Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016776

Physical Location & Seq

Genomic Coordinates Reverse (-)

34223995 .. 34225119

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G378800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCCTCATCGGGATCGTGGACGTCGAGGCAGAACAAGATGTTCGAAAATGCCCTAGCTGTTTACGACAAGGACACGCCGGACCGCTGGCACAATCTGGCGAGGGCTGTGGGTGGGAAATCAGTGGAGGAAGTGAAGAAGCACTATGAGATGCTTGTGGAAGATGTCAACAAGATTGAGGCTGGTGAGGTGCCCTTGCCCAATTATAGAAAACCTGCTGCTGCTGCTGGGAACGGCAAAGCCTACTCTAACTCCATGGATATTGAAGAACAAAGGATGAAGAGTCTAAAGCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

7.95

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39750
malus_domestica	MD08G1031200.v1.1 MD15G1027000.v1.1
prunus_persica	Prupe.1G378800_v2.0.a1
pyrus_communis	pycom08g02460 pycom15g02300
rosa_chinensis	RchiOBHm_Chr6g0301111
rosa_roxburghii	Rroxscaffold_172G00445520 Rroxscaffold_7G00167150
rosa_rugosa	Rorug06G0301400
rosa_samantha	Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	2 cut(s)	59, 292
AluI	AGCT	2 cut(s)	59, 292
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	218, 221, 224
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	205, 208, 211
BceAI	ACGGC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	219, 222, 225
BlsI	GCNGC	3 cut(s)	220, 223, 226
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	205, 208, 211
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	80
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	22
BspT104I	TTCGAA	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	205, 208, 211
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	82
CpoI	CGGWCCG	1 cut(s)	82
CspI	CGGWCCG	1 cut(s)	82
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	5, 59, 107, 182, 242, 292
CviKI_1	RGCY	6 cut(s)	5, 59, 107, 182, 242, 292
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	147, 207, 257
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	219, 222, 225
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	3 cut(s)	219, 222, 225
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	3 cut(s)	219, 222, 225
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	21, 64, 169
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	3 cut(s)	21, 64, 169
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	73, 83, 93, 168, 213, 228
Lsp1109I	GCAGC	3 cut(s)	205, 208, 211
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	4 cut(s)	148, 173, 278, 292
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	6 cut(s)	16, 21, 96, 121, 172, 181
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	220, 223, 226
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	82
Rsr2I	CGGWCCG	1 cut(s)	82
RsrII	CGGWCCG	1 cut(s)	82
SatI	GCNGC	3 cut(s)	219, 222, 225
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	5 cut(s)	26, 61, 192, 217, 294
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	45
SinI	GGWCC	1 cut(s)	82
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	255
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	26, 45
TasI	AATT	1 cut(s)	202
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	3 cut(s)	218, 221, 224
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.