut(s)	270, 273
BsmAI	GTCTC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	208
BsrDI	GCAATG	2 cut(s)	91, 380
BssECI	CCNNGG	2 cut(s)	17, 450
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	17, 450
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	2 cut(s)	64, 317
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	450
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	34
CviAII	CATG	2 cut(s)	204, 451
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	64, 317
EarI	CTCTTC	2 cut(s)	64, 317
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	17, 450
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	17, 450
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	17, 450
FaeI	CATG	2 cut(s)	207, 454
FatI	CATG	2 cut(s)	203, 450
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	242
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	2 cut(s)	358, 369
Hin1II	CATG	2 cut(s)	207, 454
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	365, 478
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	358, 369
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	3 cut(s)	198, 232, 475
Hpy8I	GTNNAC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	207, 454
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	423
LpnPI	CCDG	8 cut(s)	46, 132, 371, 382, 382, 396, 405, 409
MaeI	CTAG	1 cut(s)	242
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	5 cut(s)	51, 165, 334, 359, 473
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	388
MlyI	GAGTC	2 cut(s)	374, 487
MnlI	CCTC	6 cut(s)	61, 73, 84, 150, 202, 307
MseI	TTAA	2 cut(s)	165, 354
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	311, 419
MspI	CCGG	2 cut(s)	358, 369
MspR9I	CCNGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	207, 454
PctI	GAATGC	1 cut(s)	241
PleI	GAGTC	2 cut(s)	373, 486
PpsI	GAGTC	2 cut(s)	373, 486
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	165, 354
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	374, 487
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	8 cut(s)	38, 117, 121, 126, 275, 295, 421, 473
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	17, 450
TaaI	ACNGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	231, 345
TasI	AATT	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	165, 354
Tru9I	TTAA	2 cut(s)	165, 354
TscAI	CASTG	1 cut(s)	252
TspDTI	ATGAA	3 cut(s)	122, 146, 348
TspRI	CASTG	1 cut(s)	252
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.