radialis-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g39750 |
| malus_domestica | MD08G1031200.v1.1 MD15G1027000.v1.1 |
| prunus_persica | Prupe.1G378800_v2.0.a1 |
| pyrus_communis | pycom08g02460 pycom15g02300 |
| rosa_chinensis | RchiOBHm_Chr6g0301111 |
| rosa_roxburghii | Rroxscaffold_172G00445520 Rroxscaffold_7G00167150 |
| rosa_rugosa | Rorug06G0301400 |
| rosa_samantha | Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 86 |
| AclWI | GGATC | 1 cut(s) | 196 |
| AfaI | GTAC | 2 cut(s) | 248, 321 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 45 |
| AgsI | TTSAA | 3 cut(s) | 122, 236, 257 |
| AluBI | AGCT | 3 cut(s) | 68, 194, 289 |
| AluI | AGCT | 3 cut(s) | 68, 194, 289 |
| Alw26I | GTCTC | 1 cut(s) | 94 |
| AlwI | GGATC | 1 cut(s) | 196 |
| AsuC2I | CCSGG | 1 cut(s) | 41 |
| BbsI | GAAGAC | 1 cut(s) | 243 |
| BceAI | ACGGC | 1 cut(s) | 139 |
| BciVI | GTATCC | 1 cut(s) | 28 |
| BcnI | CCSGG | 1 cut(s) | 41 |
| BcoDI | GTCTC | 1 cut(s) | 94 |
| BfaI | CTAG | 1 cut(s) | 17 |
| BfuI | GTATCC | 1 cut(s) | 28 |
| Bme1390I | CCNGG | 1 cut(s) | 41 |
| BmrFI | CCNGG | 1 cut(s) | 41 |
| BpiI | GAAGAC | 1 cut(s) | 243 |
| BpuMI | CCSGG | 1 cut(s) | 41 |
| BsaAI | YACGTR | 2 cut(s) | 250, 323 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 225 |
| BsaWI | WCCGGW | 1 cut(s) | 132 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 45 |
| BseDI | CCNNGG | 2 cut(s) | 39, 225 |
| BseGI | GGATG | 1 cut(s) | 314 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 45 |
| BseYI | CCCAGC | 1 cut(s) | 194 |
| BsiSI | CCGG | 3 cut(s) | 41, 133, 144 |
| BsiWI | CGTACG | 1 cut(s) | 319 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 45 |
| BsmAI | GTCTC | 1 cut(s) | 94 |
| BsmI | GAATGC | 1 cut(s) | 16 |
| Bsp143I | GATC | 4 cut(s) | 173, 188, 206, 311 |
| Bsp19I | CCATGG | 1 cut(s) | 225 |
| BspACI | CCGC | 1 cut(s) | 86 |
| BspPI | GGATC | 1 cut(s) | 196 |
| BspQI | GCTCTTC | 1 cut(s) | 279 |
| BssECI | CCNNGG | 2 cut(s) | 39, 225 |
| BssMI | GATC | 4 cut(s) | 173, 188, 206, 311 |
| BssT1I | CCWWGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| Bst6I | CTCTTC | 2 cut(s) | 279, 321 |
| BstBAI | YACGTR | 2 cut(s) | 250, 323 |
| BstDSI | CCRYGG | 1 cut(s) | 225 |
| BstF5I | GGATG | 1 cut(s) | 314 |
| BstKTI | GATC | 4 cut(s) | 176, 191, 209, 314 |
| BstMAI | GTCTC | 1 cut(s) | 94 |
| BstMBI | GATC | 4 cut(s) | 173, 188, 206, 311 |
| BstSCI | CCNGG | 1 cut(s) | 39 |
| BstV2I | GAAGAC | 1 cut(s) | 243 |
| BsuI | GTATCC | 1 cut(s) | 28 |
| BtgI | CCRYGG | 1 cut(s) | 225 |
| BtsCI | GGATG | 1 cut(s) | 314 |
| BtsI | GCAGTG | 1 cut(s) | 27 |
| BtsIMutI | CAGTG | 2 cut(s) | 27, 279 |
| Csp6I | GTAC | 2 cut(s) | 247, 320 |
| CviAII | CATG | 1 cut(s) | 226 |
| CviJI | RGCY | 5 cut(s) | 68, 115, 194, 212, 289 |
| CviKI_1 | RGCY | 5 cut(s) | 68, 115, 194, 212, 289 |
| CviQI | GTAC | 2 cut(s) | 247, 320 |
| DpnI | GATC | 4 cut(s) | 175, 190, 208, 313 |
| DpnII | GATC | 4 cut(s) | 173, 188, 206, 311 |
| Eam1104I | CTCTTC | 2 cut(s) | 279, 321 |
| EarI | CTCTTC | 2 cut(s) | 279, 321 |
| Eco130I | CCWWGG | 1 cut(s) | 225 |
| EcoT14I | CCWWGG | 1 cut(s) | 225 |
| ErhI | CCWWGG | 1 cut(s) | 225 |
| FaeI | CATG | 1 cut(s) | 229 |
| FaiI | YATR | 3 cut(s) | 27, 108, 227 |
| FatI | CATG | 1 cut(s) | 225 |
| FokI | GGATG | 1 cut(s) | 301 |
| FspBI | CTAG | 1 cut(s) | 17 |
| GsaI | CCCAGC | 1 cut(s) | 198 |
| HapII | CCGG | 3 cut(s) | 41, 133, 144 |
| Hin1II | CATG | 1 cut(s) | 229 |
| HincII | GTYRAC | 1 cut(s) | 130 |
| HindII | GTYRAC | 1 cut(s) | 130 |
| HinfI | GANTC | 2 cut(s) | 140, 260 |
| HpaII | CCGG | 3 cut(s) | 41, 133, 144 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 302 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 97, 186, 257 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 302 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4IV | ACGT | 2 cut(s) | 249, 322 |
| HpySE526I | ACGT | 2 cut(s) | 249, 322 |
| Hsp92II | CATG | 1 cut(s) | 229 |
| Kzo9I | GATC | 4 cut(s) | 173, 188, 206, 311 |
| LguI | GCTCTTC | 1 cut(s) | 279 |
| LmnI | GCTCC | 1 cut(s) | 198 |
| LpnPI | CCDG | 8 cut(s) | 44, 54, 146, 157, 171, 180, 184, 318 |
| MaeI | CTAG | 1 cut(s) | 17 |
| MaeII | ACGT | 2 cut(s) | 249, 322 |
| MalI | GATC | 4 cut(s) | 175, 190, 208, 313 |
| MboI | GATC | 4 cut(s) | 173, 188, 206, 311 |
| MboII | GAAGA | 4 cut(s) | 134, 248, 296, 338 |
| MluCI | AATT | 3 cut(s) | 163, 220, 267 |
| MlyI | GAGTC | 2 cut(s) | 149, 269 |
| MnlI | CCTC | 1 cut(s) | 82 |
| MspA1I | CMGCKG | 2 cut(s) | 86, 194 |
| MspI | CCGG | 3 cut(s) | 41, 133, 144 |
| MspR9I | CCNGG | 1 cut(s) | 41 |
| Mva1269I | GAATGC | 1 cut(s) | 16 |
| NciI | CCSGG | 1 cut(s) | 41 |
| NcoI | CCATGG | 1 cut(s) | 225 |
| NdeII | GATC | 4 cut(s) | 173, 188, 206, 311 |
| NlaIII | CATG | 1 cut(s) | 229 |
| PciSI | GCTCTTC | 1 cut(s) | 279 |
| PctI | GAATGC | 1 cut(s) | 16 |
| Pfl23II | CGTACG | 1 cut(s) | 319 |
| PleI | GAGTC | 2 cut(s) | 148, 268 |
| PpsI | GAGTC | 2 cut(s) | 148, 268 |
| Ppu21I | YACGTR | 2 cut(s) | 250, 323 |
| PspFI | CCCAGC | 1 cut(s) | 194 |
| PspLI | CGTACG | 1 cut(s) | 319 |
| PvuII | CAGCTG | 1 cut(s) | 194 |
| RsaI | GTAC | 2 cut(s) | 248, 321 |
| RsaNI | GTAC | 2 cut(s) | 247, 320 |
| SapI | GCTCTTC | 1 cut(s) | 279 |
| Sau3AI | GATC | 4 cut(s) | 173, 188, 206, 311 |
| SchI | GAGTC | 2 cut(s) | 149, 269 |
| ScrFI | CCNGG | 1 cut(s) | 41 |
| SetI | ASST | 7 cut(s) | 50, 70, 196, 248, 252, 291, 325 |
| Sse9I | AATT | 3 cut(s) | 163, 220, 267 |
| SsiI | CCGC | 1 cut(s) | 86 |
| SspMI | CTAG | 1 cut(s) | 17 |
| StyD4I | CCNGG | 1 cut(s) | 39 |
| StyI | CCWWGG | 1 cut(s) | 225 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaiI | ACGT | 2 cut(s) | 252, 325 |
| TaqI | TCGA | 2 cut(s) | 6, 282 |
| TasI | AATT | 3 cut(s) | 163, 220, 267 |
| TscAI | CASTG | 2 cut(s) | 27, 279 |
| TspDTI | ATGAA | 1 cut(s) | 123 |
| TspGWI | ACGGA | 1 cut(s) | 307 |
| TspRI | CASTG | 2 cut(s) | 27, 279 |
| XspI | CTAG | 1 cut(s) | 17 |