Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016776

Physical Location & Seq

Genomic Coordinates Forward (+)

59924308 .. 59925080

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG414700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCTCATCGGGATCGTGGACATCAAGGCAAAACAAAATGTTCGAGAATGCTCTAGCAGTGTATGATAAGGATGCCCCGGATAGGTGGCACAATCTGGCGAGAGCTGTGGGTGGTAAGACAGCGGAGGAAGTCAAGAGACACTATGAAAGGCTTGTTGAAGATGTCAACCGGATTGAGTCCGGCGAAGTGCCATTGCCAAATTACACCAGATCATCAAAATCTGGATCAGCTGGGAGCAACAGATCAGCCTACACTAATTCCATGGACATTGAAGACCAGAGGTTCAAGAGTCTGAAATTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

9.0

Isoelectric Point (pI)

68.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39750
malus_domestica	MD08G1031200.v1.1 MD15G1027000.v1.1
prunus_persica	Prupe.1G378800_v2.0.a1
pyrus_communis	pycom08g02460 pycom15g02300
rosa_chinensis	RchiOBHm_Chr6g0301111
rosa_roxburghii	Rroxscaffold_172G00445520 Rroxscaffold_7G00167150
rosa_rugosa	Rorug06G0301400
rosa_samantha	Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	22, 235
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	161, 275, 289
AluBI	AGCT	2 cut(s)	107, 233
AluI	AGCT	2 cut(s)	107, 233
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	22, 235
AoxI	GGCC	1 cut(s)	3
AsuC2I	CCSGG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	78, 264
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	78, 264
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	80, 172, 183
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	14, 212, 227, 245
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	22, 235
BsrDI	GCAATG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	78, 264
BssMI	GATC	4 cut(s)	14, 212, 227, 245
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	17, 215, 230, 248
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	4 cut(s)	14, 212, 227, 245
BstSCI	CCNGG	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	5 cut(s)	5, 107, 154, 233, 251
CviKI_1	RGCY	5 cut(s)	5, 107, 154, 233, 251
DpnI	GATC	4 cut(s)	16, 214, 229, 247
DpnII	GATC	4 cut(s)	14, 212, 227, 245
Eco130I	CCWWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	66, 147, 266
FatI	CATG	1 cut(s)	264
FokI	GGATG	1 cut(s)	86
FspBI	CTAG	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	80, 172, 183
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	179, 292
HpaII	CCGG	3 cut(s)	80, 172, 183
Hpy166II	GTNNAC	2 cut(s)	21, 169
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	5 cut(s)	12, 46, 136, 225, 289
Hpy8I	GTNNAC	2 cut(s)	21, 169
HpyCH4III	ACNGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	14, 212, 227, 245
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	83, 93, 185, 196, 210, 219, 223, 293
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	56
MalI	GATC	4 cut(s)	16, 214, 229, 247
MboI	GATC	4 cut(s)	14, 212, 227, 245
MboII	GAAGA	2 cut(s)	173, 287
MluCI	AATT	3 cut(s)	202, 259, 299
MlyI	GAGTC	2 cut(s)	188, 301
MnlI	CCTC	3 cut(s)	16, 121, 276
MspA1I	CMGCKG	2 cut(s)	125, 233
MspI	CCGG	3 cut(s)	80, 172, 183
MspR9I	CCNGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	14, 212, 227, 245
NlaIII	CATG	1 cut(s)	268
PctI	GAATGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	187, 300
PpsI	GAGTC	2 cut(s)	187, 300
PspFI	CCCAGC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	233
Sau3AI	GATC	4 cut(s)	14, 212, 227, 245
SchI	GAGTC	2 cut(s)	188, 301
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	4 cut(s)	89, 109, 235, 287
SfaNI	GCATC	1 cut(s)	64
Sse9I	AATT	3 cut(s)	202, 259, 299
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	202, 259, 299
TscAI	CASTG	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	66
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.