FvH4_3g00500

Potassium channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
262294 .. 265033
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00500.t1

Sequence Viewer

Length: 1056 bp
ATGGCTAGTGATCATGATGTTAAACAAGCCTTGCTTTCTGAAAAGAACGACCATTCCCAACTTAATAACGAAAAGAATGTAGTTGTCCAGAGAAGAAAAAACCGCCAAGATAAAAACCGTCTGAACCAAAATGAAGTAGTAATACAGACTTCTGCAGATTGTGAGCCAATGTATGTGAAACCACAACTTAGTTTAAAGCAAGTGGTCTTGATGTTGATTTCATACATAGGTGGAGGCACCTTCTGTTTTTTCTTGGTCAGGAATCAGATTAAGGGAGTAAAAACAAATCCGATTCTTGATTCCATGTACTTGTGTGTAGTCACAATGAGCACTGTAGGATATGGAGACCTTGTTCCTAATAGCGTAATGGCAAAGCTACTTGCATGCGTTTTTGTGTTCACTGGAATGGCTCTTGTTGGTCTGATTCTTGGCAAGGCAGCAGATTACATTGTAGAGAAGCAGGAGGTGCTTTTGGTTAGGGCCATACACTTCCATGAAAAGGTTGGCTCTGCCGAGCTTCTTAAGGAGGTTGAATTAGACAAAGTCAAGTTCAAATGTATTACTGCAGGAATCCTTCTTGTGGTTCTTTTTGTAATTGGAACTGTGTTCTTGTGTGTGGTTGAGGAACTGGAAGTTTTGGATGCTATTTATTGCGTTTGTTCCACCATTACTACTCTAGGTTATGGGGATAAGAGTTTCTCAACTGCAGCAGGTCGAAGTTTTGCTGTATTTTGGATAATTACAAGTACAATGTGCTTAGCACAATTTTATCTCTACCTTGCTGAACTATACACAGAAAAAAGGCAGAGATCACTCGTCAGGTGGGTGCTTACTCGAAGATTGACACCTTCCGATCTTGAGGAGGCAGATCTTGATCATGATAAAGTCGTCAGTGCTTCCGAGTTTGTGATATATAAGTTGAAGGAAATGGGGAAGATCAGCCAGGAGGATGTTTCACTTATCATGGAAACCTTCAAGAAGCTTGACATTGATCACTCAGGAACTTTGACAGCATCTGATCTATTACCGTTAACACCCCGTCAAACTGATGAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

39.39

Weight (kDa)

5.95

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 71 - 151 2e-15 Ion channel
Ion_trans PF00520 88 - 154 3.5e-06 Ion transport protein
Ion_trans_2 PF07885 191 - 265 2.3e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014681)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 1 cut(s) 103
AfaI GTAC 2 cut(s) 308, 748
AfiI CCNNNNNNNGG 2 cut(s) 499, 580
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 4 cut(s) 533, 553, 922, 976
AjnI CCWGG 1 cut(s) 942
AloI GAACNNNNNNTCC 4 cut(s) 38, 70, 336, 368
AluBI AGCT 3 cut(s) 376, 517, 982
AluI AGCT 3 cut(s) 376, 517, 982
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 1016
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 2 cut(s) 437, 707
AspS9I GGNCC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 449, 719
BciT130I CCWGG 1 cut(s) 944
BclI TGATCA 3 cut(s) 10, 874, 991
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 6, 677
BfmI CTRYAG 4 cut(s) 153, 333, 564, 705
BfrI CTTAAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 701
BglII AGATCT 1 cut(s) 868
BisI GCNGC 2 cut(s) 438, 708
BlpI GCTNAGC 1 cut(s) 757
BlsI GCNGC 2 cut(s) 439, 709
Bme1390I CCNGG 1 cut(s) 944
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 944
BmsI GCATC 2 cut(s) 631, 1022
Bpu1102I GCTNAGC 1 cut(s) 757
BpuEI CTTGAG 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 580
Bse1I ACTGG 2 cut(s) 406, 633
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 1 cut(s) 944
BseGI GGATG 2 cut(s) 646, 955
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 2 cut(s) 499, 580
BseMII CTCAG 1 cut(s) 1011
BseNI ACTGG 2 cut(s) 406, 633
BseRI GAGGAG 1 cut(s) 875
BseXI GCAGC 2 cut(s) 449, 719
BshFI GGCC 1 cut(s) 482
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 499, 580
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 1 cut(s) 482
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
Bsp1720I GCTNAGC 1 cut(s) 757
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 1010
BspHI TCATGA 2 cut(s) 13, 877
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 3 cut(s) 157, 568, 709
BspMI ACCTGC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 339
BsrI ACTGG 2 cut(s) 406, 633
BssMI GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
Bst2UI CCWGG 1 cut(s) 944
Bst4CI ACNGT 4 cut(s) 119, 334, 604, 1029
BstAFI CTTAAG 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 3 cut(s) 188, 757, 997
BstF5I GGATG 2 cut(s) 646, 955
BstKTI GATC 8 cut(s) 13, 812, 856, 871, 877, 939, 994, 1021
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 1 cut(s) 944
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 942
BstSFI CTRYAG 4 cut(s) 153, 333, 564, 705
BstV1I GCAGC 2 cut(s) 449, 719
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 646, 955
BtsIMutI CAGTG 3 cut(s) 330, 399, 898
BveI ACCTGC 1 cut(s) 701
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 1016
CciI TCATGA 2 cut(s) 13, 877
Cfr13I GGNCC 1 cut(s) 480
Csp6I GTAC 2 cut(s) 307, 747
CviAII CATG 6 cut(s) 14, 304, 384, 494, 878, 964
CviQI GTAC 2 cut(s) 307, 747
DdeI CTNAG 3 cut(s) 188, 757, 997
DpnI GATC 8 cut(s) 12, 811, 855, 870, 876, 938, 993, 1020
DpnII GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
DraI TTTAAA 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 942
FaeI CATG 6 cut(s) 17, 307, 387, 497, 881, 967
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 6 cut(s) 13, 303, 383, 493, 877, 963
FbaI TGATCA 3 cut(s) 10, 874, 991
Fnu4HI GCNGC 2 cut(s) 438, 708
FokI GGATG 2 cut(s) 653, 962
Fsp4HI GCNGC 2 cut(s) 438, 708
FspBI CTAG 2 cut(s) 6, 677
GluI GCNGC 2 cut(s) 438, 708
HaeIII GGCC 1 cut(s) 482
Hin1II CATG 6 cut(s) 17, 307, 387, 497, 881, 967
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HindIII AAGCTT 1 cut(s) 980
HinfI GANTC 5 cut(s) 262, 292, 299, 424, 570
HpaI GTTAAC 1 cut(s) 1032
Hpy166II GTNNAC 2 cut(s) 399, 1032
Hpy188I TCNGA 8 cut(s) 40, 123, 267, 291, 423, 853, 901, 1018
Hpy8I GTNNAC 2 cut(s) 399, 1032
HpyAV CCTTC 5 cut(s) 250, 584, 858, 916, 982
HpyCH4III ACNGT 4 cut(s) 119, 334, 604, 1029
HpyCH4V TGCA 4 cut(s) 155, 383, 566, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 3 cut(s) 188, 757, 997
Hsp92II CATG 6 cut(s) 17, 307, 387, 497, 881, 967
Ksp22I TGATCA 3 cut(s) 10, 874, 991
KspAI GTTAAC 1 cut(s) 1032
Kzo9I GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
Lsp1109I GCAGC 2 cut(s) 449, 719
LweI GCATC 2 cut(s) 631, 1022
MaeI CTAG 2 cut(s) 6, 677
MaeIII GTNAC 1 cut(s) 319
MalI GATC 8 cut(s) 12, 811, 855, 870, 876, 938, 993, 1020
MboI GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
MboII GAAGA 3 cut(s) 105, 849, 946
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 4 cut(s) 533, 594, 738, 764
MnlI CCTC 7 cut(s) 227, 457, 520, 616, 853, 856, 940
MseI TTAA 6 cut(s) 21, 63, 194, 270, 522, 1031
MslI CAYNNNNRTG 2 cut(s) 404, 492
MspCI CTTAAG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 944
MvaI CCWGG 1 cut(s) 944
MwoI GCNNNNNNNGC 1 cut(s) 466
NdeII GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
NlaIII CATG 6 cut(s) 17, 307, 387, 497, 881, 967
NlaIV GGNNCC 1 cut(s) 238
NmeAIII GCCGAG 1 cut(s) 538
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PagI TCATGA 2 cut(s) 13, 877
PfeI GAWTC 5 cut(s) 262, 292, 299, 424, 570
PflFI GACNNNGTC 1 cut(s) 542
PkrI GCNGC 2 cut(s) 439, 709
Psp6I CCWGG 1 cut(s) 942
PspGI CCWGG 1 cut(s) 942
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 480
PstI CTGCAG 3 cut(s) 157, 568, 709
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 1 cut(s) 868
PsyI GACNNNGTC 1 cut(s) 542
RsaI GTAC 2 cut(s) 308, 748
RsaNI GTAC 2 cut(s) 307, 747
RseI CAYNNNNRTG 2 cut(s) 404, 492
SaqAI TTAA 6 cut(s) 21, 63, 194, 270, 522, 1031
SatI GCNGC 2 cut(s) 438, 708
Sau3AI GATC 8 cut(s) 10, 809, 853, 868, 874, 936, 991, 1018
Sau96I GGNCC 1 cut(s) 480
ScrFI CCNGG 1 cut(s) 944
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 2 cut(s) 631, 1022
SfcI CTRYAG 4 cut(s) 153, 333, 564, 705
SmiMI CAYNNNNRTG 2 cut(s) 404, 492
SmlI CTYRAG 2 cut(s) 521, 857
SmoI CTYRAG 2 cut(s) 521, 857
SphI GCATGC 1 cut(s) 387
Sse9I AATT 4 cut(s) 533, 594, 738, 764
SsiI CCGC 1 cut(s) 103
SspMI CTAG 2 cut(s) 6, 677
StyD4I CCNGG 1 cut(s) 942
TaaI ACNGT 4 cut(s) 119, 334, 604, 1029
TaqI TCGA 2 cut(s) 715, 835
TasI AATT 4 cut(s) 533, 594, 738, 764
TatI WGTACW 2 cut(s) 306, 746
TfiI GAWTC 5 cut(s) 262, 292, 299, 424, 570
Tru1I TTAA 6 cut(s) 21, 63, 194, 270, 522, 1031
Tru9I TTAA 6 cut(s) 21, 63, 194, 270, 522, 1031
TscAI CASTG 3 cut(s) 337, 406, 898
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 437, 707
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 147, 210, 510
TspRI CASTG 3 cut(s) 337, 406, 898
Tth111I GACNNNGTC 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 521
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 2 cut(s) 6, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.