Rw6G035370

Nucleobase-ascorbate transporter 3-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
59921529 .. 59925273
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035370.1

Sequence Viewer

Length: 1653 bp
ATGGTGGAAACAGGGCACAGCCACAACCACAACCACAACCACAATCCGCCACCTCCGACTGCTCCACCGCCTGCTCGTCTACCGCTTGGAGCGGCAAGGGGCCCGTTATGGACTCCAACAGAGCAACTCCACCAGCTTCAGTATTGCATCCATTCCAATCCCTCTTGGCACATTCTACTGGCTTTTCAGCACTATATTGTCATGCTTGGATCTGTAGTTTTGATTGCCAGTACACTTGTGCCTCGGATGGGTGGGGATCATGGTGATAAAGCCCGCGTTATTCAGACGTTGCTTTTCATGTCAGCAATAAACACCTTGCTTCAAACGTTTTTTGGATCAAGGCTTCCAACAGTGATGAATCCCTCATTTGCTTATATGCTGCCGGTGTCGTCGATCATTAATGATTACTCTAATAGGACTTTTAAAAGTGAACATGAGAGATTTGAGGTCACAATGAGAACGATTCAAGGATCCCTTATTGTATCTTCCTTCGTCAACATCTTCATTGGCTATAGTAGAGCATGGGGAAGCTGTACAAAGCGCTTTAGTCCCATTGTTATCGTGCCAGTGGTTTGTGTGGTTGGTCTTGGTCTTTTCGCGAGGGGCTTCCCACTTCTTGCTAATTGTGTGGAGCTTGGCCTGCCTATGCTGATACTGCTGGTCATTACCCAACAGTATCTGAGGCGCATTATTCCTAGAGCACATTTCATGCTTGAGAGGTATGCTTTGCTTCTCTGCGTTGGGATTGTCTGGTCATTTGCTGCTATCCTCACCGAGGCTGGTACTTATAACAATGTTGGAGAGCAGACTAAACAAAGTTGCCGTACAGATCACTCTTACCTTATAACCTCTGCTCCTTGGATTAGAATCTCATATCCATTTCAGTGGGGTGCACCCATATTCAGAGCAAGCCATGTCTTTGGGATGATGGGAGCAGCAATTGTCACAACTGCAGAGACAACTGGAACATTGTTTGCAGCAGCACGGCTTTCAGGTGCTACCCCCCCTCCAGCACATGTCTTGAGCAGCAGCATTGGCCTACAGGGTATTGGCATGCTGCTTGAAGGAATATTTGGTGCTGCTGTTGGTACCACTGCATCAGTAGAAAATGTGGGCCTGCTTGGATTGACACACATAGGGAGCAGGAGAGTAGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCTATATTTGGGAAGTTTGGTGCTTTCTTTGCATCTATTCCCTTACCAATCTTCGCCGCTATATACTGTGTTTTATTTGGGATTGTTGCTGCTGTTGGGATCACTTTCATGCAGTTTGTGAATAATAATTCCTTAAGAAACATGTACGTTGTGGGGCTTTCCCTGTTTCTTGGGATATCAATACCTCAATATTTTATCACGACCACAACTGCAGATGGTGTCGGACCAGTTAGAACAGATGGTATATGGTTTGACGATTGGTTGAACACTATCTTCTCTTCGAGCCCGACAGTGGCAATCATCGTCGGGACGCTGCTTGACAACACGCTCGACGCCAAGTCTGCAGTCGATGACAGAGGGCTTGGATGGTGGAAGCCCTTCCAGCACAGGAATGGAGATGTTAGAAATGAAGAATTTTATAGCCTTCCTCTTAGAATACGCGAGTATCTCCCCAGTAGATTTCTCTGA

Protein Analysis

550

Amino Acids

60.54

Weight (kDa)

9.17

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 58 - 460 2.3e-62 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26510
fragaria_vesca FvH4_2g40710 FvH4_2g40710 FvH4_2g40710
malus_domestica MD08G1041700.v1.1 MD15G1035100.v1.1
prunus_persica Prupe.1G389400_v2.0.a1
pyrus_communis pycom08g03370 pycom15g03230
rosa_chinensis RchiOBHm_Chr6g0299891
rosa_laevigata RLG00000011378
rosa_multiflora Rmu_ssc0000158.1_g000015
rosa_roxburghii Rroxscaffold_7G00168300
rosa_rugosa Rorug06G0293000
rosa_samantha Rh6AG404400 Rh6CG418700
rosa_wichuraiana Rw6G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 789, 845
Acc65I GGTACC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1088
AccBSI CCGCTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 79
AccII CGCG 3 cut(s) 276, 599, 1626
AciI CCGC 6 cut(s) 47, 68, 83, 92, 274, 1242
AclI AACGTT 1 cut(s) 326
AclWI GGATC 6 cut(s) 217, 264, 343, 465, 478, 1292
AcsI RAATTY 1 cut(s) 1598
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 1518
AfaI GTAC 6 cut(s) 232, 535, 784, 826, 1090, 1331
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 248, 775, 1477
AflII CTTAAG 1 cut(s) 1318
AflIII ACRYGT 2 cut(s) 1015, 1326
AgsI TTSAA 4 cut(s) 323, 467, 1064, 1450
AhdI GACNNNNNGTC 1 cut(s) 1522
AjuI GAANNNNNNNTTGG 2 cut(s) 1056, 1088
AluBI AGCT 3 cut(s) 136, 531, 634
AluI AGCT 3 cut(s) 136, 531, 634
Alw21I GWGCWC 2 cut(s) 703, 895
Alw26I GTCTC 1 cut(s) 950
Alw44I GTGCAC 1 cut(s) 891
AlwI GGATC 6 cut(s) 217, 264, 343, 465, 478, 1292
AlwNI CAGNNNCTG 1 cut(s) 679
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 4 cut(s) 100, 637, 1036, 1114
ApaI GGGCCC 1 cut(s) 104
ApaLI GTGCAC 1 cut(s) 891
ApoI RAATTY 1 cut(s) 1598
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 1562
Asp718I GGTACC 1 cut(s) 1088
AspLEI GCGC 2 cut(s) 543, 687
AspS9I GGNCC 4 cut(s) 100, 101, 1114, 1409
AsuHPI GGTGA 2 cut(s) 275, 763
AvaII GGWCC 1 cut(s) 1409
BaeGI GKGCMC 3 cut(s) 18, 104, 895
BaeI ACNNNNGTAYC 2 cut(s) 1613, 1646
BamHI GGATCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 2 cut(s) 104, 1472
Bbv12I GWGCWC 2 cut(s) 703, 895
BccI CCATC 5 cut(s) 241, 922, 1394, 1418, 1545
BceAI ACGGC 2 cut(s) 807, 1001
BcoDI GTCTC 1 cut(s) 950
BfaI CTAG 1 cut(s) 696
BfmI CTRYAG 6 cut(s) 213, 511, 951, 1040, 1395, 1527
BfoI RGCGCY 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 1318
Bme18I GGWCC 1 cut(s) 1409
BmeRI GACNNNNNGTC 1 cut(s) 1522
BmgT120I GGNCC 4 cut(s) 100, 101, 1114, 1409
BmiI GGNNCC 4 cut(s) 101, 102, 472, 1090
BmrI ACTGGG 1 cut(s) 1632
BmsI GCATC 3 cut(s) 156, 1106, 1226
BmuI ACTGGG 1 cut(s) 1632
BpmI CTGGAG 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 734, 1042
BsaBI GATNNNNATC 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 1518
BsaJI CCNNGG 3 cut(s) 242, 774, 857
BsaXI ACNNNNNCTCC 4 cut(s) 838, 868, 991, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 775, 1477
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 6 cut(s) 183, 228, 566, 967, 1412, 1638
Bse8I GATNNNNATC 1 cut(s) 866
BseDI CCNNGG 3 cut(s) 242, 774, 857
BseGI GGATG 4 cut(s) 147, 252, 930, 1556
BseJI GATNNNNATC 1 cut(s) 866
BseLI CCNNNNNNNGG 3 cut(s) 248, 775, 1477
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 6 cut(s) 183, 228, 566, 967, 1412, 1638
BseSI GKGCMC 3 cut(s) 18, 104, 895
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 3 cut(s) 276, 599, 1626
BshFI GGCC 4 cut(s) 102, 639, 1038, 1116
BshNI GGYRCC 1 cut(s) 1088
BsiHKAI GWGCWC 2 cut(s) 703, 895
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 534, 1507
BslI CCNNNNNNNGG 3 cut(s) 248, 775, 1477
BsmAI GTCTC 1 cut(s) 950
BsmFI GGGAC 2 cut(s) 534, 1507
BsnI GGCC 4 cut(s) 102, 639, 1038, 1116
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 5 cut(s) 18, 104, 703, 895, 1472
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
Bsp68I TCGCGA 1 cut(s) 599
BspACI CCGC 6 cut(s) 47, 68, 83, 92, 274, 1242
BspANI GGCC 4 cut(s) 102, 639, 1038, 1116
BspCNI CTCAG 1 cut(s) 672
BspFNI CGCG 3 cut(s) 276, 599, 1626
BspLI GGNNCC 4 cut(s) 101, 102, 472, 1090
BspMAI CTGCAG 3 cut(s) 955, 1399, 1531
BspPI GGATC 6 cut(s) 217, 264, 343, 465, 478, 1292
BspT107I GGYRCC 1 cut(s) 1088
BspTI CTTAAG 1 cut(s) 1318
BsrBI CCGCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 6 cut(s) 183, 228, 566, 967, 1412, 1638
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 242, 774, 857
BssMI GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
BssNI GRCGYC 1 cut(s) 1518
BssT1I CCWWGG 1 cut(s) 857
Bst4CI ACNGT 4 cut(s) 352, 675, 1253, 1477
Bst6I CTCTTC 1 cut(s) 1468
BstACI GRCGYC 1 cut(s) 1518
BstAFI CTTAAG 1 cut(s) 1318
BstAUI TGTACA 1 cut(s) 533
BstC8I GCNNGC 6 cut(s) 72, 274, 641, 910, 1055, 1118
BstDEI CTNAG 2 cut(s) 680, 1616
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 4 cut(s) 147, 252, 930, 1556
BstFNI CGCG 3 cut(s) 276, 599, 1626
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 2 cut(s) 543, 687
BstKTI GATC 7 cut(s) 212, 259, 338, 396, 473, 832, 1287
BstMAI GTCTC 1 cut(s) 950
BstMBI GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
BstMWI GCNNNNNNNGC 6 cut(s) 640, 655, 1035, 1214, 1526, 1567
BstNSI RCATGY 3 cut(s) 1019, 1057, 1330
BstSFI CTRYAG 6 cut(s) 213, 511, 951, 1040, 1395, 1527
BstSLI GKGCMC 3 cut(s) 18, 104, 895
BstUI CGCG 3 cut(s) 276, 599, 1626
BstX2I RGATCY 2 cut(s) 209, 470
BstXI CCANNNNNNTGG 2 cut(s) 885, 920
BstYI RGATCY 2 cut(s) 209, 470
BsuRI GGCC 4 cut(s) 102, 639, 1038, 1116
BtsCI GGATG 4 cut(s) 147, 252, 930, 1556
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 5 cut(s) 357, 573, 890, 1092, 1482
BtuMI TCGCGA 1 cut(s) 599
Cac8I GCNNGC 6 cut(s) 72, 274, 641, 910, 1055, 1118
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 2 cut(s) 543, 687
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 4 cut(s) 100, 101, 1114, 1409
CseI GACGC 2 cut(s) 1504, 1526
Csp6I GTAC 6 cut(s) 231, 534, 783, 825, 1089, 1330
CviQI GTAC 6 cut(s) 231, 534, 783, 825, 1089, 1330
DdeI CTNAG 2 cut(s) 680, 1616
DpnI GATC 7 cut(s) 211, 258, 337, 395, 472, 831, 1286
DpnII GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
DraI TTTAAA 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 1522
Eam1104I CTCTTC 1 cut(s) 1468
Eam1105I GACNNNNNGTC 1 cut(s) 1522
EarI CTCTTC 1 cut(s) 1468
EciI GGCGGA 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 857
Eco24I GRGCYC 2 cut(s) 104, 1472
Eco32I GATATC 2 cut(s) 1161, 1362
Eco47I GGWCC 1 cut(s) 1409
Eco47III AGCGCT 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 100
EcoRV GATATC 2 cut(s) 1161, 1362
EcoT14I CCWWGG 1 cut(s) 857
EcoT38I GRGCYC 2 cut(s) 104, 1472
ErhI CCWWGG 1 cut(s) 857
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 534, 1507
FauI CCCGC 1 cut(s) 281
FblI GTMKAC 1 cut(s) 79
FokI GGATG 4 cut(s) 134, 259, 937, 1563
FriOI GRGCYC 2 cut(s) 104, 1472
FspBI CTAG 1 cut(s) 696
GlaI GCGC 2 cut(s) 542, 686
GsuI CTGGAG 1 cut(s) 993
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 4 cut(s) 102, 639, 1038, 1116
HapII CCGG 1 cut(s) 383
HgaI GACGC 2 cut(s) 1504, 1526
HhaI GCGC 2 cut(s) 543, 687
Hin1I GRCGYC 1 cut(s) 1518
Hin6I GCGC 2 cut(s) 541, 685
HinP1I GCGC 2 cut(s) 541, 685
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 4 cut(s) 112, 358, 463, 867
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 275, 763
Hpy166II GTNNAC 5 cut(s) 80, 233, 431, 496, 893
Hpy188I TCNGA 7 cut(s) 57, 246, 285, 681, 905, 1409, 1652
Hpy188III TCNNGA 4 cut(s) 598, 1021, 1384, 1492
Hpy8I GTNNAC 5 cut(s) 80, 233, 431, 496, 893
Hpy99I CGWCG 3 cut(s) 394, 1493, 1520
HpyAV CCTTC 4 cut(s) 499, 1058, 1573, 1619
HpyCH4III ACNGT 4 cut(s) 352, 675, 1253, 1477
HpyCH4IV ACGT 3 cut(s) 287, 326, 1332
HpyF10VI GCNNNNNNNGC 6 cut(s) 640, 655, 1035, 1214, 1526, 1567
HpyF3I CTNAG 2 cut(s) 680, 1616
HpySE526I ACGT 3 cut(s) 287, 326, 1332
Hsp92I GRCGYC 1 cut(s) 1518
HspAI GCGC 2 cut(s) 541, 685
KpnI GGTACC 1 cut(s) 1092
Kzo9I GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
LmnI GCTCC 6 cut(s) 67, 89, 631, 859, 932, 1140
LweI GCATC 3 cut(s) 156, 1106, 1226
MaeI CTAG 1 cut(s) 696
MaeII ACGT 3 cut(s) 287, 326, 1332
MaeIII GTNAC 2 cut(s) 448, 943
MalI GATC 7 cut(s) 211, 258, 337, 395, 472, 831, 1286
MbiI CCGCTC 1 cut(s) 92
MboI GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
MboII GAAGA 8 cut(s) 477, 493, 1171, 1174, 1228, 1450, 1455, 1607
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 2 cut(s) 209, 470
MhlI GDGCHC 5 cut(s) 18, 104, 703, 895, 1472
MluCI AATT 4 cut(s) 622, 939, 1312, 1598
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 5 cut(s) 80, 140, 371, 778, 1387
MroXI GAANNNNTTC 1 cut(s) 1562
MseI TTAA 3 cut(s) 399, 423, 1319
MslI CAYNNNNRTG 3 cut(s) 883, 1292, 1575
MspCI CTTAAG 1 cut(s) 1318
MspI CCGG 1 cut(s) 383
MunI CAATTG 1 cut(s) 939
MvnI CGCG 3 cut(s) 276, 599, 1626
MwoI GCNNNNNNNGC 6 cut(s) 640, 655, 1035, 1214, 1526, 1567
NdeII GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
NlaIV GGNNCC 4 cut(s) 101, 102, 472, 1090
NmuCI GTSAC 2 cut(s) 448, 943
NruI TCGCGA 1 cut(s) 599
NspI RCATGY 3 cut(s) 1019, 1057, 1330
PaeI GCATGC 1 cut(s) 1057
PciI ACATGT 2 cut(s) 1015, 1326
PdmI GAANNNNTTC 1 cut(s) 1562
PfeI GAWTC 3 cut(s) 358, 463, 867
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PscI ACATGT 2 cut(s) 1015, 1326
PshBI ATTAAT 1 cut(s) 399
PsiI TTATAA 2 cut(s) 789, 845
Psp1406I AACGTT 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 101, 102, 472, 1090
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 4 cut(s) 100, 101, 1114, 1409
PstI CTGCAG 3 cut(s) 955, 1399, 1531
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 209, 470
RruI TCGCGA 1 cut(s) 599
RsaI GTAC 6 cut(s) 232, 535, 784, 826, 1090, 1331
RsaNI GTAC 6 cut(s) 231, 534, 783, 825, 1089, 1330
RseI CAYNNNNRTG 3 cut(s) 883, 1292, 1575
SaqAI TTAA 3 cut(s) 399, 423, 1319
Sau3AI GATC 7 cut(s) 209, 256, 335, 393, 470, 829, 1284
Sau96I GGNCC 4 cut(s) 100, 101, 1114, 1409
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 5 cut(s) 18, 104, 703, 895, 1472
SfaNI GCATC 3 cut(s) 156, 1106, 1226
SfcI CTRYAG 6 cut(s) 213, 511, 951, 1040, 1395, 1527
SinI GGWCC 1 cut(s) 1409
SmiMI CAYNNNNRTG 3 cut(s) 883, 1292, 1575
SmlI CTYRAG 3 cut(s) 713, 1021, 1318
SmoI CTYRAG 3 cut(s) 713, 1021, 1318
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 4 cut(s) 622, 939, 1312, 1598
SsiI CCGC 6 cut(s) 47, 68, 83, 92, 274, 1242
SspI AATATT 2 cut(s) 1071, 1376
SspMI CTAG 1 cut(s) 696
StyI CCWWGG 1 cut(s) 857
TaaI ACNGT 4 cut(s) 352, 675, 1253, 1477
TaiI ACGT 3 cut(s) 290, 329, 1335
TaqI TCGA 4 cut(s) 392, 1466, 1515, 1533
TasI AATT 4 cut(s) 622, 939, 1312, 1598
TatI WGTACW 2 cut(s) 230, 533
TauI GCSGC 2 cut(s) 95, 1244
TfiI GAWTC 3 cut(s) 358, 463, 867
Tru1I TTAA 3 cut(s) 399, 423, 1319
Tru9I TTAA 3 cut(s) 399, 423, 1319
TscAI CASTG 5 cut(s) 357, 573, 890, 1099, 1482
TseFI GTSAC 2 cut(s) 448, 943
Tsp45I GTSAC 2 cut(s) 448, 943
TspDTI ATGAA 7 cut(s) 286, 371, 493, 697, 1162, 1282, 1608
TspRI CASTG 5 cut(s) 357, 573, 890, 1099, 1482
Vha464I CTTAAG 1 cut(s) 1318
VneI GTGCAC 1 cut(s) 891
VpaK11BI GGWCC 1 cut(s) 1409
VspI ATTAAT 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 1 cut(s) 1598
XceI RCATGY 3 cut(s) 1019, 1057, 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 1574
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 1562
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.