RLG00000011378

Nucleobase-ascorbate transporter 3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
8997686 .. 9001427
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011378

Sequence Viewer

Length: 1653 bp
ATGGTGGAAACAGGACACAACCACAACCACAACCACACTCCGCCACCTCCGACGGCTCCAGCGCCTGCTCGTCTACCGCTTGGAGCGGCAAGGGGCCCGTTATGGACTCCAGCAGAGCAACTCCACCACCTTCAGTATTGCATCCACTCCAATCCCTCTTGGCCGGAGACATTCTTACTGGCTTTTCAGCACTATATTGTCATGCTTGGATCTATAGTTTTGATTGCCAGTACACTTGTGCCTCGGATGGGTGGGGATCATGGTGATAAAGCCCGCGTTATTCAGACGTTGCTTTTCATGTCAGCAATAAACACCTTGCTTCAAACGTTTTTCGGATCAAGGCTTCCAACAGTGATGAATCCCTCATTTGCTTATATGCTGCCAGTGTCGTCGATCATTAATGATTACTCTAATAGGACTTTTAAAAGTGAACATGAGAGATTTGAGGTCACAATGAGAACGATTCAAGGATCCCTTATTGTATCTTCCTTCATCAACATCTTCATTGGCTATAGTAGAGCATGGGGAAGCTGTACAAAGCGCTTTAGTCCCATTGTTATCGTGCCAGTGGTTTGTGTGGTTGGTCTTGGTCTTTTCGCGAGGGGCTTTCCACTTCTTGCTAATTGTGTGGAGCTTGGCCTGCCTATGCTGATACTGCTGGTCATTACCCAACAGTATCTGAGGCGCATTATTCCTAGAGCACATGCCATACTTGAGAGGTATGCTTTGCTTCTCTGCGTTGGGATTGTCTGGTCATTTGCTGCTATCCTCACTGAGGCTGGTGCTTATAACAATGTTGGAGAGCAGACTAAACAAAGTTGCCGTACAGATCACTCTTACCTTATAACCTCTGCTCCTTGGATTAGAATCTCATATCCATTTCAGTGGGGTGCACCCATATTCAGAGCAAGCCATGTCTTTGGGATGATGGGAGCAGCAATTGTCACAACTGCAGAGACAACTGGAACATTGTTTGCAGCAGCACGGCTTTCAGGTGCTACCCCCCCTCCAGCACATGTCTTGAGCAGCAGCATTGGCCTACAGGGTATTGGCATGCTGCTGGAAGGAATATTTGGTGCTGCTGTTGGTACCACTGCATCAGTAGAAAATGTGGGCCTGCTTGGATTGACACACATAGGGAGCAGGAGAGTAGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCTATATTTGGGAAGTTTGGTGCTTTCTTTGCATCTATTCCTTTACCAATCTTCGCCGCTATATACTGTGTTTTATTTGGGATTGTTGCTGCTGTTGGGATCACTTTCATGCAGTTTGTGAATAATAATTCCTTAAGAAACATGTACGTTGTGGGGCTTTCCCTGTTTCTTGGGATATCAATACCTCAATATTTTATCACGACCACAACTGCAGATGGTGTCGGACCAGTTAGAACAGATGGTATATGGTTTGACGATTGGTTGAACACGATCTTCTCTTCGAGCCCGACAGTGGCAATCATCGTCGGGACGCTGCTGGACAACACGCTTGACGCCAAGCATGCAGTCGATGACAGAGGGCTTGCTTGGTGGAAGCCCTTCCAGCACAGGAATGGAGATGTTAGAAATGAAGAATTTTATAGCCTTCCTCTTAGAATACGCGAGTATGTCCCCAGTAGATTTCTCTGA

Protein Analysis

551

Amino Acids

60.43

Weight (kDa)

9.06

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 56 - 460 1e-62 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26510
fragaria_vesca FvH4_2g40710 FvH4_2g40710 FvH4_2g40710
malus_domestica MD08G1041700.v1.1 MD15G1035100.v1.1
prunus_persica Prupe.1G389400_v2.0.a1
pyrus_communis pycom08g03370 pycom15g03230
rosa_chinensis RchiOBHm_Chr6g0299891
rosa_laevigata RLG00000011378
rosa_multiflora Rmu_ssc0000158.1_g000015
rosa_roxburghii Rroxscaffold_7G00168300
rosa_rugosa Rorug06G0293000
rosa_samantha Rh6AG404400 Rh6CG418700
rosa_wichuraiana Rw6G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 789, 845
Acc65I GGTACC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1088
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 73
AccII CGCG 3 cut(s) 276, 599, 1626
AciI CCGC 5 cut(s) 41, 77, 86, 274, 1242
AclI AACGTT 1 cut(s) 326
AclWI GGATC 6 cut(s) 217, 264, 343, 465, 478, 1292
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 1598
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 1518
AfaI GTAC 5 cut(s) 232, 535, 826, 1090, 1331
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 248, 775, 1477
AflII CTTAAG 1 cut(s) 1318
AflIII ACRYGT 2 cut(s) 1015, 1326
AgsI TTSAA 3 cut(s) 323, 467, 1450
AjuI GAANNNNNNNTTGG 2 cut(s) 1056, 1088
AluBI AGCT 2 cut(s) 531, 634
AluI AGCT 2 cut(s) 531, 634
Alw21I GWGCWC 2 cut(s) 703, 895
Alw26I GTCTC 2 cut(s) 161, 950
Alw44I GTGCAC 1 cut(s) 891
AlwI GGATC 6 cut(s) 217, 264, 343, 465, 478, 1292
AlwNI CAGNNNCTG 2 cut(s) 65, 679
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 5 cut(s) 94, 161, 637, 1036, 1114
ApaI GGGCCC 1 cut(s) 98
ApaLI GTGCAC 1 cut(s) 891
ApoI RAATTY 1 cut(s) 1598
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 1562
Asp718I GGTACC 1 cut(s) 1088
AspLEI GCGC 3 cut(s) 64, 543, 687
AspS9I GGNCC 4 cut(s) 94, 95, 1114, 1409
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 1409
BaeGI GKGCMC 2 cut(s) 98, 895
BamHI GGATCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 2 cut(s) 98, 1472
Bbv12I GWGCWC 2 cut(s) 703, 895
BccI CCATC 4 cut(s) 241, 922, 1394, 1418
BceAI ACGGC 3 cut(s) 69, 807, 1001
BcoDI GTCTC 2 cut(s) 161, 950
BfaI CTAG 1 cut(s) 696
BfmI CTRYAG 5 cut(s) 213, 511, 951, 1040, 1395
BfoI RGCGCY 2 cut(s) 65, 544
BfrI CTTAAG 1 cut(s) 1318
Bme18I GGWCC 1 cut(s) 1409
BmgT120I GGNCC 4 cut(s) 94, 95, 1114, 1409
BmiI GGNNCC 5 cut(s) 57, 95, 96, 472, 1090
BmrI ACTGGG 1 cut(s) 1632
BmsI GCATC 3 cut(s) 150, 1106, 1226
BmuI ACTGGG 1 cut(s) 1632
BpmI CTGGAG 3 cut(s) 42, 93, 993
BpuEI CTTGAG 2 cut(s) 734, 1042
BsaBI GATNNNNATC 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 1518
BsaJI CCNNGG 2 cut(s) 242, 857
BsaXI ACNNNNNCTCC 4 cut(s) 838, 868, 991, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 775, 1477
Bse1I ACTGG 7 cut(s) 183, 228, 383, 566, 967, 1412, 1638
Bse8I GATNNNNATC 1 cut(s) 866
BseDI CCNNGG 2 cut(s) 242, 857
BseGI GGATG 3 cut(s) 141, 252, 930
BseJI GATNNNNATC 1 cut(s) 866
BseLI CCNNNNNNNGG 3 cut(s) 248, 775, 1477
BseMII CTCAG 2 cut(s) 671, 765
BseNI ACTGG 7 cut(s) 183, 228, 383, 566, 967, 1412, 1638
BseSI GKGCMC 2 cut(s) 98, 895
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 3 cut(s) 276, 599, 1626
BshFI GGCC 5 cut(s) 96, 163, 639, 1038, 1116
BshNI GGYRCC 1 cut(s) 1088
BsiHKAI GWGCWC 2 cut(s) 703, 895
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 3 cut(s) 534, 1507, 1619
BslI CCNNNNNNNGG 3 cut(s) 248, 775, 1477
BsmAI GTCTC 2 cut(s) 161, 950
BsmFI GGGAC 3 cut(s) 534, 1507, 1619
BsnI GGCC 5 cut(s) 96, 163, 639, 1038, 1116
Bsp120I GGGCCC 1 cut(s) 94
Bsp1286I GDGCHC 4 cut(s) 98, 703, 895, 1472
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
Bsp68I TCGCGA 1 cut(s) 599
BspACI CCGC 5 cut(s) 41, 77, 86, 274, 1242
BspANI GGCC 5 cut(s) 96, 163, 639, 1038, 1116
BspCNI CTCAG 2 cut(s) 672, 766
BspFNI CGCG 3 cut(s) 276, 599, 1626
BspLI GGNNCC 5 cut(s) 57, 95, 96, 472, 1090
BspMAI CTGCAG 2 cut(s) 955, 1399
BspPI GGATC 6 cut(s) 217, 264, 343, 465, 478, 1292
BspT107I GGYRCC 1 cut(s) 1088
BspTI CTTAAG 1 cut(s) 1318
BsrBI CCGCTC 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 7 cut(s) 183, 228, 383, 566, 967, 1412, 1638
BssECI CCNNGG 2 cut(s) 242, 857
BssMI GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
BssNI GRCGYC 1 cut(s) 1518
BssT1I CCWWGG 1 cut(s) 857
Bst4CI ACNGT 4 cut(s) 352, 675, 1253, 1477
Bst6I CTCTTC 1 cut(s) 1468
BstACI GRCGYC 1 cut(s) 1518
BstAFI CTTAAG 1 cut(s) 1318
BstAUI TGTACA 1 cut(s) 533
BstC8I GCNNGC 8 cut(s) 66, 274, 641, 910, 1055, 1118, 1527, 1548
BstDEI CTNAG 3 cut(s) 680, 774, 1616
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 3 cut(s) 141, 252, 930
BstFNI CGCG 3 cut(s) 276, 599, 1626
BstH2I RGCGCY 2 cut(s) 65, 544
BstHHI GCGC 3 cut(s) 64, 543, 687
BstKTI GATC 8 cut(s) 212, 259, 338, 396, 473, 832, 1287, 1458
BstMAI GTCTC 2 cut(s) 161, 950
BstMBI GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
BstMWI GCNNNNNNNGC 6 cut(s) 640, 655, 1035, 1214, 1526, 1567
BstNSI RCATGY 5 cut(s) 707, 1019, 1057, 1330, 1529
BstSFI CTRYAG 5 cut(s) 213, 511, 951, 1040, 1395
BstSLI GKGCMC 2 cut(s) 98, 895
BstUI CGCG 3 cut(s) 276, 599, 1626
BstX2I RGATCY 2 cut(s) 209, 470
BstXI CCANNNNNNTGG 2 cut(s) 885, 920
BstYI RGATCY 2 cut(s) 209, 470
BsuRI GGCC 5 cut(s) 96, 163, 639, 1038, 1116
BtsCI GGATG 3 cut(s) 141, 252, 930
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 7 cut(s) 357, 390, 573, 771, 890, 1092, 1482
BtuMI TCGCGA 1 cut(s) 599
Cac8I GCNNGC 8 cut(s) 66, 274, 641, 910, 1055, 1118, 1527, 1548
CaiI CAGNNNCTG 2 cut(s) 65, 679
CfoI GCGC 3 cut(s) 64, 543, 687
Cfr13I GGNCC 4 cut(s) 94, 95, 1114, 1409
CseI GACGC 2 cut(s) 1504, 1526
Csp6I GTAC 5 cut(s) 231, 534, 825, 1089, 1330
CviQI GTAC 5 cut(s) 231, 534, 825, 1089, 1330
DdeI CTNAG 3 cut(s) 680, 774, 1616
DpnI GATC 8 cut(s) 211, 258, 337, 395, 472, 831, 1286, 1457
DpnII GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
DraI TTTAAA 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 1468
EarI CTCTTC 1 cut(s) 1468
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 857
Eco24I GRGCYC 2 cut(s) 98, 1472
Eco32I GATATC 2 cut(s) 1161, 1362
Eco47I GGWCC 1 cut(s) 1409
Eco47III AGCGCT 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 94
EcoRV GATATC 2 cut(s) 1161, 1362
EcoT14I CCWWGG 1 cut(s) 857
EcoT38I GRGCYC 2 cut(s) 98, 1472
ErhI CCWWGG 1 cut(s) 857
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 3 cut(s) 534, 1507, 1619
FauI CCCGC 1 cut(s) 281
FblI GTMKAC 1 cut(s) 73
FokI GGATG 3 cut(s) 128, 259, 937
FriOI GRGCYC 2 cut(s) 98, 1472
FspBI CTAG 1 cut(s) 696
GlaI GCGC 3 cut(s) 63, 542, 686
GsuI CTGGAG 3 cut(s) 42, 93, 993
HaeII RGCGCY 2 cut(s) 65, 544
HaeIII GGCC 5 cut(s) 96, 163, 639, 1038, 1116
HapII CCGG 1 cut(s) 164
HgaI GACGC 2 cut(s) 1504, 1526
HhaI GCGC 3 cut(s) 64, 543, 687
Hin1I GRCGYC 1 cut(s) 1518
Hin6I GCGC 3 cut(s) 62, 541, 685
HinP1I GCGC 3 cut(s) 62, 541, 685
HinfI GANTC 4 cut(s) 106, 358, 463, 867
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 74, 233, 431, 893
Hpy188I TCNGA 8 cut(s) 51, 246, 285, 335, 681, 905, 1409, 1652
Hpy188III TCNNGA 4 cut(s) 598, 1021, 1384, 1492
Hpy8I GTNNAC 4 cut(s) 74, 233, 431, 893
Hpy99I CGWCG 3 cut(s) 55, 394, 1493
HpyAV CCTTC 5 cut(s) 140, 499, 1058, 1573, 1619
HpyCH4III ACNGT 4 cut(s) 352, 675, 1253, 1477
HpyCH4IV ACGT 3 cut(s) 287, 326, 1332
HpyF10VI GCNNNNNNNGC 6 cut(s) 640, 655, 1035, 1214, 1526, 1567
HpyF3I CTNAG 3 cut(s) 680, 774, 1616
HpySE526I ACGT 3 cut(s) 287, 326, 1332
Hsp92I GRCGYC 1 cut(s) 1518
HspAI GCGC 3 cut(s) 62, 541, 685
KpnI GGTACC 1 cut(s) 1092
Kzo9I GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
LmnI GCTCC 6 cut(s) 61, 83, 631, 859, 932, 1140
LweI GCATC 3 cut(s) 150, 1106, 1226
MaeI CTAG 1 cut(s) 696
MaeII ACGT 3 cut(s) 287, 326, 1332
MaeIII GTNAC 2 cut(s) 448, 943
MalI GATC 8 cut(s) 211, 258, 337, 395, 472, 831, 1286, 1457
MbiI CCGCTC 1 cut(s) 86
MboI GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
MboII GAAGA 8 cut(s) 477, 493, 1171, 1174, 1228, 1450, 1455, 1607
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 2 cut(s) 209, 470
MhlI GDGCHC 4 cut(s) 98, 703, 895, 1472
MluCI AATT 4 cut(s) 622, 939, 1312, 1598
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 4 cut(s) 74, 371, 778, 1387
MroXI GAANNNNTTC 1 cut(s) 1562
MseI TTAA 3 cut(s) 399, 423, 1319
MslI CAYNNNNRTG 3 cut(s) 883, 1292, 1575
MspCI CTTAAG 1 cut(s) 1318
MspI CCGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 939
MvnI CGCG 3 cut(s) 276, 599, 1626
MwoI GCNNNNNNNGC 6 cut(s) 640, 655, 1035, 1214, 1526, 1567
NdeII GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
NlaIV GGNNCC 5 cut(s) 57, 95, 96, 472, 1090
NmuCI GTSAC 2 cut(s) 448, 943
NruI TCGCGA 1 cut(s) 599
NspI RCATGY 5 cut(s) 707, 1019, 1057, 1330, 1529
PaeI GCATGC 2 cut(s) 1057, 1529
PciI ACATGT 2 cut(s) 1015, 1326
PdmI GAANNNNTTC 1 cut(s) 1562
PfeI GAWTC 3 cut(s) 358, 463, 867
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 2 cut(s) 1015, 1326
PshBI ATTAAT 1 cut(s) 399
PsiI TTATAA 2 cut(s) 789, 845
Psp1406I AACGTT 1 cut(s) 326
PspN4I GGNNCC 5 cut(s) 57, 95, 96, 472, 1090
PspOMI GGGCCC 1 cut(s) 94
PspPI GGNCC 4 cut(s) 94, 95, 1114, 1409
PstI CTGCAG 2 cut(s) 955, 1399
PstNI CAGNNNCTG 2 cut(s) 65, 679
PsuI RGATCY 2 cut(s) 209, 470
RruI TCGCGA 1 cut(s) 599
RsaI GTAC 5 cut(s) 232, 535, 826, 1090, 1331
RsaNI GTAC 5 cut(s) 231, 534, 825, 1089, 1330
RseI CAYNNNNRTG 3 cut(s) 883, 1292, 1575
SaqAI TTAA 3 cut(s) 399, 423, 1319
Sau3AI GATC 8 cut(s) 209, 256, 335, 393, 470, 829, 1284, 1455
Sau96I GGNCC 4 cut(s) 94, 95, 1114, 1409
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 4 cut(s) 98, 703, 895, 1472
SfaNI GCATC 3 cut(s) 150, 1106, 1226
SfcI CTRYAG 5 cut(s) 213, 511, 951, 1040, 1395
SinI GGWCC 1 cut(s) 1409
SmiMI CAYNNNNRTG 3 cut(s) 883, 1292, 1575
SmlI CTYRAG 3 cut(s) 713, 1021, 1318
SmoI CTYRAG 3 cut(s) 713, 1021, 1318
SphI GCATGC 2 cut(s) 1057, 1529
Sse9I AATT 4 cut(s) 622, 939, 1312, 1598
SsiI CCGC 5 cut(s) 41, 77, 86, 274, 1242
SspI AATATT 2 cut(s) 1071, 1376
SspMI CTAG 1 cut(s) 696
StyI CCWWGG 1 cut(s) 857
TaaI ACNGT 4 cut(s) 352, 675, 1253, 1477
TaiI ACGT 3 cut(s) 290, 329, 1335
TaqI TCGA 3 cut(s) 392, 1466, 1533
TasI AATT 4 cut(s) 622, 939, 1312, 1598
TatI WGTACW 2 cut(s) 230, 533
TauI GCSGC 2 cut(s) 89, 1244
TfiI GAWTC 3 cut(s) 358, 463, 867
Tru1I TTAA 3 cut(s) 399, 423, 1319
Tru9I TTAA 3 cut(s) 399, 423, 1319
TscAI CASTG 7 cut(s) 357, 390, 573, 778, 890, 1099, 1482
TseFI GTSAC 2 cut(s) 448, 943
Tsp45I GTSAC 2 cut(s) 448, 943
TspDTI ATGAA 7 cut(s) 286, 371, 481, 493, 1162, 1282, 1608
TspRI CASTG 7 cut(s) 357, 390, 573, 778, 890, 1099, 1482
Vha464I CTTAAG 1 cut(s) 1318
VneI GTGCAC 1 cut(s) 891
VpaK11BI GGWCC 1 cut(s) 1409
VspI ATTAAT 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 1 cut(s) 1598
XceI RCATGY 5 cut(s) 707, 1019, 1057, 1330, 1529
XcmI CCANNNNNNNNNTGG 1 cut(s) 1574
XmiI GTMKAC 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 1562
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.