Rroxscaffold_7G00168300

Nucleobase-ascorbate transporter 3-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
9198106 .. 9202199
4094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168300.1

Sequence Viewer

Length: 1665 bp
ATGGTGGAAACAGGACACAACCACAGCCACACTCCGCCACCTCCGATGGCTTCAGCGCCTGCTCGTCTACCGCTTGGAGCGGCAAGGGGCCCGTTATGGACTCCAGCAGAGCAACTCCACCACCTTCAGTATTGCATCCACTCCAATCCCTCTTGGCCGGAGACATTCTTACTGGCTTTTCAGCACTATATCGTCATGCTTGGATCTATAGTTTTGATTGCCAGTACACTTGTGCCTCGGATGGGTGGGGATCATGGTGATAAAGCCCGTGTTATTCAGACGTTGCTTTTCATGTCAGCAATAAACACCTTGCTTCAGACGTTTTTCGGATCAAGGCTTCCAACAGTGATGAATCCCTCATTTGCTTATATGCTGCCAGTGTCGTCCATCATTAATGATTACTCTAATAGGACTTTTAAAAGTGAACATGAGAGATTTGAGGTCACAATGAGAACGATTCAAGGATCCCTTATTGTATCTTCCTTCATCAACATCTTTATTGGCTATAGTAGAGCATGGGGAAGCTGTACAAAGCGCTTTAGTCCCATTGTTATCGTCCCAGTGGTTTGTGTGGTTGGTCTTGGTCTTTTCGCGAGGGGCTTTCCACTTCTTGCTAATTGTGTGGAGCTTGGCCTGCCTATGCTGATACTGCTGGTCATTACCCAACAGTATCTGAGGCGCATTATTCCTAGAGCACATGCCATACTTGAGAGGTATGCTTTACTTCTCTGCGTTGGGATTGTCTGGTCATTTGCTGCTATCCTCACCGAGGCTGGTGCTTATAACAATGTTGGAGAGCAGACTAAACAAAGTTGCCGTACAGATCACTCTTACCTTATAACCTCTGCTCCTTGGATTAGAATCTCATATCCATTTCAGTGGGGTGCACCCATATTCAGAGCAAGCCATGTCTTTGGGATGATGGGAGCCGCAATTGTCACAACTGCAGAGACAACTGGAACATTGTTTGCAGCAGCACGGCTTTCAGGTGCTACCCCCTCCAGCACACGTCTTGAGCAGCAGCATTGGCCTACAGTTCTGCACGTCCAAATGCAGGGTATTGGCATGCTGCTTGAAGGAATATTTGGTGCTGCTGTTGGTACCACTGCATCAGTAGAAAATGTGGGCCTGCTTGGATTGACACACATAGGGAGCAGGAGAGTAGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCTATATTTGGGAAGTTTGGTGCTTTCTTTGCATCTATTCCCTTACCAATCTTCGCCGCTATATACTGTGTTTTATTTGGGATTGTTGCTGCTGTTGGGATCACTTTCATGCAGTTTGTGAATAATAATTCCTTAAGAAACATGTACGTTGTGGGGCTTTCCCTGTTTCTTGGGATATCAATACCTCAATATTTTATCACAACCACAACTGCAGATGGTGTCGGACCAGTTAGAACAGATGGTATATGGTTTGACGATTGGTTGAACACGATCTTCTCTTCGAGCCCGACGGTGGCAATCATCGTCGGGACGCTGCTTGACAACACGCTGGACGCCAAGTATGCAGTCGATGACAGAGGGCTTGCATGGTGGAAGCCCTTCCAGCACAGGAATGGAGATGGTAGAAATGAAGAATTTTATAGCCTCCCTCTTAGAATACGCGAGTATGTCCCCAGTAGATTTCTCTGA

Protein Analysis

554

Amino Acids

61.16

Weight (kDa)

9.05

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 54 - 464 8.8e-59 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26510
fragaria_vesca FvH4_2g40710 FvH4_2g40710 FvH4_2g40710
malus_domestica MD08G1041700.v1.1 MD15G1035100.v1.1
prunus_persica Prupe.1G389400_v2.0.a1
pyrus_communis pycom08g03370 pycom15g03230
rosa_chinensis RchiOBHm_Chr6g0299891
rosa_laevigata RLG00000011378
rosa_multiflora Rmu_ssc0000158.1_g000015
rosa_roxburghii Rroxscaffold_7G00168300
rosa_rugosa Rorug06G0293000
rosa_samantha Rh6AG404400 Rh6CG418700
rosa_wichuraiana Rw6G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 783, 839
Acc65I GGTACC 1 cut(s) 1100
AccB1I GGYRCC 1 cut(s) 1100
AccBSI CCGCTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 67
AccII CGCG 2 cut(s) 593, 1638
AciI CCGC 5 cut(s) 35, 71, 80, 930, 1254
AclWI GGATC 6 cut(s) 211, 258, 337, 459, 472, 1304
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 1 cut(s) 1610
AcuI CTGAAG 3 cut(s) 36, 110, 299
AcyI GRCGYC 1 cut(s) 1530
AfaI GTAC 5 cut(s) 226, 529, 820, 1102, 1343
AfeI AGCGCT 1 cut(s) 536
AfiI CCNNNNNNNGG 4 cut(s) 242, 769, 1054, 1489
AflII CTTAAG 1 cut(s) 1330
AflIII ACRYGT 2 cut(s) 1007, 1338
AgsI TTSAA 3 cut(s) 461, 1076, 1462
AjiI CACGTC 2 cut(s) 1010, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 1068, 1100
AluBI AGCT 2 cut(s) 525, 628
AluI AGCT 2 cut(s) 525, 628
Alw21I GWGCWC 2 cut(s) 697, 889
Alw26I GTCTC 2 cut(s) 155, 944
Alw44I GTGCAC 1 cut(s) 885
AlwI GGATC 6 cut(s) 211, 258, 337, 459, 472, 1304
AlwNI CAGNNNCTG 2 cut(s) 59, 673
Aor51HI AGCGCT 1 cut(s) 536
AoxI GGCC 5 cut(s) 88, 155, 631, 1028, 1126
ApaI GGGCCC 1 cut(s) 92
ApaLI GTGCAC 1 cut(s) 885
ApoI RAATTY 1 cut(s) 1610
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 1574
Asp718I GGTACC 1 cut(s) 1100
AspLEI GCGC 3 cut(s) 58, 537, 681
AspS9I GGNCC 4 cut(s) 88, 89, 1126, 1421
AsuHPI GGTGA 2 cut(s) 269, 757
AvaII GGWCC 1 cut(s) 1421
BaeGI GKGCMC 2 cut(s) 92, 889
BamHI GGATCC 1 cut(s) 464
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 2 cut(s) 92, 1484
Bbv12I GWGCWC 2 cut(s) 697, 889
BccI CCATC 7 cut(s) 40, 235, 395, 916, 1406, 1430, 1589
BceAI ACGGC 2 cut(s) 801, 995
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BcoDI GTCTC 2 cut(s) 155, 944
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 5 cut(s) 207, 505, 945, 1032, 1407
BfoI RGCGCY 2 cut(s) 59, 538
BfrI CTTAAG 1 cut(s) 1330
Bme18I GGWCC 1 cut(s) 1421
BmgBI CACGTC 2 cut(s) 1010, 1045
BmgT120I GGNCC 4 cut(s) 88, 89, 1126, 1421
BmiI GGNNCC 5 cut(s) 89, 90, 466, 928, 1102
BmrI ACTGGG 2 cut(s) 554, 1644
BmsI GCATC 3 cut(s) 144, 1118, 1238
BmuI ACTGGG 2 cut(s) 554, 1644
BpmI CTGGAG 2 cut(s) 87, 985
BpuEI CTTGAG 2 cut(s) 728, 1034
BsaBI GATNNNNATC 1 cut(s) 860
BsaHI GRCGYC 1 cut(s) 1530
BsaJI CCNNGG 3 cut(s) 236, 768, 851
BsaXI ACNNNNNCTCC 2 cut(s) 832, 862
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 769, 1054, 1489
Bse1I ACTGG 7 cut(s) 177, 222, 377, 560, 961, 1424, 1650
Bse8I GATNNNNATC 1 cut(s) 860
BseDI CCNNGG 3 cut(s) 236, 768, 851
BseGI GGATG 3 cut(s) 135, 246, 924
BseJI GATNNNNATC 1 cut(s) 860
BseLI CCNNNNNNNGG 4 cut(s) 242, 769, 1054, 1489
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 7 cut(s) 177, 222, 377, 560, 961, 1424, 1650
BseSI GKGCMC 2 cut(s) 92, 889
BsgI GTGCAG 2 cut(s) 1025, 1187
Bsh1236I CGCG 2 cut(s) 593, 1638
BshFI GGCC 5 cut(s) 90, 157, 633, 1030, 1128
BshNI GGYRCC 1 cut(s) 1100
BsiHKAI GWGCWC 2 cut(s) 697, 889
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 4 cut(s) 528, 542, 1519, 1631
BslI CCNNNNNNNGG 4 cut(s) 242, 769, 1054, 1489
BsmAI GTCTC 2 cut(s) 155, 944
BsmFI GGGAC 4 cut(s) 528, 542, 1519, 1631
BsnI GGCC 5 cut(s) 90, 157, 633, 1030, 1128
Bsp120I GGGCCC 1 cut(s) 88
Bsp1286I GDGCHC 4 cut(s) 92, 697, 889, 1484
Bsp1407I TGTACA 1 cut(s) 527
Bsp143I GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
Bsp68I TCGCGA 1 cut(s) 593
BspACI CCGC 5 cut(s) 35, 71, 80, 930, 1254
BspANI GGCC 5 cut(s) 90, 157, 633, 1030, 1128
BspCNI CTCAG 1 cut(s) 666
BspFNI CGCG 2 cut(s) 593, 1638
BspLI GGNNCC 5 cut(s) 89, 90, 466, 928, 1102
BspMAI CTGCAG 2 cut(s) 949, 1411
BspPI GGATC 6 cut(s) 211, 258, 337, 459, 472, 1304
BspT107I GGYRCC 1 cut(s) 1100
BspTI CTTAAG 1 cut(s) 1330
BsrBI CCGCTC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 527
BsrI ACTGG 7 cut(s) 177, 222, 377, 560, 961, 1424, 1650
BssECI CCNNGG 3 cut(s) 236, 768, 851
BssMI GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
BssNI GRCGYC 1 cut(s) 1530
BssT1I CCWWGG 1 cut(s) 851
Bst4CI ACNGT 5 cut(s) 346, 669, 1036, 1265, 1489
Bst6I CTCTTC 1 cut(s) 1480
BstACI GRCGYC 1 cut(s) 1530
BstAFI CTTAAG 1 cut(s) 1330
BstAUI TGTACA 1 cut(s) 527
BstC8I GCNNGC 6 cut(s) 60, 635, 904, 1067, 1130, 1560
BstDEI CTNAG 2 cut(s) 674, 1628
BstENI CCTNNNNNAGG 1 cut(s) 767
BstF5I GGATG 3 cut(s) 135, 246, 924
BstFNI CGCG 2 cut(s) 593, 1638
BstH2I RGCGCY 2 cut(s) 59, 538
BstHHI GCGC 3 cut(s) 58, 537, 681
BstKTI GATC 7 cut(s) 206, 253, 332, 467, 826, 1299, 1470
BstMAI GTCTC 2 cut(s) 155, 944
BstMBI GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
BstMWI GCNNNNNNNGC 6 cut(s) 634, 649, 1027, 1226, 1538, 1579
BstNSI RCATGY 3 cut(s) 701, 1069, 1342
BstSFI CTRYAG 5 cut(s) 207, 505, 945, 1032, 1407
BstSLI GKGCMC 2 cut(s) 92, 889
BstUI CGCG 2 cut(s) 593, 1638
BstX2I RGATCY 2 cut(s) 203, 464
BstXI CCANNNNNNTGG 2 cut(s) 879, 914
BstYI RGATCY 2 cut(s) 203, 464
BsuRI GGCC 5 cut(s) 90, 157, 633, 1030, 1128
BtrI CACGTC 2 cut(s) 1010, 1045
BtsCI GGATG 3 cut(s) 135, 246, 924
BtsI GCAGTG 1 cut(s) 1104
BtsIMutI CAGTG 5 cut(s) 351, 384, 567, 884, 1104
BtuMI TCGCGA 1 cut(s) 593
Cac8I GCNNGC 6 cut(s) 60, 635, 904, 1067, 1130, 1560
CaiI CAGNNNCTG 2 cut(s) 59, 673
CfoI GCGC 3 cut(s) 58, 537, 681
Cfr13I GGNCC 4 cut(s) 88, 89, 1126, 1421
CseI GACGC 2 cut(s) 1516, 1538
Csp6I GTAC 5 cut(s) 225, 528, 819, 1101, 1342
CviQI GTAC 5 cut(s) 225, 528, 819, 1101, 1342
DdeI CTNAG 2 cut(s) 674, 1628
DpnI GATC 7 cut(s) 205, 252, 331, 466, 825, 1298, 1469
DpnII GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
DraI TTTAAA 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 1480
EarI CTCTTC 1 cut(s) 1480
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 851
Eco24I GRGCYC 2 cut(s) 92, 1484
Eco32I GATATC 2 cut(s) 1173, 1374
Eco47I GGWCC 1 cut(s) 1421
Eco47III AGCGCT 1 cut(s) 536
Eco57I CTGAAG 3 cut(s) 36, 110, 299
EcoNI CCTNNNNNAGG 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 88
EcoRV GATATC 2 cut(s) 1173, 1374
EcoT14I CCWWGG 1 cut(s) 851
EcoT38I GRGCYC 2 cut(s) 92, 1484
ErhI CCWWGG 1 cut(s) 851
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 4 cut(s) 528, 542, 1519, 1631
FblI GTMKAC 1 cut(s) 67
FokI GGATG 3 cut(s) 122, 253, 931
FriOI GRGCYC 2 cut(s) 92, 1484
FspBI CTAG 1 cut(s) 690
GlaI GCGC 3 cut(s) 57, 536, 680
GsuI CTGGAG 2 cut(s) 87, 985
HaeII RGCGCY 2 cut(s) 59, 538
HaeIII GGCC 5 cut(s) 90, 157, 633, 1030, 1128
HapII CCGG 1 cut(s) 158
HgaI GACGC 2 cut(s) 1516, 1538
HhaI GCGC 3 cut(s) 58, 537, 681
Hin1I GRCGYC 1 cut(s) 1530
Hin6I GCGC 3 cut(s) 56, 535, 679
HinP1I GCGC 3 cut(s) 56, 535, 679
HinfI GANTC 4 cut(s) 100, 352, 457, 861
HpaII CCGG 1 cut(s) 158
HphI GGTGA 2 cut(s) 269, 757
Hpy166II GTNNAC 4 cut(s) 68, 227, 425, 887
Hpy188I TCNGA 9 cut(s) 45, 240, 279, 318, 329, 675, 899, 1421, 1664
Hpy188III TCNNGA 3 cut(s) 592, 1013, 1504
Hpy8I GTNNAC 4 cut(s) 68, 227, 425, 887
Hpy99I CGWCG 2 cut(s) 1489, 1505
HpyAV CCTTC 4 cut(s) 134, 493, 1070, 1585
HpyCH4III ACNGT 5 cut(s) 346, 669, 1036, 1265, 1489
HpyCH4IV ACGT 5 cut(s) 281, 320, 1009, 1044, 1344
HpyF10VI GCNNNNNNNGC 6 cut(s) 634, 649, 1027, 1226, 1538, 1579
HpyF3I CTNAG 2 cut(s) 674, 1628
HpySE526I ACGT 5 cut(s) 281, 320, 1009, 1044, 1344
Hsp92I GRCGYC 1 cut(s) 1530
HspAI GCGC 3 cut(s) 56, 535, 679
KpnI GGTACC 1 cut(s) 1104
Kzo9I GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
LmnI GCTCC 5 cut(s) 77, 625, 853, 926, 1152
LweI GCATC 3 cut(s) 144, 1118, 1238
MaeI CTAG 1 cut(s) 690
MaeII ACGT 5 cut(s) 281, 320, 1009, 1044, 1344
MaeIII GTNAC 2 cut(s) 442, 937
MalI GATC 7 cut(s) 205, 252, 331, 466, 825, 1298, 1469
MbiI CCGCTC 1 cut(s) 80
MboI GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
MboII GAAGA 7 cut(s) 471, 1183, 1186, 1240, 1462, 1467, 1619
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 2 cut(s) 203, 464
MhlI GDGCHC 4 cut(s) 92, 697, 889, 1484
MluCI AATT 4 cut(s) 616, 933, 1324, 1610
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 3 cut(s) 365, 772, 1399
MroXI GAANNNNTTC 1 cut(s) 1574
MseI TTAA 3 cut(s) 393, 417, 1331
MslI CAYNNNNRTG 3 cut(s) 877, 1304, 1587
MspCI CTTAAG 1 cut(s) 1330
MspI CCGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 933
MvnI CGCG 2 cut(s) 593, 1638
MwoI GCNNNNNNNGC 6 cut(s) 634, 649, 1027, 1226, 1538, 1579
NdeII GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
NlaIV GGNNCC 5 cut(s) 89, 90, 466, 928, 1102
NmuCI GTSAC 2 cut(s) 442, 937
NruI TCGCGA 1 cut(s) 593
NspI RCATGY 3 cut(s) 701, 1069, 1342
PaeI GCATGC 1 cut(s) 1069
PciI ACATGT 1 cut(s) 1338
PdmI GAANNNNTTC 1 cut(s) 1574
PfeI GAWTC 3 cut(s) 352, 457, 861
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 1338
PshBI ATTAAT 1 cut(s) 393
PsiI TTATAA 2 cut(s) 783, 839
PspN4I GGNNCC 5 cut(s) 89, 90, 466, 928, 1102
PspOMI GGGCCC 1 cut(s) 88
PspPI GGNCC 4 cut(s) 88, 89, 1126, 1421
PstI CTGCAG 2 cut(s) 949, 1411
PstNI CAGNNNCTG 2 cut(s) 59, 673
PsuI RGATCY 2 cut(s) 203, 464
RruI TCGCGA 1 cut(s) 593
RsaI GTAC 5 cut(s) 226, 529, 820, 1102, 1343
RsaNI GTAC 5 cut(s) 225, 528, 819, 1101, 1342
RseI CAYNNNNRTG 3 cut(s) 877, 1304, 1587
SaqAI TTAA 3 cut(s) 393, 417, 1331
Sau3AI GATC 7 cut(s) 203, 250, 329, 464, 823, 1296, 1467
Sau96I GGNCC 4 cut(s) 88, 89, 1126, 1421
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 4 cut(s) 92, 697, 889, 1484
SfaNI GCATC 3 cut(s) 144, 1118, 1238
SfcI CTRYAG 5 cut(s) 207, 505, 945, 1032, 1407
SinI GGWCC 1 cut(s) 1421
SmiMI CAYNNNNRTG 3 cut(s) 877, 1304, 1587
SmlI CTYRAG 3 cut(s) 707, 1013, 1330
SmoI CTYRAG 3 cut(s) 707, 1013, 1330
SphI GCATGC 1 cut(s) 1069
Sse9I AATT 4 cut(s) 616, 933, 1324, 1610
SsiI CCGC 5 cut(s) 35, 71, 80, 930, 1254
SspI AATATT 2 cut(s) 1083, 1388
SspMI CTAG 1 cut(s) 690
StyI CCWWGG 1 cut(s) 851
TaaI ACNGT 5 cut(s) 346, 669, 1036, 1265, 1489
TaiI ACGT 5 cut(s) 284, 323, 1012, 1047, 1347
TaqI TCGA 2 cut(s) 1478, 1545
TasI AATT 4 cut(s) 616, 933, 1324, 1610
TatI WGTACW 2 cut(s) 224, 527
TauI GCSGC 3 cut(s) 83, 932, 1256
TfiI GAWTC 3 cut(s) 352, 457, 861
Tru1I TTAA 3 cut(s) 393, 417, 1331
Tru9I TTAA 3 cut(s) 393, 417, 1331
TscAI CASTG 5 cut(s) 351, 384, 567, 884, 1111
TseFI GTSAC 2 cut(s) 442, 937
Tsp45I GTSAC 2 cut(s) 442, 937
TspDTI ATGAA 6 cut(s) 280, 365, 475, 1174, 1294, 1620
TspRI CASTG 5 cut(s) 351, 384, 567, 884, 1111
Vha464I CTTAAG 1 cut(s) 1330
VneI GTGCAC 1 cut(s) 885
VpaK11BI GGWCC 1 cut(s) 1421
VspI ATTAAT 1 cut(s) 393
XagI CCTNNNNNAGG 1 cut(s) 767
XapI RAATTY 1 cut(s) 1610
XceI RCATGY 3 cut(s) 701, 1069, 1342
XcmI CCANNNNNNNNNTGG 1 cut(s) 1586
XmiI GTMKAC 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 1574
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.