FvH4_2g40710

Nucleobase-ascorbate transporter 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28958833 .. 28964074
5242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40710.t5

Sequence Viewer

Length: 1644 bp
ATGGTGGAAACAGGACACAACCATCACCACACTCCGGCACCTCAGACGGCAGCACGACCACCTCTACCCCTTGGAGGGGCAAGGGGTCCCACATGGACTCCAGCCGAGCAACTCCACCAGCTCCAGTATTGCATCCAGTCCAATCCCTCTTGGCTGGAGACATTCATTCTGGCGTTTCAGCACTATATTGTCATGCTTGGATCTATAGTTTTGATTGCCAGTACACTCGTGCCTCGGATGGGTGGGGATCATGGTGATAAAGCCCGTGTGATTCAGACGTTGCTGTTTATGTCAGCTATAAACACCTTGCTTCAAACCTTTATCGGATCAAGGCTTCCAACAGTGATGAATGCCTCATTTGCTTTTATGTTGCCAGTGTCGTCGATCATAAATGATTACTCTGATAGGAATTTTAAAAGTGAACATGAGAGGTTTGAGGTCACGATGAGAACGATTCAAGGATCCCTTATTGTTGCTTCCTTCATCAACATCTTCATTGGCTATAGCAGAGCATGGGGAAGCTGTACAAAACGCTTTAGTCCAATTGTTATCGTGCCAGTGGTGTGTGTGGTTGGTCTTGGTCTTTTCGCAAGGGGCTTTCCACTTCTTGCTAACTGTGTGGAGCTTGGCCTGCCTATGCTGATTCTGCTGGTCATTAGCCAACAGTATCTGAGGCGCGTTCTTCCTAGCGCACATGCCATACTTGAGAGGTTTGCTTTGCTTCTCTGCGTTGGGCTTGTCTGGTCATTTGCTGCTATCCTCACCGAGGCTGGTGCTTATAACAATGTTGGGGAGCAGACTAAACGAAGTTGCCGTACAGATCACTCTTACCTGATAACCTCTGCTCCTTGGATTAGAATCCCATATCCATTTCAGTGGGGTGCACCCATATTTAGAGCAAGCCATGTCTTTGGGATGATGGGAGCAGCAATCGTGACAACTGCAGAGACAACTGGAACATTGTTTGCAGCAGCACGGCTTTCAGGTGCAACCCCGCCTCCAGCACATGTCTTGAGCAGCAGCATTGGGCTACAGGGTATTGGCATGTTGCTTGAAGGAATATTTGGTTCTTGTGTTGGTAATACTGCATCAGTAGAAAATGTTGGCCTGCTTGGATTGACACACATAGGGAGCAGGAGAGTAGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCTATATTTGGGAAGTTTGGTGCTTTCTTTGCATCTATTCCCTTGCCAATCTTCGCTGCCATATACTGTGTTTTATTTGGGATTGTTGCTGCTGTTGGGATCACATTCATGCAGTTTGCAAACAATAATTCCTTGAGAAACATCTATGTTTTGGGGCTTTCCCTGTTTCTTGGGATATCAATACCTCAATATTTTATCACAACAACAACCGCAGATGGTGTCGGACCAGTTAGAACAGATGGTATATGGTTTGATGATTGGTTGAACACAATCTTCTCTTCGAGCCCGACAGTGGCAATCATCGTCGGGACACTGCTTGACAACACGCTTGATGCCAAGCATGCAGTCGATGACAGAGGGCTTGCATGGTGGAAACCCTTCCAGAAGAGGAATGGAGATGCTAGAAATGAAGAATTTTACAGCCTTCCTCTTAGAATACGCGAGTATATGCCCACCAGATTTCTCTGA

Protein Analysis

548

Amino Acids

59.99

Weight (kDa)

9.01

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 53 - 457 7.4e-62 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26510
fragaria_vesca FvH4_2g40710 FvH4_2g40710 FvH4_2g40710
malus_domestica MD08G1041700.v1.1 MD15G1035100.v1.1
prunus_persica Prupe.1G389400_v2.0.a1
pyrus_communis pycom08g03370 pycom15g03230
rosa_chinensis RchiOBHm_Chr6g0299891
rosa_laevigata RLG00000011378
rosa_multiflora Rmu_ssc0000158.1_g000015
rosa_roxburghii Rroxscaffold_7G00168300
rosa_rugosa Rorug06G0293000
rosa_samantha Rh6AG404400 Rh6CG418700
rosa_wichuraiana Rw6G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 2 cut(s) 678, 1617
AciI CCGC 2 cut(s) 995, 1386
AclWI GGATC 6 cut(s) 208, 255, 334, 456, 469, 1283
AcsI RAATTY 2 cut(s) 409, 1589
AfaI GTAC 3 cut(s) 223, 526, 817
AfiI CCNNNNNNNGG 7 cut(s) 34, 74, 75, 76, 239, 766, 1468
AflIII ACRYGT 1 cut(s) 1006
AgsI TTSAA 4 cut(s) 314, 458, 1055, 1441
AjuI GAANNNNNNNTTGG 2 cut(s) 1047, 1079
AluBI AGCT 4 cut(s) 121, 296, 522, 625
AluI AGCT 4 cut(s) 121, 296, 522, 625
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 2 cut(s) 152, 941
Alw44I GTGCAC 1 cut(s) 882
AlwI GGATC 6 cut(s) 208, 255, 334, 456, 469, 1283
AlwNI CAGNNNCTG 1 cut(s) 670
AoxI GGCC 2 cut(s) 628, 1105
ApaLI GTGCAC 1 cut(s) 882
ApeKI GCWGC 9 cut(s) 50, 752, 926, 968, 971, 1017, 1020, 1232, 1265
ApoI RAATTY 2 cut(s) 409, 1589
Asp700I GAANNNNTTC 1 cut(s) 1553
AspLEI GCGC 2 cut(s) 678, 692
AspS9I GGNCC 2 cut(s) 86, 1400
AsuHPI GGTGA 3 cut(s) 17, 266, 754
AvaII GGWCC 2 cut(s) 86, 1400
BaeGI GKGCMC 1 cut(s) 886
BamHI GGATCC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 1463
BarI GAAGNNNNNNTAC 2 cut(s) 799, 831
BauI CACGAG 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 886
BbvI GCAGC 9 cut(s) 62, 739, 938, 980, 983, 1029, 1032, 1219, 1252
BccI CCATC 5 cut(s) 30, 232, 913, 1385, 1409
BceAI ACGGC 3 cut(s) 63, 798, 992
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BcoDI GTCTC 2 cut(s) 152, 941
BfaI CTAG 2 cut(s) 687, 1578
BfmI CTRYAG 4 cut(s) 204, 502, 942, 1031
BisI GCNGC 9 cut(s) 51, 753, 927, 969, 972, 1018, 1021, 1233, 1266
BlsI GCNGC 9 cut(s) 52, 754, 928, 970, 973, 1019, 1022, 1234, 1267
Bme18I GGWCC 2 cut(s) 86, 1400
BmgT120I GGNCC 2 cut(s) 86, 1400
BmiI GGNNCC 4 cut(s) 39, 87, 88, 463
BmsI GCATC 5 cut(s) 141, 1097, 1217, 1498, 1564
BpmI CTGGAG 4 cut(s) 84, 107, 176, 984
BpuEI CTTGAG 3 cut(s) 725, 1033, 1330
BsaBI GATNNNNATC 1 cut(s) 857
BsaJI CCNNGG 4 cut(s) 70, 233, 765, 848
BsaXI ACNNNNNCTCC 6 cut(s) 82, 112, 829, 859, 982, 1012
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 74, 75, 76, 239, 766, 1468
Bse1I ACTGG 7 cut(s) 124, 136, 219, 374, 557, 958, 1403
Bse8I GATNNNNATC 1 cut(s) 857
BseDI CCNNGG 4 cut(s) 70, 233, 765, 848
BseGI GGATG 3 cut(s) 132, 243, 921
BseJI GATNNNNATC 1 cut(s) 857
BseLI CCNNNNNNNGG 7 cut(s) 34, 74, 75, 76, 239, 766, 1468
BseMII CTCAG 2 cut(s) 56, 662
BseNI ACTGG 7 cut(s) 124, 136, 219, 374, 557, 958, 1403
BseSI GKGCMC 1 cut(s) 886
BseXI GCAGC 9 cut(s) 62, 739, 938, 980, 983, 1029, 1032, 1219, 1252
BsgI GTGCAG 1 cut(s) 1166
Bsh1236I CGCG 2 cut(s) 678, 1617
BshFI GGCC 2 cut(s) 630, 1107
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 886
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 72, 1498
BslI CCNNNNNNNGG 7 cut(s) 34, 74, 75, 76, 239, 766, 1468
BsmAI GTCTC 2 cut(s) 152, 941
BsmFI GGGAC 2 cut(s) 72, 1498
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 2 cut(s) 630, 1107
Bsp1286I GDGCHC 2 cut(s) 886, 1463
Bsp1407I TGTACA 1 cut(s) 524
Bsp143I GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
BspACI CCGC 2 cut(s) 995, 1386
BspANI GGCC 2 cut(s) 630, 1107
BspCNI CTCAG 2 cut(s) 55, 663
BspFNI CGCG 2 cut(s) 678, 1617
BspLI GGNNCC 4 cut(s) 39, 87, 88, 463
BspMAI CTGCAG 1 cut(s) 946
BspPI GGATC 6 cut(s) 208, 255, 334, 456, 469, 1283
BspT107I GGYRCC 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 524
BsrI ACTGG 7 cut(s) 124, 136, 219, 374, 557, 958, 1403
BssECI CCNNGG 4 cut(s) 70, 233, 765, 848
BssMI GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 70, 848
Bst2BI CACGAG 1 cut(s) 227
Bst4CI ACNGT 5 cut(s) 343, 617, 666, 1244, 1468
Bst6I CTCTTC 2 cut(s) 1459, 1556
BstAUI TGTACA 1 cut(s) 524
BstC8I GCNNGC 5 cut(s) 632, 901, 1109, 1518, 1539
BstDEI CTNAG 3 cut(s) 42, 671, 1607
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 3 cut(s) 132, 243, 921
BstFNI CGCG 2 cut(s) 678, 1617
BstHHI GCGC 2 cut(s) 678, 692
BstKTI GATC 7 cut(s) 203, 250, 329, 387, 464, 823, 1278
BstMAI GTCTC 2 cut(s) 152, 941
BstMBI GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
BstMWI GCNNNNNNNGC 5 cut(s) 359, 631, 646, 1205, 1517
BstNSI RCATGY 4 cut(s) 698, 1010, 1048, 1520
BstSFI CTRYAG 4 cut(s) 204, 502, 942, 1031
BstSLI GKGCMC 1 cut(s) 886
BstUI CGCG 2 cut(s) 678, 1617
BstV1I GCAGC 9 cut(s) 62, 739, 938, 980, 983, 1029, 1032, 1219, 1252
BstX2I RGATCY 2 cut(s) 200, 461
BstXI CCANNNNNNTGG 2 cut(s) 876, 911
BstYI RGATCY 2 cut(s) 200, 461
BsuRI GGCC 2 cut(s) 630, 1107
BtsCI GGATG 3 cut(s) 132, 243, 921
BtsI GCAGTG 1 cut(s) 1487
BtsIMutI CAGTG 6 cut(s) 348, 381, 564, 881, 1473, 1487
Cac8I GCNNGC 5 cut(s) 632, 901, 1109, 1518, 1539
CaiI CAGNNNCTG 1 cut(s) 670
CfoI GCGC 2 cut(s) 678, 692
Cfr13I GGNCC 2 cut(s) 86, 1400
Csp6I GTAC 3 cut(s) 222, 525, 816
CviQI GTAC 3 cut(s) 222, 525, 816
DdeI CTNAG 3 cut(s) 42, 671, 1607
DpnI GATC 7 cut(s) 202, 249, 328, 386, 463, 822, 1277
DpnII GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
DraI TTTAAA 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 1459, 1556
EarI CTCTTC 2 cut(s) 1459, 1556
Eco130I CCWWGG 2 cut(s) 70, 848
Eco24I GRGCYC 1 cut(s) 1463
Eco32I GATATC 2 cut(s) 1152, 1353
Eco47I GGWCC 2 cut(s) 86, 1400
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 86
EcoRV GATATC 2 cut(s) 1152, 1353
EcoT14I CCWWGG 2 cut(s) 70, 848
EcoT38I GRGCYC 1 cut(s) 1463
ErhI CCWWGG 2 cut(s) 70, 848
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 72, 1498
FauI CCCGC 1 cut(s) 1002
Fnu4HI GCNGC 9 cut(s) 51, 753, 927, 969, 972, 1018, 1021, 1233, 1266
FokI GGATG 3 cut(s) 119, 250, 928
FriOI GRGCYC 1 cut(s) 1463
Fsp4HI GCNGC 9 cut(s) 51, 753, 927, 969, 972, 1018, 1021, 1233, 1266
FspBI CTAG 2 cut(s) 687, 1578
GlaI GCGC 2 cut(s) 677, 691
GluI GCNGC 9 cut(s) 51, 753, 927, 969, 972, 1018, 1021, 1233, 1266
GsuI CTGGAG 4 cut(s) 84, 107, 176, 984
HaeIII GGCC 2 cut(s) 630, 1107
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 678, 692
Hin6I GCGC 2 cut(s) 676, 690
HinP1I GCGC 2 cut(s) 676, 690
HinfI GANTC 5 cut(s) 97, 271, 454, 643, 858
HpaII CCGG 1 cut(s) 35
HphI GGTGA 3 cut(s) 17, 266, 754
Hpy166II GTNNAC 3 cut(s) 224, 422, 884
Hpy188I TCNGA 8 cut(s) 45, 237, 276, 326, 403, 672, 1400, 1643
Hpy188III TCNNGA 5 cut(s) 442, 934, 1012, 1483, 1558
Hpy8I GTNNAC 3 cut(s) 224, 422, 884
Hpy99I CGWCG 2 cut(s) 385, 1484
HpyAV CCTTC 4 cut(s) 490, 1049, 1564, 1610
HpyCH4III ACNGT 5 cut(s) 343, 617, 666, 1244, 1468
HpyCH4IV ACGT 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 5 cut(s) 359, 631, 646, 1205, 1517
HpyF3I CTNAG 3 cut(s) 42, 671, 1607
HpySE526I ACGT 1 cut(s) 278
HspAI GCGC 2 cut(s) 676, 690
KflI GGGWCCC 1 cut(s) 86
Kzo9I GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
LmnI GCTCC 6 cut(s) 126, 622, 793, 850, 923, 1131
Lsp1109I GCAGC 9 cut(s) 62, 739, 938, 980, 983, 1029, 1032, 1219, 1252
LweI GCATC 5 cut(s) 141, 1097, 1217, 1498, 1564
MaeI CTAG 2 cut(s) 687, 1578
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 439, 934
MalI GATC 7 cut(s) 202, 249, 328, 386, 463, 822, 1277
MboI GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
MboII GAAGA 9 cut(s) 484, 674, 1162, 1165, 1219, 1441, 1446, 1573, 1598
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 2 cut(s) 200, 461
MhlI GDGCHC 2 cut(s) 886, 1463
MluCI AATT 4 cut(s) 409, 543, 1303, 1589
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 362, 1378
MroXI GAANNNNTTC 1 cut(s) 1553
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 874, 1283
MspI CCGG 1 cut(s) 35
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 355
MvnI CGCG 2 cut(s) 678, 1617
MwoI GCNNNNNNNGC 5 cut(s) 359, 631, 646, 1205, 1517
NdeII GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
NlaIV GGNNCC 4 cut(s) 39, 87, 88, 463
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 439, 934
NspI RCATGY 4 cut(s) 698, 1010, 1048, 1520
PaeI GCATGC 1 cut(s) 1520
PciI ACATGT 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 449, 811
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 1553
PfeI GAWTC 4 cut(s) 271, 454, 643, 858
PkrI GCNGC 9 cut(s) 52, 754, 928, 970, 973, 1019, 1022, 1234, 1267
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 1 cut(s) 1006
PsiI TTATAA 1 cut(s) 780
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 4 cut(s) 39, 87, 88, 463
PspPI GGNCC 2 cut(s) 86, 1400
PspPPI RGGWCCY 1 cut(s) 86
PstI CTGCAG 1 cut(s) 946
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 200, 461
RsaI GTAC 3 cut(s) 223, 526, 817
RsaNI GTAC 3 cut(s) 222, 525, 816
RseI CAYNNNNRTG 2 cut(s) 874, 1283
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 9 cut(s) 51, 753, 927, 969, 972, 1018, 1021, 1233, 1266
Sau3AI GATC 7 cut(s) 200, 247, 326, 384, 461, 820, 1275
Sau96I GGNCC 2 cut(s) 86, 1400
SchI GAGTC 1 cut(s) 91
SduI GDGCHC 2 cut(s) 886, 1463
SfaNI GCATC 5 cut(s) 141, 1097, 1217, 1498, 1564
SfcI CTRYAG 4 cut(s) 204, 502, 942, 1031
SinI GGWCC 2 cut(s) 86, 1400
SmiMI CAYNNNNRTG 2 cut(s) 874, 1283
SmlI CTYRAG 3 cut(s) 704, 1012, 1309
SmoI CTYRAG 3 cut(s) 704, 1012, 1309
SphI GCATGC 1 cut(s) 1520
Sse9I AATT 4 cut(s) 409, 543, 1303, 1589
SsiI CCGC 2 cut(s) 995, 1386
SspI AATATT 2 cut(s) 1062, 1367
SspMI CTAG 2 cut(s) 687, 1578
StyI CCWWGG 2 cut(s) 70, 848
TaaI ACNGT 5 cut(s) 343, 617, 666, 1244, 1468
TaiI ACGT 1 cut(s) 281
TaqI TCGA 3 cut(s) 383, 1457, 1524
TasI AATT 4 cut(s) 409, 543, 1303, 1589
TatI WGTACW 2 cut(s) 221, 524
TfiI GAWTC 4 cut(s) 271, 454, 643, 858
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 6 cut(s) 348, 381, 564, 881, 1473, 1494
TseFI GTSAC 2 cut(s) 439, 934
TseI GCWGC 9 cut(s) 50, 752, 926, 968, 971, 1017, 1020, 1232, 1265
Tsp45I GTSAC 2 cut(s) 439, 934
TspDTI ATGAA 7 cut(s) 154, 362, 472, 484, 1153, 1273, 1599
TspRI CASTG 6 cut(s) 348, 381, 564, 881, 1473, 1494
VneI GTGCAC 1 cut(s) 882
VpaK11BI GGWCC 2 cut(s) 86, 1400
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 2 cut(s) 409, 1589
XceI RCATGY 4 cut(s) 698, 1010, 1048, 1520
XcmI CCANNNNNNNNNTGG 1 cut(s) 1565
XmnI GAANNNNTTC 1 cut(s) 1553
XspI CTAG 2 cut(s) 687, 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.