Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016776

Physical Location & Seq

Genomic Coordinates Reverse (-)

1596781 .. 1597665

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1027000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCGTCGTCAGGATCGTGGACGGCAAGGCAAAACAAGCTGTTTGAGAATGCTCTGGCGGTTTACGACAAGGACACACCGGACAGGTGGCACAATCTGGCGAGGGCTGTGGGTGGGAAATCAGTGGAGGAAGTGAAGAGGCACTATCAGATGCTTGTGGAAGATGTGAGCAAGATTGAGGCTGGTGAGGTGCCTTTGCCTAATTATAGAAGATCTGGTGGAGGAAGCACTAAGCCCTATTCCAGGGATATTGATCAAGAAGACAGGATGAAGAGTCTGAGAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

97

Amino Acids

10.92

Weight (kDa)

9.0

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	7.2e-07	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	6 - 53	4.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39750
malus_domestica	MD08G1031200.v1.1 MD15G1027000.v1.1
prunus_persica	Prupe.1G378800_v2.0.a1
pyrus_communis	pycom08g02460 pycom15g02300
rosa_chinensis	RchiOBHm_Chr6g0301111
rosa_roxburghii	Rroxscaffold_172G00445520 Rroxscaffold_7G00167150
rosa_rugosa	Rorug06G0301400
rosa_samantha	Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
AlwI	GGATC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	244
BclI	TGATCA	1 cut(s)	253
BglII	AGATCT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	14, 212, 253
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	14, 212, 253
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	131, 266
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	231, 278
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	3 cut(s)	17, 215, 256
BstMBI	GATC	3 cut(s)	14, 212, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	129
CviJI	RGCY	4 cut(s)	40, 107, 182, 235
CviKI_1	RGCY	4 cut(s)	40, 107, 182, 235
DdeI	CTNAG	2 cut(s)	231, 278
DpnI	GATC	3 cut(s)	16, 214, 255
DpnII	GATC	3 cut(s)	14, 212, 253
Eam1104I	CTCTTC	2 cut(s)	131, 266
EarI	CTCTTC	2 cut(s)	131, 266
EcoNI	CCTNNNNNAGG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	242
FaiI	YATR	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	253
FokI	GGATG	1 cut(s)	280
HapII	CCGG	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	21, 64
Hpy188I	TCNGA	2 cut(s)	150, 279
Hpy188III	TCNNGA	2 cut(s)	12, 257
Hpy8I	GTNNAC	2 cut(s)	21, 64
Hpy99I	CGWCG	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	231, 278
Hsp92I	GRCGYC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	14, 212, 253
LpnPI	CCDG	9 cut(s)	41, 70, 83, 93, 168, 201, 229, 250, 256
LweI	GCATC	1 cut(s)	141
MalI	GATC	3 cut(s)	16, 214, 255
MboI	GATC	3 cut(s)	14, 212, 253
MboII	GAAGA	5 cut(s)	148, 173, 222, 272, 283
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	2 cut(s)	202, 282
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	6 cut(s)	96, 121, 132, 172, 181, 215
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	14, 212, 253
NlaIV	GGNNCC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	14, 212, 253
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	244
SetI	ASST	3 cut(s)	42, 89, 192
SfaNI	GCATC	1 cut(s)	141
Sse9I	AATT	2 cut(s)	202, 282
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	242
TasI	AATT	2 cut(s)	202, 282
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.