pycom08g03370

Nucleobase-ascorbate transporter 3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
2617429 .. 2621248
3820 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03370.1

Sequence Viewer

Length: 1647 bp
ATGGGAGAAAATGCTCCGCCTCCTCCACCACAGGTGGTTGCTCGGCCGTCTCAGATGCCTCTTGGGGCGGCGAAGGGTCCTATTTGGACTCCAACTGAGCAGCTCCACCACCTTCAGTATTGCATCCACTCCAACCCCTCTTGGCCGGAAACATTCGTACTTGCTTTCCAGCACTATATTGTGATGCTCGGATCCATAGTTATAATTGCCACTAGTCTCGTGCCTCGGATGGGTGGGGATCATGGTGACAAGGCACGCGTGATTCAGACGATGCTGTTTATGGCAGCAATAAACACGTTGATCCAAACACTCATCGGGACAAGGCTTCCAACAGTGATGACTTCGTCATTCGCTTTCACCATTCCGGTGATGTCAATCATCAATGATTATTCTGATCGGAATTTTAGAAGTGAACATGAGAGGTTTGAGACCACAATGAGAACGATTCAAGGGTCACTTATTGTAGCTTCCTTCTTCAACATCTTCATCGGGTTTAGTAGGGCATGGGGGAACTTCACAAGATTTTTTGGTCCAATCGTTATCGTGCCAGTGGTTTGTGTAGTCGGTCTTGGTCTTTTTGCACGGGGCTTTCCACTTCTCGCAAACTGTGTGGAGATTGGTCTGCCTATGCTGATCCTGCTCGTCATTACTCAACAGTATCTGAGGCATGCTCTTCCTAGAGCCCATAACATACTCGAGAGGTTTGCTTTGCTTCTCTGCATTGGGCTTGCATGGTCATTTGCTGCTATCCTCACCGAGGCTGGTGCTTATAACAATGCTAAACAGCAGACTAAACAAAATTGCCGTACAGATCGCTCTTACCTTATAGCATCTGCTCCTTGGATTAGATTCCCATACCCGTTTCAGTGGGGTAAACCCATATTCCGAGCGAGCCACGTCTTTGGAATGATGGGAGCAGCAATTGTTACGTCTGCAGAGTCAACTGGAGCGTATTTTGCGGCAGCACGGCTTTCAGGTGCTACTCCCCCTCCAGCAAGTGTAGTGAGCCAGAGTATTGGCTTGCAGGGTGCTGGCATGCTGCTTGAAGGTATTTTTGGCGCTGCTGTCGGTACCACAGCATCCGTTGAAAACGTTGGCCTGCTTGGATTGACACACATAGGGAGCAGGAGAGCGGTGCAGATTTCAACTGCTTTCATGTTCTTCTTCGCTATATTTGGGAAGTTTGGAGCTTTTTTTGCATCAATTCCTTTGCCGATATTTGCTGCCATGTACTGTGTTTTATTTGGAATCGTCGCTGCTGTTGGTCTCACATTCATGCAGTTTGCAAATAATAATTCCTTGAGAAACATCTATGTTTTGGGTCTTTCCCTGTTTCTTGGGATCTCGATACCTCAATATTTTGTCTCGAACACCACCCCGAATGGTATCGGGCCAGTCAAAACGGATGGCGTATGGTTTGATGACATACTGAACACGATCGTTCTCATCGAGCCCAACAGTGGCGATCGATCGTGGGCACGCTGCTGGATAACACGCTTGACGCCAAGCATTCGGCCAGCGACAGAGGACTTGCATGGTGGAGACCATTCCAGAGCAGGAAAGGAGATGCTAGAAATGAGGAGTTTTATAGTCTACCTGTTAGGATACGGGAGTACATACCTTCCAGATTTTTCTATTATTAGATAA

Protein Analysis

549

Amino Acids

59.98

Weight (kDa)

9.27

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 50 - 454 8.6e-62 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26510
fragaria_vesca FvH4_2g40710 FvH4_2g40710 FvH4_2g40710
malus_domestica MD08G1041700.v1.1 MD15G1035100.v1.1
prunus_persica Prupe.1G389400_v2.0.a1
pyrus_communis pycom08g03370 pycom15g03230
rosa_chinensis RchiOBHm_Chr6g0299891
rosa_laevigata RLG00000011378
rosa_multiflora Rmu_ssc0000158.1_g000015
rosa_roxburghii Rroxscaffold_7G00168300
rosa_rugosa Rorug06G0293000
rosa_samantha Rh6AG404400 Rh6CG418700
rosa_wichuraiana Rw6G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 203, 771
Acc65I GGTACC 1 cut(s) 1070
AccB1I GGYRCC 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 1133
AccI GTMKAC 1 cut(s) 1593
AccII CGCG 1 cut(s) 258
AciI CCGC 4 cut(s) 17, 68, 959, 1133
AclI AACGTT 1 cut(s) 1092
AclWI GGATC 6 cut(s) 186, 199, 246, 295, 628, 1349
AcoI YGGCCR 3 cut(s) 44, 143, 1514
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 1502
AfaI GTAC 5 cut(s) 159, 808, 1072, 1232, 1615
AfiI CCNNNNNNNGG 3 cut(s) 230, 757, 1460
AflIII ACRYGT 2 cut(s) 256, 294
AgsI TTSAA 5 cut(s) 449, 478, 1046, 1088, 1146
AhlI ACTAGT 1 cut(s) 212
AjiI CACGTC 1 cut(s) 898
AjuI GAANNNNNNNTTGG 2 cut(s) 1038, 1070
AluBI AGCT 3 cut(s) 103, 467, 1190
AluI AGCT 3 cut(s) 103, 467, 1190
Alw26I GTCTC 6 cut(s) 54, 221, 422, 1271, 1369, 1536
AlwI GGATC 6 cut(s) 186, 199, 246, 295, 628, 1349
AlwNI CAGNNNCTG 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 5 cut(s) 44, 143, 1096, 1391, 1514
ApoI RAATTY 1 cut(s) 400
Asp718I GGTACC 1 cut(s) 1070
AspLEI GCGC 1 cut(s) 1061
AspS9I GGNCC 3 cut(s) 77, 530, 1391
AsuHPI GGTGA 4 cut(s) 257, 349, 379, 745
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 2 cut(s) 77, 530
BaeGI GKGCMC 1 cut(s) 1480
BaeI ACNNNNGTAYC 2 cut(s) 1597, 1630
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 1070
BanII GRGCYC 2 cut(s) 685, 1455
BauI CACGAG 1 cut(s) 218
BccI CCATC 3 cut(s) 223, 904, 1400
BceAI ACGGC 3 cut(s) 31, 789, 983
BcgI CGANNNNNNTGC 4 cut(s) 686, 720, 746, 780
BciVI GTATCC 1 cut(s) 1598
BcoDI GTCTC 6 cut(s) 54, 221, 422, 1271, 1369, 1536
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 3 cut(s) 213, 678, 1571
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 1 cut(s) 1062
BfuI GTATCC 1 cut(s) 1598
Bme18I GGWCC 2 cut(s) 77, 530
BmeT110I CYCGRG 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 898
BmgT120I GGNCC 3 cut(s) 77, 530, 1391
BmiI GGNNCC 3 cut(s) 78, 193, 1072
BmsI GCATC 8 cut(s) 45, 132, 174, 261, 839, 1088, 1208, 1557
BplI GAGNNNNNCTC 2 cut(s) 655, 687
BpmI CTGGAG 2 cut(s) 966, 975
BpuEI CTTGAG 1 cut(s) 1321
Bsa29I ATCGAT 1 cut(s) 1468
BsaBI GATNNNNATC 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 1502
BsaI GGTCTC 3 cut(s) 422, 1271, 1536
BsaJI CCNNGG 3 cut(s) 224, 756, 839
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 973, 1003
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 757, 1460
Bse1I ACTGG 3 cut(s) 548, 949, 1394
Bse8I GATNNNNATC 1 cut(s) 374
BseCI ATCGAT 1 cut(s) 1468
BseDI CCNNGG 3 cut(s) 224, 756, 839
BseGI GGATG 4 cut(s) 123, 234, 1079, 1411
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 3 cut(s) 230, 757, 1460
BseMII CTCAG 3 cut(s) 65, 87, 653
BseNI ACTGG 3 cut(s) 548, 949, 1394
BseRI GAGGAG 2 cut(s) 12, 1594
BseSI GKGCMC 1 cut(s) 1480
BseX3I CGGCCG 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 1157
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 4 cut(s) 47, 1440, 1468, 1472
BshFI GGCC 5 cut(s) 46, 145, 1098, 1393, 1516
BshNI GGYRCC 1 cut(s) 1070
BshVI ATCGAT 1 cut(s) 1468
BsiEI CGRYCG 4 cut(s) 47, 1440, 1468, 1472
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 2 cut(s) 146, 365
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 230, 757, 1460
BsmAI GTCTC 6 cut(s) 54, 221, 422, 1271, 1369, 1536
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 1509
BsnI GGCC 5 cut(s) 46, 145, 1098, 1393, 1516
Bso31I GGTCTC 3 cut(s) 422, 1271, 1536
BsoBI CYCGRG 1 cut(s) 695
Bsp1286I GDGCHC 3 cut(s) 685, 1455, 1480
BspACI CCGC 4 cut(s) 17, 68, 959, 1133
BspANI GGCC 5 cut(s) 46, 145, 1098, 1393, 1516
BspCNI CTCAG 3 cut(s) 64, 88, 654
BspDI ATCGAT 1 cut(s) 1468
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 78, 193, 1072
BspMAI CTGCAG 1 cut(s) 937
BspPI GGATC 6 cut(s) 186, 199, 246, 295, 628, 1349
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 1070
BspTNI GGTCTC 3 cut(s) 422, 1271, 1536
BsrBI CCGCTC 1 cut(s) 1133
BsrI ACTGG 3 cut(s) 548, 949, 1394
BssECI CCNNGG 3 cut(s) 224, 756, 839
BssNI GRCGYC 1 cut(s) 1502
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 839
Bst2BI CACGAG 1 cut(s) 218
Bst4CI ACNGT 5 cut(s) 334, 608, 657, 1235, 1460
Bst6I CTCTTC 1 cut(s) 678
BstACI GRCGYC 1 cut(s) 1502
BstDEI CTNAG 3 cut(s) 51, 96, 662
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 4 cut(s) 123, 234, 1079, 1411
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 1062
BstHHI GCGC 1 cut(s) 1061
BstMAI GTCTC 6 cut(s) 54, 221, 422, 1271, 1369, 1536
BstMCI CGRYCG 4 cut(s) 47, 1440, 1468, 1472
BstMWI GCNNNNNNNGC 3 cut(s) 637, 956, 1196
BstNSI RCATGY 2 cut(s) 671, 1039
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 1480
BstUI CGCG 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 191, 1341
BstXI CCANNNNNNTGG 2 cut(s) 902, 1016
BstYI RGATCY 2 cut(s) 191, 1341
BstZI CGGCCG 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 1468
BsuI GTATCC 1 cut(s) 1598
BsuRI GGCC 5 cut(s) 46, 145, 1098, 1393, 1516
BsuTUI ATCGAT 1 cut(s) 1468
BtrI CACGTC 1 cut(s) 898
BtsCI GGATG 4 cut(s) 123, 234, 1079, 1411
BtsIMutI CAGTG 4 cut(s) 339, 555, 872, 1465
CaiI CAGNNNCTG 1 cut(s) 661
CfoI GCGC 1 cut(s) 1061
Cfr13I GGNCC 3 cut(s) 77, 530, 1391
ClaI ATCGAT 1 cut(s) 1468
CseI GACGC 1 cut(s) 1510
Csp6I GTAC 5 cut(s) 158, 807, 1071, 1231, 1614
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviQI GTAC 5 cut(s) 158, 807, 1071, 1231, 1614
DdeI CTNAG 3 cut(s) 51, 96, 662
EaeI YGGCCR 3 cut(s) 44, 143, 1514
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
EciI GGCGGA 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 839
Eco24I GRGCYC 2 cut(s) 685, 1455
Eco31I GGTCTC 3 cut(s) 422, 1271, 1536
Eco47I GGWCC 2 cut(s) 77, 530
Eco52I CGGCCG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 695
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 839
EcoT38I GRGCYC 2 cut(s) 685, 1455
ErhI CCWWGG 1 cut(s) 839
Esp3I CGTCTC 1 cut(s) 54
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 1 cut(s) 331
FblI GTMKAC 1 cut(s) 1593
FokI GGATG 4 cut(s) 110, 241, 1066, 1418
FriOI GRGCYC 2 cut(s) 685, 1455
FspBI CTAG 3 cut(s) 213, 678, 1571
GlaI GCGC 1 cut(s) 1060
GsuI CTGGAG 2 cut(s) 966, 975
HaeII RGCGCY 1 cut(s) 1062
HaeIII GGCC 5 cut(s) 46, 145, 1098, 1393, 1516
HapII CCGG 2 cut(s) 146, 365
HgaI GACGC 1 cut(s) 1510
HhaI GCGC 1 cut(s) 1061
Hin1I GRCGYC 1 cut(s) 1502
Hin6I GCGC 1 cut(s) 1059
HinP1I GCGC 1 cut(s) 1059
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HinfI GANTC 6 cut(s) 88, 262, 445, 849, 938, 1248
HpaII CCGG 2 cut(s) 146, 365
HphI GGTGA 4 cut(s) 257, 349, 379, 745
Hpy166II GTNNAC 4 cut(s) 413, 875, 942, 1594
Hpy188I TCNGA 8 cut(s) 54, 191, 228, 267, 394, 399, 663, 887
Hpy188III TCNNGA 6 cut(s) 316, 697, 1345, 1366, 1551, 1625
Hpy8I GTNNAC 4 cut(s) 413, 875, 942, 1594
Hpy99I CGWCG 1 cut(s) 1256
HpyAV CCTTC 5 cut(s) 67, 122, 481, 1040, 1631
HpyCH4III ACNGT 5 cut(s) 334, 608, 657, 1235, 1460
HpyCH4IV ACGT 4 cut(s) 296, 897, 929, 1092
HpyF10VI GCNNNNNNNGC 3 cut(s) 637, 956, 1196
HpyF3I CTNAG 3 cut(s) 51, 96, 662
HpySE526I ACGT 4 cut(s) 296, 897, 929, 1092
Hsp92I GRCGYC 1 cut(s) 1502
HspAI GCGC 1 cut(s) 1059
KpnI GGTACC 1 cut(s) 1074
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 7 cut(s) 19, 108, 841, 914, 947, 1122, 1187
LweI GCATC 8 cut(s) 45, 132, 174, 261, 839, 1088, 1208, 1557
MaeI CTAG 3 cut(s) 213, 678, 1571
MaeII ACGT 4 cut(s) 296, 897, 929, 1092
MaeIII GTNAC 3 cut(s) 245, 453, 925
MbiI CCGCTC 1 cut(s) 1133
MboII GAAGA 5 cut(s) 466, 475, 665, 1153, 1156
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 2 cut(s) 191, 1341
MhlI GDGCHC 3 cut(s) 685, 1455, 1480
MluCI AATT 6 cut(s) 204, 400, 799, 921, 1203, 1294
MluI ACGCGT 1 cut(s) 256
MlyI GAGTC 2 cut(s) 82, 947
MmeI TCCRAC 3 cut(s) 116, 156, 353
MslI CAYNNNNRTG 2 cut(s) 365, 1274
MspI CCGG 2 cut(s) 146, 365
MunI CAATTG 1 cut(s) 921
Mva1269I GAATGC 1 cut(s) 1509
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 637, 956, 1196
NlaIV GGNNCC 3 cut(s) 78, 193, 1072
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 2 cut(s) 245, 453
NspI RCATGY 2 cut(s) 671, 1039
PaeI GCATGC 2 cut(s) 671, 1039
PaeR7I CTCGAG 1 cut(s) 695
PciSI GCTCTTC 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 1446
PctI GAATGC 1 cut(s) 1509
PfeI GAWTC 4 cut(s) 262, 445, 849, 1248
PflFI GACNNNGTC 1 cut(s) 343
Ple19I CGATCG 3 cut(s) 1440, 1468, 1472
PleI GAGTC 2 cut(s) 82, 946
PpsI GAGTC 2 cut(s) 82, 946
PpuMI RGGWCCY 1 cut(s) 77
PsiI TTATAA 2 cut(s) 203, 771
Psp1406I AACGTT 1 cut(s) 1092
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 78, 193, 1072
PspPI GGNCC 3 cut(s) 77, 530, 1391
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 661
PsuI RGATCY 2 cut(s) 191, 1341
PsyI GACNNNGTC 1 cut(s) 343
PvuI CGATCG 3 cut(s) 1440, 1468, 1472
RsaI GTAC 5 cut(s) 159, 808, 1072, 1232, 1615
RsaNI GTAC 5 cut(s) 158, 807, 1071, 1231, 1614
RseI CAYNNNNRTG 2 cut(s) 365, 1274
SapI GCTCTTC 1 cut(s) 678
Sau96I GGNCC 3 cut(s) 77, 530, 1391
SchI GAGTC 2 cut(s) 82, 947
SduI GDGCHC 3 cut(s) 685, 1455, 1480
SfaNI GCATC 8 cut(s) 45, 132, 174, 261, 839, 1088, 1208, 1557
SfcI CTRYAG 1 cut(s) 933
Sfr274I CTCGAG 1 cut(s) 695
SinI GGWCC 2 cut(s) 77, 530
SlaI CTCGAG 1 cut(s) 695
SmiMI CAYNNNNRTG 2 cut(s) 365, 1274
SmlI CTYRAG 2 cut(s) 695, 1300
SmoI CTYRAG 2 cut(s) 695, 1300
SpeI ACTAGT 1 cut(s) 212
SphI GCATGC 2 cut(s) 671, 1039
Sse9I AATT 6 cut(s) 204, 400, 799, 921, 1203, 1294
SsiI CCGC 4 cut(s) 17, 68, 959, 1133
SspI AATATT 1 cut(s) 1358
SspMI CTAG 3 cut(s) 213, 678, 1571
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 5 cut(s) 334, 608, 657, 1235, 1460
TaiI ACGT 4 cut(s) 299, 900, 932, 1095
TaqI TCGA 5 cut(s) 696, 1346, 1367, 1449, 1468
TaqII GACCGA 1 cut(s) 554
TasI AATT 6 cut(s) 204, 400, 799, 921, 1203, 1294
TatI WGTACW 2 cut(s) 1230, 1613
TauI GCSGC 2 cut(s) 71, 962
TfiI GAWTC 4 cut(s) 262, 445, 849, 1248
TscAI CASTG 4 cut(s) 339, 555, 872, 1465
TseFI GTSAC 2 cut(s) 245, 453
Tsp45I GTSAC 2 cut(s) 245, 453
TspDTI ATGAA 3 cut(s) 475, 1144, 1264
TspGWI ACGGA 2 cut(s) 1072, 1418
TspRI CASTG 4 cut(s) 339, 555, 872, 1465
Tth111I GACNNNGTC 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 77, 530
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 1 cut(s) 400
XceI RCATGY 2 cut(s) 671, 1039
XhoI CTCGAG 1 cut(s) 695
XmiI GTMKAC 1 cut(s) 1593
XspI CTAG 3 cut(s) 213, 678, 1571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.