Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016776

Physical Location & Seq

Genomic Coordinates Reverse (-)

1807734 .. 1808000

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCGTCGTCGGGATCGTGGACGGCGAGGCAAAACAAGTTGTTTGAGAATGCTCTGGCGGTTTACGACAAGGACACGCCGGAGAGGTGGTACAATCTCGCGAGGGCTGTGGGTGGGAAATCAGTGGAGGAAGTGAAGAGGCACTATCAGATGCTTGTAGAAGATGTGAAGAAGATTGAGGCTGGTGAGGTGCCTTTGCCTAATTACAGAAAATCTGGTGGAGGAAACACTAAATCGTATTCCATGGATATTGAAGAACAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

7.95

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	1.9e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	6 - 54	4.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39750
malus_domestica	MD08G1031200.v1.1 MD15G1027000.v1.1
prunus_persica	Prupe.1G378800_v2.0.a1
pyrus_communis	pycom08g02460 pycom15g02300
rosa_chinensis	RchiOBHm_Chr6g0301111
rosa_roxburghii	Rroxscaffold_172G00445520 Rroxscaffold_7G00167150
rosa_rugosa	Rorug06G0301400
rosa_samantha	Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	254
AlwI	GGATC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
BseDI	CCNNGG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	243
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	129
BtuMI	TCGCGA	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	2 cut(s)	107, 182
CviKI_1	RGCY	2 cut(s)	107, 182
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	247
FaiI	YATR	1 cut(s)	245
FatI	CATG	1 cut(s)	243
HapII	CCGG	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	247
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	21, 64
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	12, 100
Hpy8I	GTNNAC	2 cut(s)	21, 64
Hpy99I	CGWCG	2 cut(s)	10, 13
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	41, 93, 168, 201
LweI	GCATC	1 cut(s)	141
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	5 cut(s)	148, 173, 181, 184, 266
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	9 cut(s)	21, 78, 96, 121, 132, 172, 181, 215, 255
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	55
MvnI	CGCG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	192
NruI	TCGCGA	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 23
PctI	GAATGC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	192
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
Sau3AI	GATC	1 cut(s)	14
SetI	ASST	3 cut(s)	89, 192, 266
SfaNI	GCATC	1 cut(s)	141
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	243
TasI	AATT	1 cut(s)	202
TscAI	CASTG	1 cut(s)	129
TspRI	CASTG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.