Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016776

Physical Location & Seq

Genomic Coordinates Reverse (-)

2224083 .. 2225703

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1031200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGTCGTCAGGATCGTGGACGGCGAGGCAAAACAAGTTGTTTGAGAATGCTCTGGCGGTTTACGACAAGGACACGCCGGAGAGGTGGTACAATCTCGCGAGGGCTGTGGGTGGCAAATCAGTTGAGGAAGTGAAGAGGCACTATCAGATGCTTGTAGAAGATGTGAACAAGATTGAGGCTGGTGAGGTGCCTTTGCCTAATTACAGAAAATCTGGTGGAGGAAACACTAAATCATATTCCATGGATATTGAAGAACAGAGGATGAAGACTCTAAGAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

8.92

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	2.3e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	6 - 53	6.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39750
malus_domestica	MD08G1031200.v1.1 MD15G1027000.v1.1
prunus_persica	Prupe.1G378800_v2.0.a1
pyrus_communis	pycom08g02460 pycom15g02300
rosa_chinensis	RchiOBHm_Chr6g0301111
rosa_roxburghii	Rroxscaffold_172G00445520 Rroxscaffold_7G00167150
rosa_rugosa	Rorug06G0301400
rosa_samantha	Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	254
AlwI	GGATC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	243
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	270
BtuMI	TCGCGA	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	2 cut(s)	107, 182
CviKI_1	RGCY	2 cut(s)	107, 182
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	247
FaiI	YATR	2 cut(s)	238, 245
FatI	CATG	1 cut(s)	243
FokI	GGATG	1 cut(s)	277
HapII	CCGG	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	21, 64, 169
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	12, 100
Hpy8I	GTNNAC	3 cut(s)	21, 64, 169
Hpy99I	CGWCG	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	275
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	41, 93, 168, 201
LweI	GCATC	1 cut(s)	141
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	4 cut(s)	148, 173, 266, 280
MluCI	AATT	2 cut(s)	202, 279
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	9 cut(s)	21, 78, 96, 121, 132, 172, 181, 215, 255
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	55
MvnI	CGCG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	192
NruI	TCGCGA	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 23
PctI	GAATGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	192
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	265
SetI	ASST	2 cut(s)	89, 192
SfaNI	GCATC	1 cut(s)	141
Sse9I	AATT	2 cut(s)	202, 279
SsiI	CCGC	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	243
TasI	AATT	2 cut(s)	202, 279
TspDTI	ATGAA	1 cut(s)	281
XapI	RAATTY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.